Wall clock time and date at job start Tue Mar 31 2020 16:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45198 * 109.46795 * 2 1 4 4 C 1.34754 * 116.99755 * 179.97438 * 3 2 1 5 5 O 1.21504 * 120.00439 * 0.02562 * 4 3 2 6 6 C 1.47429 * 119.99667 * 179.97438 * 4 3 2 7 7 C 1.39876 * 121.01018 * 90.02915 * 6 4 3 8 8 C 1.50701 * 120.49776 * 359.95045 * 7 6 4 9 9 N 1.32150 * 119.00135 * 179.97438 * 7 6 4 10 10 C 1.31989 * 121.24551 * 359.97438 * 9 7 6 11 11 N 1.31621 * 122.26838 * 359.70844 * 10 9 7 12 12 C 1.33163 * 120.82819 * 0.58465 * 11 10 9 13 13 C 1.47866 * 120.66225 * 179.71116 * 12 11 10 14 14 C 1.39523 * 120.18339 * 129.51708 * 13 12 11 15 15 C 1.37894 * 119.92822 * 179.97438 * 14 13 12 16 16 C 1.38529 * 120.30597 * 359.97438 * 15 14 13 17 17 C 1.38062 * 120.37001 * 0.02562 * 16 15 14 18 18 C 1.38796 * 120.06337 * 0.02562 * 17 16 15 19 19 O 1.35585 * 120.14938 * 179.97438 * 18 17 16 20 20 C 1.34805 * 116.99805 * 5.77891 * 19 18 17 21 21 H 1.07999 * 120.00264 * 5.45995 * 20 19 18 22 22 C 1.38690 * 119.99513 * 185.45686 * 20 19 18 23 23 N 1.31530 * 119.99959 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99694 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47447 * 90.00071 * 24 22 20 26 26 H 1.48507 * 109.47053 * 210.00065 * 24 22 20 27 27 H 1.48502 * 109.47156 * 329.99857 * 24 22 20 28 28 H 1.09003 * 109.46960 * 299.99309 * 1 2 3 29 29 H 1.08994 * 109.47391 * 59.99737 * 1 2 3 30 30 H 1.09009 * 109.46820 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46960 * 240.00690 * 2 1 3 32 32 H 1.08994 * 109.47391 * 120.00263 * 2 1 3 33 33 H 1.08997 * 109.47149 * 90.00633 * 8 7 6 34 34 H 1.09004 * 109.47298 * 209.99928 * 8 7 6 35 35 H 1.08993 * 109.47593 * 330.00209 * 8 7 6 36 36 H 1.07998 * 118.86738 * 179.97438 * 10 9 7 37 37 H 1.07999 * 120.03152 * 0.02562 * 14 13 12 38 38 H 1.08003 * 119.84611 * 179.97438 * 15 14 13 39 39 H 1.07999 * 119.81655 * 180.02562 * 16 15 14 40 40 H 1.07997 * 119.96554 * 179.72166 * 17 16 15 41 41 H 0.96999 * 119.99354 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5456 0.0005 5 8 4.0901 0.5820 0.0005 6 6 3.9133 2.9079 0.0000 7 6 4.1887 3.5743 1.1986 8 6 3.9129 2.9110 2.5233 9 7 4.6938 4.7946 1.1518 10 6 4.9412 5.3895 -0.0002 11 7 4.7070 4.8064 -1.1567 12 6 4.1929 3.5791 -1.2105 13 6 3.9253 2.9300 -2.5119 14 6 4.3944 1.6400 -2.7619 15 6 4.1414 1.0395 -3.9771 16 6 3.4224 1.7109 -4.9525 17 6 2.9524 2.9877 -4.7184 18 6 3.1991 3.6072 -3.5010 19 8 2.7387 4.8613 -3.2695 20 6 1.9468 5.4067 -4.2143 21 1 1.6341 4.8168 -5.0632 22 6 1.5337 6.7254 -4.0961 23 7 1.9142 7.4435 -3.0620 24 14 0.4358 7.4809 -5.4050 25 1 -0.9878 7.2629 -5.0432 26 1 0.7056 8.9384 -5.4964 27 1 0.7169 6.8423 -6.7159 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 1.8934 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 4.7958 2.3577 2.8434 34 1 3.6710 3.6706 3.2667 35 1 3.0725 2.2249 2.4182 36 1 5.3538 6.3875 0.0064 37 1 4.9543 1.1121 -2.0041 38 1 4.5055 0.0410 -4.1694 39 1 3.2285 1.2329 -5.9013 40 1 2.3964 3.5069 -5.4850 41 1 1.6255 8.3659 -2.9796 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243585617.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:49 Heat of formation + Delta-G solvation = -38.966492 kcal Electronic energy + Delta-G solvation = -28283.706686 eV Core-core repulsion = 24322.923585 eV Total energy + Delta-G solvation = -3960.783101 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -41.07957 -39.75238 -39.02466 -36.61085 -36.36369 -34.30112 -33.06406 -32.40491 -31.56227 -30.01944 -28.97280 -28.42203 -25.48162 -25.37938 -23.41314 -22.96602 -21.65108 -21.14916 -20.68390 -18.14583 -17.88755 -17.70995 -17.17788 -16.67356 -16.09277 -16.04558 -14.93957 -14.82501 -14.49842 -14.36506 -13.98451 -13.71128 -13.65246 -13.55933 -12.97868 -12.93519 -12.87269 -12.82787 -12.60696 -12.39767 -11.89762 -11.77304 -11.69190 -11.48756 -11.30757 -11.04884 -10.92856 -10.86477 -10.53617 -10.44227 -10.18855 -10.09597 -9.57095 -9.33090 -8.94490 -8.84934 -8.21275 -7.35197 -6.55790 -4.13209 0.88741 1.24303 2.08324 2.16676 2.29923 2.79514 3.07121 3.07792 3.12539 3.86771 4.03344 4.20480 4.34801 4.41028 4.66740 4.76259 4.91799 4.98417 5.00159 5.05369 5.23410 5.24793 5.38444 5.47824 5.52075 5.55672 5.65463 5.73854 5.76751 5.83404 5.91005 5.97182 5.98785 6.17616 6.43616 6.52024 6.59166 6.68185 6.91631 7.05786 7.17793 7.23030 7.34744 7.63611 7.80394 7.85887 8.47427 8.87494 9.55370 10.59903 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.010456 B = 0.005043 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.251937 B = 5550.622945 C = 6405.265919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.343 6.343 4 C 0.544 3.456 5 O -0.500 6.500 6 C -0.232 4.232 7 C 0.214 3.786 8 C -0.109 4.109 9 N -0.536 5.536 10 C 0.325 3.675 11 N -0.485 5.485 12 C 0.306 3.694 13 C -0.169 4.169 14 C -0.045 4.045 15 C -0.219 4.219 16 C -0.053 4.053 17 C -0.234 4.234 18 C 0.189 3.811 19 O -0.145 6.145 20 C -0.396 4.396 21 H 0.094 0.906 22 C 0.045 3.955 23 N -0.844 5.844 24 Si 0.941 3.059 25 H -0.272 1.272 26 H -0.276 1.276 27 H -0.266 1.266 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.200 0.800 37 H 0.122 0.878 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.133 0.867 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.210 -10.754 5.992 12.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.259 6.259 4 C 0.386 3.614 5 O -0.388 6.388 6 C -0.238 4.238 7 C 0.066 3.934 8 C -0.166 4.166 9 N -0.252 5.252 10 C 0.038 3.962 11 N -0.198 5.198 12 C 0.161 3.839 13 C -0.171 4.171 14 C -0.065 4.065 15 C -0.238 4.238 16 C -0.072 4.072 17 C -0.253 4.253 18 C 0.131 3.869 19 O -0.044 6.044 20 C -0.472 4.472 21 H 0.111 0.889 22 C -0.162 4.162 23 N -0.477 5.477 24 Si 0.766 3.234 25 H -0.198 1.198 26 H -0.201 1.201 27 H -0.190 1.190 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.216 0.784 37 H 0.140 0.860 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.151 0.849 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.354 -9.673 6.284 11.541 hybrid contribution -0.850 -0.421 -0.858 1.279 sum -0.495 -10.094 5.425 11.470 Atomic orbital electron populations 1.21809 0.92577 1.02747 1.03885 1.23068 0.95521 0.80184 1.02566 1.86722 1.23543 1.32201 1.83439 1.20492 0.80810 0.88868 0.71194 1.90810 1.60493 1.41970 1.45528 1.20611 1.10835 0.95695 0.96669 1.21534 0.88707 0.89235 0.93879 1.20833 1.02699 1.00673 0.92411 1.68256 1.16289 1.09403 1.31246 1.25122 0.89719 0.99160 0.82168 1.68802 1.12924 1.08704 1.29381 1.20032 0.85180 0.87606 0.91035 1.17387 1.11884 0.95481 0.92381 1.20953 0.96466 0.91848 0.97190 1.20474 1.07602 1.00754 0.94927 1.20923 0.94641 0.93797 0.97805 1.21141 1.08789 0.97023 0.98324 1.19161 0.90408 0.86073 0.91236 1.84018 1.55248 1.21952 1.43230 1.21421 1.25717 0.96167 1.03893 0.88865 1.25331 0.97855 0.95079 0.97921 1.70051 1.41219 1.09045 1.27345 0.85708 0.79433 0.78596 0.79706 1.19786 1.20103 1.19043 0.91529 0.91096 0.90303 0.90905 0.91304 0.89333 0.89101 0.90710 0.78399 0.85993 0.86996 0.86969 0.84906 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.29 37.16 0.38 -1.17 16 2 C 0.06 0.76 6.20 37.16 0.23 0.99 16 3 O -0.34 -5.79 10.23 -40.64 -0.42 -6.20 16 4 C 0.54 9.79 4.23 34.47 0.15 9.94 16 5 O -0.50 -9.10 15.23 -19.27 -0.29 -9.39 16 6 C -0.23 -4.51 5.78 -104.41 -0.60 -5.11 16 7 C 0.21 3.70 6.87 -81.84 -0.56 3.14 16 8 C -0.11 -1.38 9.85 36.01 0.35 -1.02 16 9 N -0.54 -9.62 10.35 -10.52 -0.11 -9.72 16 10 C 0.33 6.19 12.26 -92.14 -1.13 5.06 16 11 N -0.49 -10.90 9.88 -10.85 -0.11 -11.01 16 12 C 0.31 6.75 6.05 -82.22 -0.50 6.25 16 13 C -0.17 -3.78 5.31 -104.76 -0.56 -4.34 16 14 C -0.05 -0.89 8.45 -39.23 -0.33 -1.22 16 15 C -0.22 -3.87 10.03 -39.60 -0.40 -4.27 16 16 C -0.05 -0.95 10.03 -39.54 -0.40 -1.35 16 17 C -0.23 -4.98 9.12 -39.44 -0.36 -5.34 16 18 C 0.19 4.60 6.64 -38.65 -0.26 4.35 16 19 O -0.14 -4.05 8.81 0.63 0.01 -4.04 16 20 C -0.40 -10.74 9.44 30.90 0.29 -10.45 16 21 H 0.09 2.32 5.30 -52.49 -0.28 2.04 16 22 C 0.04 1.19 5.49 -17.51 -0.10 1.10 16 23 N -0.84 -23.98 13.67 55.48 0.76 -23.22 16 24 Si 0.94 19.89 29.55 -169.99 -5.02 14.87 16 25 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 26 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 27 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.59 8.14 -51.92 -0.42 0.16 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 0.89 7.18 -51.93 -0.37 0.52 16 36 H 0.20 3.09 8.06 -52.49 -0.42 2.67 16 37 H 0.12 2.31 6.21 -52.49 -0.33 1.99 16 38 H 0.11 1.66 8.06 -52.48 -0.42 1.23 16 39 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.13 2.77 5.72 -52.49 -0.30 2.47 16 41 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 358.95 15.07 5.41 5.41 Total: -1.00 -32.48 358.95 -8.20 -40.68 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -4.64 Total: 6.06 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -3.78 Total: -3.44 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.54 Total: -43.95 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.70 Total: -19.63 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.48 -8.20 -40.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585617.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.712 kcal (2) G-P(sol) polarization free energy of solvation -32.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds