Wall clock time and date at job start Tue Mar 31 2020 16:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45198 * 109.46795 * 2 1 4 4 C 1.34754 * 116.99755 * 179.97438 * 3 2 1 5 5 O 1.21504 * 120.00439 * 0.02562 * 4 3 2 6 6 C 1.47429 * 119.99667 * 179.97438 * 4 3 2 7 7 C 1.39876 * 121.01018 * 90.02915 * 6 4 3 8 8 C 1.50701 * 120.49776 * 359.95045 * 7 6 4 9 9 N 1.32150 * 119.00135 * 179.97438 * 7 6 4 10 10 C 1.31989 * 121.24551 * 359.97438 * 9 7 6 11 11 N 1.31621 * 122.26838 * 359.70844 * 10 9 7 12 12 C 1.33163 * 120.82819 * 0.58465 * 11 10 9 13 13 C 1.47866 * 120.66225 * 179.71116 * 12 11 10 14 14 C 1.39523 * 120.18339 * 129.51708 * 13 12 11 15 15 C 1.37894 * 119.92822 * 179.97438 * 14 13 12 16 16 C 1.38529 * 120.30597 * 359.97438 * 15 14 13 17 17 C 1.38062 * 120.37001 * 0.02562 * 16 15 14 18 18 C 1.38796 * 120.06337 * 0.02562 * 17 16 15 19 19 O 1.35585 * 120.14938 * 179.97438 * 18 17 16 20 20 C 1.34805 * 116.99805 * 5.77891 * 19 18 17 21 21 H 1.07999 * 120.00264 * 5.45995 * 20 19 18 22 22 C 1.38690 * 119.99513 * 185.45686 * 20 19 18 23 23 N 1.31530 * 119.99959 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99694 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47447 * 90.00071 * 24 22 20 26 26 H 1.48507 * 109.47053 * 210.00065 * 24 22 20 27 27 H 1.48502 * 109.47156 * 329.99857 * 24 22 20 28 28 H 1.09003 * 109.46960 * 299.99309 * 1 2 3 29 29 H 1.08994 * 109.47391 * 59.99737 * 1 2 3 30 30 H 1.09009 * 109.46820 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46960 * 240.00690 * 2 1 3 32 32 H 1.08994 * 109.47391 * 120.00263 * 2 1 3 33 33 H 1.08997 * 109.47149 * 90.00633 * 8 7 6 34 34 H 1.09004 * 109.47298 * 209.99928 * 8 7 6 35 35 H 1.08993 * 109.47593 * 330.00209 * 8 7 6 36 36 H 1.07998 * 118.86738 * 179.97438 * 10 9 7 37 37 H 1.07999 * 120.03152 * 0.02562 * 14 13 12 38 38 H 1.08003 * 119.84611 * 179.97438 * 15 14 13 39 39 H 1.07999 * 119.81655 * 180.02562 * 16 15 14 40 40 H 1.07997 * 119.96554 * 179.72166 * 17 16 15 41 41 H 0.96999 * 119.99354 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5456 0.0005 5 8 4.0901 0.5820 0.0005 6 6 3.9133 2.9079 0.0000 7 6 4.1887 3.5743 1.1986 8 6 3.9129 2.9110 2.5233 9 7 4.6938 4.7946 1.1518 10 6 4.9412 5.3895 -0.0002 11 7 4.7070 4.8064 -1.1567 12 6 4.1929 3.5791 -1.2105 13 6 3.9253 2.9300 -2.5119 14 6 4.3944 1.6400 -2.7619 15 6 4.1414 1.0395 -3.9771 16 6 3.4224 1.7109 -4.9525 17 6 2.9524 2.9877 -4.7184 18 6 3.1991 3.6072 -3.5010 19 8 2.7387 4.8613 -3.2695 20 6 1.9468 5.4067 -4.2143 21 1 1.6341 4.8168 -5.0632 22 6 1.5337 6.7254 -4.0961 23 7 1.9142 7.4435 -3.0620 24 14 0.4358 7.4809 -5.4050 25 1 -0.9878 7.2629 -5.0432 26 1 0.7056 8.9384 -5.4964 27 1 0.7169 6.8423 -6.7159 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 1.8934 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 4.7958 2.3577 2.8434 34 1 3.6710 3.6706 3.2667 35 1 3.0725 2.2249 2.4182 36 1 5.3538 6.3875 0.0064 37 1 4.9543 1.1121 -2.0041 38 1 4.5055 0.0410 -4.1694 39 1 3.2285 1.2329 -5.9013 40 1 2.3964 3.5069 -5.4850 41 1 1.6255 8.3659 -2.9796 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243585617.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:48 Heat of formation + Delta-G solvation = -57.598835 kcal Electronic energy + Delta-G solvation = -28284.514645 eV Core-core repulsion = 24322.923585 eV Total energy + Delta-G solvation = -3961.591060 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.53488 -41.13291 -40.71780 -38.26166 -37.72458 -35.75424 -34.52026 -34.30229 -32.56184 -31.54895 -30.62381 -29.69477 -27.39257 -26.81066 -24.79928 -24.12002 -23.31046 -22.48159 -22.22091 -19.93209 -19.33815 -19.20465 -18.76383 -18.01156 -17.65769 -17.27847 -16.54882 -16.45390 -15.99752 -15.92348 -15.55368 -15.39923 -14.87945 -14.85297 -14.52691 -14.36700 -14.26500 -13.98488 -13.66950 -13.57447 -13.48450 -13.13184 -12.99398 -12.84861 -12.65112 -12.52888 -12.50919 -12.40327 -12.14527 -11.61602 -11.60045 -11.56016 -11.33999 -10.84270 -10.79746 -10.38074 -9.79252 -9.07334 -8.48301 -6.15657 -0.63328 -0.23301 0.49114 0.64412 0.80093 1.34491 1.43752 1.51554 1.53374 2.14567 2.52211 2.74131 2.87746 2.93629 3.05208 3.27640 3.33489 3.51388 3.79317 4.00812 4.03147 4.04919 4.09101 4.22365 4.23323 4.33234 4.47512 4.52215 4.54037 4.61461 4.75392 4.84852 4.90226 4.90674 5.01738 5.04467 5.09878 5.22402 5.31529 5.45928 5.53995 5.62039 5.83294 5.96223 6.06578 6.47011 6.94042 6.96655 7.72055 8.72402 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.010456 B = 0.005043 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.251937 B = 5550.622945 C = 6405.265919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 O -0.358 6.358 4 C 0.551 3.449 5 O -0.505 6.505 6 C -0.245 4.245 7 C 0.213 3.787 8 C -0.105 4.105 9 N -0.531 5.531 10 C 0.317 3.683 11 N -0.526 5.526 12 C 0.278 3.722 13 C -0.179 4.179 14 C -0.053 4.053 15 C -0.194 4.194 16 C -0.042 4.042 17 C -0.246 4.246 18 C 0.155 3.845 19 O -0.195 6.195 20 C -0.420 4.420 21 H 0.104 0.896 22 C -0.014 4.014 23 N -0.903 5.903 24 Si 1.016 2.984 25 H -0.264 1.264 26 H -0.273 1.273 27 H -0.251 1.251 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.223 0.777 37 H 0.130 0.870 38 H 0.156 0.844 39 H 0.159 0.841 40 H 0.131 0.869 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.611 -13.743 5.799 14.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.022 4.022 3 O -0.275 6.275 4 C 0.394 3.606 5 O -0.394 6.394 6 C -0.251 4.251 7 C 0.065 3.935 8 C -0.162 4.162 9 N -0.247 5.247 10 C 0.030 3.970 11 N -0.240 5.240 12 C 0.134 3.866 13 C -0.181 4.181 14 C -0.072 4.072 15 C -0.212 4.212 16 C -0.060 4.060 17 C -0.265 4.265 18 C 0.101 3.899 19 O -0.098 6.098 20 C -0.496 4.496 21 H 0.122 0.878 22 C -0.214 4.214 23 N -0.539 5.539 24 Si 0.835 3.165 25 H -0.189 1.189 26 H -0.197 1.197 27 H -0.174 1.174 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.130 0.870 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.102 0.898 36 H 0.239 0.761 37 H 0.147 0.853 38 H 0.173 0.827 39 H 0.176 0.824 40 H 0.149 0.851 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.036 -12.734 6.085 14.113 hybrid contribution -0.592 0.161 -0.701 0.931 sum -0.628 -12.573 5.384 13.691 Atomic orbital electron populations 1.21859 0.90713 