Wall clock time and date at job start Tue Mar 31 2020 16:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45200 * 109.47188 * 2 1 4 4 C 1.34230 * 117.00087 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99835 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00106 * 180.02562 * 4 3 2 7 7 C 1.50702 * 109.47236 * 180.02562 * 6 4 3 8 8 C 1.38316 * 120.85397 * 259.16965 * 7 6 4 9 9 N 1.32447 * 119.19657 * 179.74219 * 8 7 6 10 10 C 1.31842 * 121.06406 * 0.56410 * 9 8 7 11 11 N 1.31643 * 121.88886 * 359.68646 * 10 9 8 12 12 C 1.33220 * 120.67977 * 0.02562 * 11 10 9 13 13 C 1.48184 * 120.56265 * 179.97438 * 12 11 10 14 14 C 1.39514 * 120.05360 * 48.69603 * 13 12 11 15 15 C 1.37785 * 119.93903 * 179.76513 * 14 13 12 16 16 C 1.39036 * 120.05721 * 0.54068 * 15 14 13 17 17 O 1.35665 * 119.94112 * 179.71342 * 16 15 14 18 18 C 1.34809 * 116.99766 * 185.57372 * 17 16 15 19 19 H 1.08002 * 120.00410 * 354.95102 * 18 17 16 20 20 C 1.38676 * 120.00079 * 174.94431 * 18 17 16 21 21 N 1.31548 * 119.99819 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00280 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46814 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46711 * 119.99930 * 22 20 18 25 25 H 1.48489 * 109.47337 * 240.00326 * 22 20 18 26 26 C 1.39028 * 120.11595 * 359.69334 * 16 15 14 27 27 C 1.37793 * 120.05339 * 0.04784 * 26 16 15 28 28 H 1.09007 * 109.46632 * 299.99939 * 1 2 3 29 29 H 1.08997 * 109.47123 * 59.99604 * 1 2 3 30 30 H 1.08997 * 109.47521 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47256 * 240.00183 * 2 1 3 32 32 H 1.09006 * 109.47192 * 120.00229 * 2 1 3 33 33 H 1.09004 * 109.46734 * 299.99771 * 6 4 3 34 34 H 1.08994 * 109.47212 * 60.00081 * 6 4 3 35 35 H 1.08000 * 120.40614 * 0.02562 * 8 7 6 36 36 H 1.08009 * 119.05241 * 179.70345 * 10 9 8 37 37 H 1.08004 * 120.02675 * 0.03174 * 14 13 12 38 38 H 1.08006 * 119.97286 * 180.25398 * 15 14 13 39 39 H 0.96993 * 119.99490 * 179.97438 * 21 20 18 40 40 H 1.07994 * 119.97727 * 180.02562 * 26 16 15 41 41 H 1.08001 * 120.02679 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 6 5.4257 2.8585 0.0010 8 6 6.1458 3.0437 1.1674 9 7 7.4673 2.9621 1.1306 10 6 8.1027 2.7191 0.0013 11 7 7.4602 2.5411 -1.1338 12 6 6.1302 2.6021 -1.1789 13 6 5.4096 2.4020 -2.4582 14 6 5.7187 1.3109 -3.2709 15 6 5.0438 1.1244 -4.4576 16 6 4.0634 2.0285 -4.8507 17 8 3.4045 1.8458 -6.0224 18 6 2.5497 2.8168 -6.4017 19 1 2.3531 3.6505 -5.7439 20 6 1.9227 2.7452 -7.6365 21 7 2.1618 1.7295 -8.4377 22 14 0.7387 4.0910 -8.1624 23 1 0.6440 5.1137 -7.0899 24 1 1.2343 4.7266 -9.4096 25 1 -0.6028 3.5027 -8.4059 26 6 3.7569 3.1193 -4.0450 27 6 4.4252 3.3074 -2.8547 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.5851 3.4697 -0.8889 34 1 3.5845 3.4692 0.8911 35 1 5.6366 3.2477 2.0976 36 1 9.1814 2.6642 0.0077 37 1 6.4832 0.6108 -2.9680 38 1 5.2798 0.2777 -5.0852 39 1 1.7230 1.6793 -9.3012 40 1 2.9948 3.8199 -4.3523 41 1 4.1865 4.1546 -2.2289 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243586778.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:41 Heat of formation + Delta-G solvation = -38.380418 kcal Electronic energy + Delta-G solvation = -27344.778921 eV Core-core repulsion = 23384.021234 eV Total energy + Delta-G solvation = -3960.757687 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -41.21714 -40.16120 -39.08720 -36.89162 -36.56193 -33.95729 -33.65995 -32.39070 -31.78760 -30.41024 -29.37371 -28.22183 -25.69600 -24.14592 -24.06610 -22.76310 -22.03208 -21.08192 -20.87394 -18.19439 -17.84722 -17.74066 -17.47588 -16.68852 -16.53517 -16.28444 -14.90108 -14.73377 -14.64547 -14.53473 -14.31016 -14.23378 -13.81848 -13.69181 -13.57553 -13.24421 -12.99120 -12.85826 -12.63845 -12.38525 -11.85018 -11.83549 -11.65469 -11.56290 -11.28639 -11.12390 -10.86714 -10.77050 -10.54444 -10.52913 -10.52150 -10.43762 -9.57849 -9.36676 -9.10093 -8.93327 -8.36689 -7.32474 -6.61160 -4.18424 0.80855 1.05250 2.07439 2.18831 2.27924 2.69710 3.03731 3.05452 3.11151 3.83740 3.86095 4.12167 4.18900 4.36473 4.46982 4.67712 4.71530 4.79190 4.86812 4.94037 4.95120 5.11931 5.17899 5.20560 5.32761 5.47336 5.54951 5.62483 5.65586 5.70653 5.83181 5.89474 6.03455 6.21674 6.37245 6.47257 6.51819 6.69052 6.88103 6.99006 7.09080 7.18373 7.25909 7.60494 7.79841 7.83317 8.18235 8.83676 9.50759 10.55843 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.011140 B = 0.003857 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.754624 B = 7257.278134 C = 8798.786797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.063 3.937 3 O -0.357 6.357 4 C 0.469 3.531 5 O -0.498 6.498 6 C -0.073 4.073 7 C -0.187 4.187 8 C 0.159 3.841 9 N -0.537 5.537 10 C 0.297 3.703 11 N -0.518 5.518 12 C 0.275 3.725 13 C -0.170 4.170 14 C -0.021 4.021 15 C -0.196 4.196 16 C 0.167 3.833 17 O -0.166 6.166 18 C -0.394 4.394 19 H 0.096 0.904 20 C 0.041 3.959 21 N -0.854 5.854 22 Si 0.943 3.057 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.234 4.234 27 C -0.051 4.051 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.130 0.870 34 H 0.115 0.885 35 H 0.163 0.837 36 H 0.193 0.807 37 H 0.116 0.884 38 H 0.122 0.878 39 H 0.272 0.728 40 H 0.134 0.866 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.131 2.337 17.102 17.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.275 6.275 4 C 0.311 3.689 5 O -0.385 6.385 6 C -0.111 4.111 7 C -0.192 4.192 8 C -0.005 4.005 9 N -0.251 5.251 10 C 0.009 3.991 11 N -0.232 5.232 12 C 0.130 3.870 13 C -0.172 4.172 14 C -0.040 4.040 15 C -0.216 4.216 16 C 0.111 3.889 17 O -0.067 6.067 18 C -0.469 4.469 19 H 0.114 0.886 20 C -0.164 4.164 21 N -0.487 5.487 22 Si 0.767 3.233 23 H -0.189 1.189 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.253 4.253 27 C -0.070 4.070 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.148 0.852 34 H 0.133 0.867 35 H 0.180 0.820 36 H 0.210 0.790 37 H 0.134 0.866 38 H 0.140 0.860 39 H 0.082 0.918 40 H 0.151 0.849 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.002 1.682 16.688 16.803 hybrid contribution -1.352 0.517 -0.238 1.467 sum -0.350 2.199 16.450 16.601 Atomic orbital electron populations 1.21806 0.92599 1.02954 1.03583 1.23019 0.95358 0.80099 1.02617 1.86471 1.24302 1.32537 1.84158 1.23345 0.80644 0.92324 0.72599 1.90678 1.60393 1.42926 1.44474 1.20358 0.90718 0.92530 1.07508 1.20967 0.95851 1.06709 0.95647 1.22920 0.89839 0.90811 0.96972 1.68379 1.09922 1.16153 1.30669 1.24920 1.01096 0.90168 0.82945 1.68648 1.09006 1.15690 1.29812 1.20126 0.88555 0.85778 0.92499 1.17759 1.03066 1.01204 0.95174 1.20578 0.96283 0.95362 0.91815 1.20158 1.00130 1.02386 0.98878 1.19502 0.90040 0.92453 0.86865 1.83954 1.48823 1.43076 1.30853 1.21463 1.20808 1.02344 1.02326 0.88633 1.25363 0.98150 0.98201 0.94714 1.70041 1.40487 1.28756 1.09453 0.85610 0.79124 0.79389 0.79130 1.18906 1.19970 1.19980 1.21037 1.05821 1.01839 0.96613 1.20701 0.93891 0.96785 0.95644 0.91682 0.91090 0.90300 0.90919 0.91518 0.85198 0.86688 0.81959 0.79003 0.86615 0.85981 0.91755 0.84855 0.86817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.29 37.16 0.38 -0.99 16 2 C 0.06 0.74 6.19 37.16 0.23 0.97 16 3 O -0.36 -4.78 10.22 -39.26 -0.40 -5.18 16 4 C 0.47 6.72 7.79 36.00 0.28 7.00 16 5 O -0.50 -8.68 15.71 -18.75 -0.29 -8.97 16 6 C -0.07 -0.84 5.41 -29.04 -0.16 -1.00 16 7 C -0.19 -2.54 4.44 -104.01 -0.46 -3.01 16 8 C 0.16 1.93 10.96 -17.26 -0.19 1.75 16 9 N -0.54 -7.21 10.43 -14.65 -0.15 -7.36 16 10 C 0.30 4.03 12.28 -92.24 -1.13 2.90 16 11 N -0.52 -8.39 10.34 -11.12 -0.11 -8.50 16 12 C 0.27 4.49 6.23 -82.60 -0.51 3.97 16 13 C -0.17 -3.05 5.17 -104.86 -0.54 -3.59 16 14 C -0.02 -0.40 9.71 -39.27 -0.38 -0.79 16 15 C -0.20 -4.13 9.98 -39.45 -0.39 -4.52 16 16 C 0.17 3.87 6.65 -38.99 -0.26 3.61 16 17 O -0.17 -4.51 9.75 0.37 0.00 -4.51 16 18 C -0.39 -10.41 9.48 30.89 0.29 -10.12 16 19 H 0.10 2.31 5.19 -52.49 -0.27 2.04 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 21 N -0.85 -24.01 13.67 55.48 0.76 -23.25 16 22 Si 0.94 19.45 29.55 -169.99 -5.02 14.43 16 23 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 26 C -0.23 -4.74 9.15 -39.45 -0.36 -5.10 16 27 C -0.05 -0.89 7.96 -39.27 -0.31 -1.20 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 32 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 33 H 0.13 1.49 4.40 -51.93 -0.23 1.27 16 34 H 0.12 0.86 8.04 -51.93 -0.42 0.44 16 35 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.19 1.91 8.06 -52.48 -0.42 1.49 16 37 H 0.12 2.09 8.06 -52.48 -0.42 1.66 16 38 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 39 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.13 2.64 5.62 -52.49 -0.30 2.35 16 41 H 0.11 1.59 6.35 -52.49 -0.33 1.25 16 LS Contribution 359.00 15.07 5.41 5.41 Total: -1.00 -32.77 359.00 -7.92 -40.69 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -4.49 Total: 6.37 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -3.62 Total: -9.12 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.49 Total: -39.11 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.69 Total: -18.67 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.77 -7.92 -40.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586778.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.307 kcal (2) G-P(sol) polarization free energy of solvation -32.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds