Wall clock time and date at job start Tue Mar 31 2020 16:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45197 * 109.47316 * 2 1 4 4 C 1.34738 * 116.99853 * 180.02562 * 3 2 1 5 5 O 1.21498 * 120.00482 * 359.97438 * 4 3 2 6 6 C 1.47523 * 119.99903 * 179.97438 * 4 3 2 7 7 C 1.40197 * 120.85612 * 353.77512 * 6 4 3 8 8 N 1.31893 * 119.02089 * 179.97438 * 7 6 4 9 9 C 1.32833 * 120.88708 * 0.02562 * 8 7 6 10 10 C 1.47956 * 119.05508 * 180.02562 * 9 8 7 11 11 C 1.39478 * 120.18168 * 179.70125 * 10 9 8 12 12 C 1.37905 * 119.93276 * 179.72308 * 11 10 9 13 13 C 1.38520 * 120.29835 * 0.58099 * 12 11 10 14 14 C 1.38061 * 120.36658 * 359.69688 * 13 12 11 15 15 C 1.38805 * 120.05641 * 359.97438 * 14 13 12 16 16 O 1.35582 * 120.14852 * 180.02562 * 15 14 13 17 17 C 1.34802 * 116.99881 * 5.69543 * 16 15 14 18 18 H 1.08000 * 120.00368 * 354.82258 * 17 16 15 19 19 C 1.38687 * 119.99983 * 174.82047 * 17 16 15 20 20 N 1.31528 * 120.00263 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99941 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47234 * 90.00215 * 21 19 17 23 23 H 1.48500 * 109.47020 * 209.99792 * 21 19 17 24 24 H 1.48500 * 109.47495 * 330.00188 * 21 19 17 25 25 N 1.32810 * 121.89467 * 0.02562 * 9 8 7 26 26 C 1.31913 * 120.89057 * 359.97438 * 25 9 8 27 27 C 1.50704 * 120.48899 * 180.02562 * 26 25 9 28 28 H 1.08994 * 109.46945 * 300.00296 * 1 2 3 29 29 H 1.08994 * 109.47056 * 60.00226 * 1 2 3 30 30 H 1.08997 * 109.47084 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46985 * 239.99455 * 2 1 3 32 32 H 1.09002 * 109.46768 * 120.00354 * 2 1 3 33 33 H 1.08005 * 120.49063 * 359.71158 * 7 6 4 34 34 H 1.08005 * 120.03348 * 0.02562 * 11 10 9 35 35 H 1.08007 * 119.85307 * 180.27868 * 12 11 10 36 36 H 1.08000 * 119.81838 * 179.72079 * 13 12 11 37 37 H 1.07993 * 119.97314 * 180.02562 * 14 13 12 38 38 H 0.97002 * 120.00735 * 179.97438 * 20 19 17 39 39 H 1.08994 * 109.47511 * 263.18079 * 27 26 25 40 40 H 1.09002 * 109.46780 * 23.18423 * 27 26 25 41 41 H 1.09000 * 109.46947 * 143.17905 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3499 1.5454 -0.0005 5 8 4.0900 0.5819 -0.0005 6 6 3.9138 2.9086 -0.0011 7 6 3.0830 4.0303 -0.1317 8 7 3.6257 5.2324 -0.1271 9 6 4.9390 5.3873 -0.0017 10 6 5.5045 6.7545 -0.0012 11 6 6.8796 6.9445 0.1353 12 6 7.4018 8.2208 0.1294 13 6 6.5654 9.3175 0.0005 14 6 5.2020 9.1440 -0.1296 15 6 4.6610 7.8657 -0.1324 16 8 3.3223 7.6931 -0.2605 17 6 2.5833 8.7949 -0.4997 18 1 3.0498 9.7689 -0.4979 19 6 1.2240 8.6776 -0.7482 20 7 0.5030 9.7525 -0.9821 21 14 0.4172 6.9928 -0.7522 22 1 -0.0577 6.6681 0.6169 23 1 -0.7362 6.9985 -1.6876 24 1 1.4037 5.9724 -1.1889 25 7 5.7591 4.3501 0.1231 26 6 5.2940 3.1157 0.1277 27 6 6.2328 1.9454 0.2706 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5140 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0149 3.9117 -0.2387 34 1 7.5352 6.0927 0.2406 35 1 8.4672 8.3663 0.2306 36 1 6.9823 10.3138 0.0014 37 1 4.5558 10.0034 -0.2301 38 1 -0.4477 9.6706 -1.1563 39 1 6.4663 1.5444 -0.7157 40 1 7.1517 2.2740 0.7561 41 1 5.7593 1.1715 0.8747 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243585561.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:04 Heat of formation + Delta-G solvation = -44.561927 kcal Electronic energy + Delta-G solvation = -27396.820197 eV Core-core repulsion = 23435.794459 eV Total energy + Delta-G solvation = -3961.025738 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 4.42 seconds Orbital eigenvalues (eV) -42.48209 -41.28265 -40.62142 -38.24628 -37.84875 -35.50624 -34.58831 -34.40229 -32.65113 -31.43234 -30.83428 -29.74524 -27.29912 -26.54966 -24.54912 -24.11541 -23.24821 -22.66504 -22.09840 -19.80965 -19.40203 -19.17076 -18.52269 -17.79031 -17.66144 -17.59071 -16.44968 -16.36788 -15.93775 -15.68512 -15.56905 -15.31234 -14.98758 -14.91500 -14.59663 -14.21684 -14.16230 -14.00563 -13.97829 -13.68483 -13.37252 -13.15451 -12.95772 -12.80809 -12.60709 -12.51857 -12.45909 -12.26877 -11.86143 -11.71892 -11.55959 -11.40009 -11.21966 -11.06091 -10.89544 -10.25455 -9.63262 -9.04646 -8.51453 -6.19396 -1.06069 0.00979 0.46399 0.69023 1.35198 1.37821 1.40312 1.47916 1.64820 2.35681 2.53722 2.63288 2.84574 2.95843 3.02418 3.20961 3.25874 3.51400 3.80337 3.96042 4.01910 4.05456 4.14741 4.27779 4.34692 4.37869 4.52829 4.62098 4.66188 4.76195 4.79323 4.86047 4.91491 4.96026 5.07830 5.13770 5.24867 5.37161 5.40548 5.55500 5.65709 5.73610 5.86502 5.91119 6.18201 6.54467 6.84019 6.97548 7.60204 8.57884 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.010345 B = 0.004885 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.988020 B = 5730.617817 C = 8400.319376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.361 6.361 4 C 0.534 3.466 5 O -0.509 6.509 6 C -0.275 4.275 7 C 0.207 3.793 8 N -0.529 5.529 9 C 0.400 3.600 10 C -0.162 4.162 11 C -0.016 4.016 12 C -0.196 4.196 13 C -0.037 4.037 14 C -0.254 4.254 15 C 0.168 3.832 16 O -0.183 6.183 17 C -0.399 4.399 18 H 0.086 0.914 19 C 0.019 3.981 20 N -0.916 5.916 21 Si 0.954 3.046 22 H -0.275 1.275 23 H -0.283 1.283 24 H -0.227 1.227 25 N -0.529 5.529 26 C 0.240 3.760 27 C -0.100 4.100 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.184 0.816 34 H 0.153 0.847 35 H 0.162 0.838 36 H 0.152 0.848 37 H 0.119 0.881 38 H 0.284 0.716 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.689 -17.665 2.451 19.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.017 4.017 3 O -0.278 6.278 4 C 0.379 3.621 5 O -0.400 6.400 6 C -0.281 4.281 7 C 0.039 3.961 8 N -0.244 5.244 9 C 0.143 3.857 10 C -0.165 4.165 11 C -0.036 4.036 12 C -0.214 4.214 13 C -0.055 4.055 14 C -0.273 4.273 15 C 0.113 3.887 16 O -0.085 6.085 17 C -0.476 4.476 18 H 0.103 0.897 19 C -0.180 4.180 20 N -0.555 5.555 21 Si 0.777 3.223 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.149 1.149 25 N -0.245 5.245 26 C 0.091 3.909 27 C -0.157 4.157 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.124 0.876 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.201 0.799 34 H 0.170 0.830 35 H 0.179 0.821 36 H 0.170 0.830 37 H 0.137 0.863 38 H 0.093 0.907 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.868 -17.167 2.406 19.036 hybrid contribution -1.460 -0.586 -0.127 1.578 sum 6.408 -17.753 2.279 19.011 Atomic orbital electron populations 1.21865 0.90842 1.04544 1.03530 1.23386 0.96725 0.78224 1.03315 1.86566 1.22686 1.34778 1.83785 1.20265 0.81109 0.88220 0.72529 1.90767 1.60087 1.42266 1.46903 1.20750 0.96430 0.93104 1.17861 1.23914 1.01608 0.86087 0.84505 1.68908 1.13453 1.25800 1.16206 1.21673 0.85325 0.93226 0.85514 1.17547 0.93757 0.85975 1.19270 1.21234 0.91184 0.98988 0.92163 1.21192 1.01235 0.90979 1.08033 1.21448 0.91346 1.00718 0.92001 1.21323 0.97541 0.95993 1.12427 1.19623 0.83714 0.93587 0.91806 1.83814 1.13905 1.33700 1.77034 1.20895 0.91720 0.85989 1.48957 0.89696 1.25207 0.95659 1.02347 0.94829 1.69717 1.08401 1.30468 1.46953 0.85450 0.78011 0.80550 0.78317 1.20009 1.20849 1.14931 1.68419 1.38805 0.98493 1.18804 1.22400 0.91044 0.93620 0.83806 1.21096 0.97545 0.92092 1.04951 0.91604 0.91652 0.87617 0.90486 0.90370 0.79948 0.82953 0.82055 0.83031 0.86311 0.90675 0.88158 0.88788 0.88030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 10.29 71.98 0.74 -1.19 16 2 C 0.06 0.97 6.20 71.98 0.45 1.42 16 3 O -0.36 -8.82 9.58 -56.48 -0.54 -9.37 16 4 C 0.53 14.48 7.84 70.27 0.55 15.03 16 5 O -0.51 -13.82 13.32 19.84 0.26 -13.56 16 6 C -0.28 -8.48 5.91 -19.89 -0.12 -8.60 16 7 C 0.21 7.32 10.48 85.16 0.89 8.21 16 8 N -0.53 -22.48 7.45 -188.19 -1.40 -23.88 16 9 C 0.40 16.11 7.55 137.29 1.04 17.14 16 10 C -0.16 -6.56 5.89 -19.94 -0.12 -6.68 16 11 C -0.02 -0.52 9.56 22.49 0.21 -0.30 16 12 C -0.20 -5.41 10.03 22.26 0.22 -5.19 16 13 C -0.04 -1.14 10.03 22.30 0.22 -0.92 16 14 C -0.25 -10.58 9.16 22.36 0.20 -10.38 16 15 C 0.17 7.80 6.65 22.86 0.15 7.95 16 16 O -0.18 -9.68 6.37 -20.61 -0.13 -9.81 16 17 C -0.40 -22.92 9.95 67.93 0.68 -22.25 16 18 H 0.09 5.05 5.44 -2.91 -0.02 5.03 16 19 C 0.02 1.11 5.49 84.85 0.47 1.58 16 20 N -0.92 -54.13 13.96 21.62 0.30 -53.82 16 21 Si 0.95 45.03 28.62 68.60 1.96 46.99 16 22 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.23 -10.33 5.82 99.48 0.58 -9.75 16 25 N -0.53 -18.08 9.36 -176.41 -1.65 -19.73 16 26 C 0.24 7.19 6.87 43.02 0.30 7.48 16 27 C -0.10 -2.20 8.96 71.24 0.64 -1.56 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 30 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.18 5.81 7.57 -2.91 -0.02 5.79 16 34 H 0.15 4.15 7.50 -2.91 -0.02 4.13 16 35 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 36 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 37 H 0.12 5.37 5.64 -2.91 -0.02 5.35 16 38 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 39 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.10 2.23 5.99 -2.39 -0.01 2.22 16 Total: -1.00 -68.93 353.10 6.28 -62.65 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.95 Total: 18.78 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 6.53 Total: 1.74 kcal Atomic # 7 Polarization: -94.68 SS G_CDS: -2.75 Total: -97.43 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.41 Total: -32.73 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.96 Total: 46.99 kcal Total: -68.93 6.28 -62.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585561.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.089 kcal (2) G-P(sol) polarization free energy of solvation -68.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.42 seconds