1.04692 1.03275 1.23479 0.96991 0.78251 1.03498 1.86716 1.22739 1.34965 1.83060 1.20167 0.81236 0.88080 0.71154 1.90788 1.60710 1.41809 1.46049 1.20855 1.11006 0.96712 0.96499 1.22359 0.86966 0.88849 0.95303 1.21001 1.03996 1.01197 0.90010 1.68384 1.16176 1.09755 1.30336 1.25630 0.89382 1.00037 0.81909 1.68750 1.14588 1.09524 1.31173 1.20245 0.86243 0.88078 0.92040 1.17807 1.11351 0.96461 0.92488 1.21174 0.96610 0.90973 0.98493 1.21044 1.04856 1.02015 0.93317 1.21388 0.92820 0.92170 0.99627 1.21339 1.09319 0.98587 0.97294 1.19740 0.91482 0.85685 0.92995 1.84005 1.57507 1.23851 1.44413 1.21894 1.26463 0.96881 1.04322 0.87850 1.26552 0.99306 0.95248 1.00258 1.70205 1.44127 1.09453 1.30104 0.84627 0.77274 0.77519 0.77062 1.18942 1.19739 1.17416 0.91110 0.92734 0.87005 0.91044 0.89275 0.87032 0.87267 0.89838 0.76133 0.85250 0.82651 0.82370 0.85115 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 10.29 71.98 0.74 -1.96 16 2 C 0.05 1.18 6.20 71.98 0.45 1.63 16 3 O -0.36 -11.85 10.23 -56.65 -0.58 -12.43 16 4 C 0.55 19.45 4.23 70.24 0.30 19.75 16 5 O -0.50 -17.59 15.23 19.82 0.30 -17.29 16 6 C -0.24 -9.63 5.78 -19.73 -0.11 -9.74 16 7 C 0.21 7.30 6.87 42.91 0.29 7.59 16 8 C -0.11 -2.44 9.85 71.24 0.70 -1.74 16 9 N -0.53 -19.19 10.35 -187.20 -1.94 -21.13 16 10 C 0.32 12.59 12.26 180.88 2.22 14.81 16 11 N -0.53 -25.01 9.88 -188.23 -1.86 -26.87 16 12 C 0.28 12.75 6.05 42.22 0.26 13.01 16 13 C -0.18 -8.21 5.31 -19.95 -0.11 -8.31 16 14 C -0.05 -2.04 8.45 22.50 0.19 -1.85 16 15 C -0.19 -6.19 10.03 22.26 0.22 -5.96 16 16 C -0.04 -1.38 10.03 22.30 0.22 -1.15 16 17 C -0.25 -10.48 9.12 22.36 0.20 -10.28 16 18 C 0.16 7.85 6.64 22.87 0.15 8.01 16 19 O -0.19 -11.57 8.81 -20.67 -0.18 -11.75 16 20 C -0.42 -23.96 9.44 67.93 0.64 -23.32 16 21 H 0.10 5.36 5.30 -2.91 -0.02 5.34 16 22 C -0.01 -0.78 5.49 84.85 0.47 -0.31 16 23 N -0.90 -54.49 13.67 21.62 0.30 -54.19 16 24 Si 1.02 42.05 29.55 68.60 2.03 44.08 16 25 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 26 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 27 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 32 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.08 1.82 7.18 -2.39 -0.02 1.80 16 36 H 0.22 7.25 8.06 -2.91 -0.02 7.23 16 37 H 0.13 4.72 6.21 -2.91 -0.02 4.71 16 38 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 39 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16 40 H 0.13 5.51 5.72 -2.91 -0.02 5.49 16 41 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -76.67 358.95 5.98 -70.69 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: 1.08 Total: 28.74 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 6.83 Total: 0.16 kcal Atomic # 7 Polarization: -98.69 SS G_CDS: -3.50 Total: -102.19 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -0.46 Total: -41.47 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -76.67 5.98 -70.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585617.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.095 kcal (2) G-P(sol) polarization free energy of solvation -76.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds