Wall clock time and date at job start Tue Mar 31 2020 16:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45200 * 109.47188 * 2 1 4 4 C 1.34230 * 117.00087 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99835 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00106 * 180.02562 * 4 3 2 7 7 C 1.50702 * 109.47236 * 180.02562 * 6 4 3 8 8 C 1.38316 * 120.85397 * 259.16965 * 7 6 4 9 9 N 1.32447 * 119.19657 * 179.74219 * 8 7 6 10 10 C 1.31842 * 121.06406 * 0.56410 * 9 8 7 11 11 N 1.31643 * 121.88886 * 359.68646 * 10 9 8 12 12 C 1.33220 * 120.67977 * 0.02562 * 11 10 9 13 13 C 1.48184 * 120.56265 * 179.97438 * 12 11 10 14 14 C 1.39514 * 120.05360 * 48.69603 * 13 12 11 15 15 C 1.37785 * 119.93903 * 179.76513 * 14 13 12 16 16 C 1.39036 * 120.05721 * 0.54068 * 15 14 13 17 17 O 1.35665 * 119.94112 * 179.71342 * 16 15 14 18 18 C 1.34809 * 116.99766 * 185.57372 * 17 16 15 19 19 H 1.08002 * 120.00410 * 354.95102 * 18 17 16 20 20 C 1.38676 * 120.00079 * 174.94431 * 18 17 16 21 21 N 1.31548 * 119.99819 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00280 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46814 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46711 * 119.99930 * 22 20 18 25 25 H 1.48489 * 109.47337 * 240.00326 * 22 20 18 26 26 C 1.39028 * 120.11595 * 359.69334 * 16 15 14 27 27 C 1.37793 * 120.05339 * 0.04784 * 26 16 15 28 28 H 1.09007 * 109.46632 * 299.99939 * 1 2 3 29 29 H 1.08997 * 109.47123 * 59.99604 * 1 2 3 30 30 H 1.08997 * 109.47521 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47256 * 240.00183 * 2 1 3 32 32 H 1.09006 * 109.47192 * 120.00229 * 2 1 3 33 33 H 1.09004 * 109.46734 * 299.99771 * 6 4 3 34 34 H 1.08994 * 109.47212 * 60.00081 * 6 4 3 35 35 H 1.08000 * 120.40614 * 0.02562 * 8 7 6 36 36 H 1.08009 * 119.05241 * 179.70345 * 10 9 8 37 37 H 1.08004 * 120.02675 * 0.03174 * 14 13 12 38 38 H 1.08006 * 119.97286 * 180.25398 * 15 14 13 39 39 H 0.96993 * 119.99490 * 179.97438 * 21 20 18 40 40 H 1.07994 * 119.97727 * 180.02562 * 26 16 15 41 41 H 1.08001 * 120.02679 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 6 5.4257 2.8585 0.0010 8 6 6.1458 3.0437 1.1674 9 7 7.4673 2.9621 1.1306 10 6 8.1027 2.7191 0.0013 11 7 7.4602 2.5411 -1.1338 12 6 6.1302 2.6021 -1.1789 13 6 5.4096 2.4020 -2.4582 14 6 5.7187 1.3109 -3.2709 15 6 5.0438 1.1244 -4.4576 16 6 4.0634 2.0285 -4.8507 17 8 3.4045 1.8458 -6.0224 18 6 2.5497 2.8168 -6.4017 19 1 2.3531 3.6505 -5.7439 20 6 1.9227 2.7452 -7.6365 21 7 2.1618 1.7295 -8.4377 22 14 0.7387 4.0910 -8.1624 23 1 0.6440 5.1137 -7.0899 24 1 1.2343 4.7266 -9.4096 25 1 -0.6028 3.5027 -8.4059 26 6 3.7569 3.1193 -4.0450 27 6 4.4252 3.3074 -2.8547 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.5851 3.4697 -0.8889 34 1 3.5845 3.4692 0.8911 35 1 5.6366 3.2477 2.0976 36 1 9.1814 2.6642 0.0077 37 1 6.4832 0.6108 -2.9680 38 1 5.2798 0.2777 -5.0852 39 1 1.7230 1.6793 -9.3012 40 1 2.9948 3.8199 -4.3523 41 1 4.1865 4.1546 -2.2289 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243586778.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:37 Heat of formation + Delta-G solvation = -57.426293 kcal Electronic energy + Delta-G solvation = -27345.604812 eV Core-core repulsion = 23384.021234 eV Total energy + Delta-G solvation = -3961.583578 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -42.33877 -41.25822 -40.76386 -38.44249 -37.74437 -35.12182 -34.85598 -34.20412 -32.66547 -31.99221 -30.76753 -29.36779 -27.52852 -25.38737 -25.16304 -23.76594 -23.56229 -22.58169 -21.92832 -19.96764 -19.24121 -18.89254 -18.62381 -18.16163 -17.59991 -17.37331 -16.44762 -16.29660 -15.96720 -15.65957 -15.62655 -15.55161 -15.27892 -15.11312 -14.61801 -14.56710 -14.28819 -14.16210 -13.62516 -13.59121 -13.45393 -13.11507 -12.88311 -12.72530 -12.64021 -12.52469 -12.43555 -12.07791 -11.92664 -11.73470 -11.61566 -11.53685 -11.25884 -10.87340 -10.44978 -10.21331 -9.94223 -8.99818 -8.50395 -6.18297 -0.36081 -0.02045 0.47322 0.67890 1.18395 1.37704 1.45563 1.56172 1.72788 2.16301 2.63811 2.83794 2.99175 3.11352 3.24762 3.37988 3.46955 3.60926 3.77482 3.83856 3.89931 3.98638 4.05810 4.07327 4.26893 4.32729 4.45102 4.49734 4.52814 4.66246 4.74994 4.84592 4.91019 4.92476 5.08060 5.11440 5.14574 5.30058 5.46231 5.50661 5.52676 5.56333 5.95235 5.97292 6.02065 6.71736 6.93722 7.10189 7.69875 8.72241 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.011140 B = 0.003857 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.754624 B = 7257.278134 C = 8798.786797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.055 3.945 3 O -0.358 6.358 4 C 0.465 3.535 5 O -0.537 6.537 6 C -0.071 4.071 7 C -0.183 4.183 8 C 0.167 3.833 9 N -0.538 5.538 10 C 0.293 3.707 11 N -0.543 5.543 12 C 0.244 3.756 13 C -0.147 4.147 14 C -0.029 4.029 15 C -0.206 4.206 16 C 0.135 3.865 17 O -0.221 6.221 18 C -0.415 4.415 19 H 0.111 0.889 20 C -0.020 4.020 21 N -0.917 5.917 22 Si 1.019 2.981 23 H -0.245 1.245 24 H -0.271 1.271 25 H -0.269 1.269 26 C -0.232 4.232 27 C -0.042 4.042 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.133 0.867 34 H 0.168 0.832 35 H 0.208 0.792 36 H 0.222 0.778 37 H 0.124 0.876 38 H 0.116 0.884 39 H 0.274 0.726 40 H 0.138 0.862 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.512 4.877 21.064 21.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.018 4.018 3 O -0.275 6.275 4 C 0.309 3.691 5 O -0.427 6.427 6 C -0.109 4.109 7 C -0.187 4.187 8 C 0.002 3.998 9 N -0.252 5.252 10 C 0.005 3.995 11 N -0.257 5.257 12 C 0.100 3.900 13 C -0.149 4.149 14 C -0.048 4.048 15 C -0.225 4.225 16 C 0.082 3.918 17 O -0.126 6.126 18 C -0.491 4.491 19 H 0.128 0.872 20 C -0.218 4.218 21 N -0.554 5.554 22 Si 0.838 3.162 23 H -0.168 1.168 24 H -0.196 1.196 25 H -0.194 1.194 26 C -0.251 4.251 27 C -0.061 4.061 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.150 0.850 34 H 0.185 0.815 35 H 0.224 0.776 36 H 0.238 0.762 37 H 0.142 0.858 38 H 0.134 0.866 39 H 0.083 0.917 40 H 0.156 0.844 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.644 4.236 20.708 21.147 hybrid contribution -0.954 -0.339 -1.019 1.436 sum -0.309 3.897 19.689 20.073 Atomic orbital electron populations 1.21818 0.90369 1.04282 1.03825 1.23206 0.97145 0.79489 1.01964 1.86481 1.23983 1.33291 1.83741 1.23975 0.80637 0.93097 0.71393 1.90672 1.61151 1.44421 1.46429 1.20544 0.89150 0.91062 1.10119 1.21136 0.96942 1.05616 0.94986 1.23652 0.89410 0.88729 0.97984 1.68497 1.10730 1.15681 1.30312 1.25508 1.02379 0.89310 0.82284 1.68579 1.09206 1.16466 1.31477 1.20035 0.89175 0.88233 0.92565 1.18115 1.01834 0.99631 0.95304 1.20740 0.96324 0.96327 0.91430 1.20281 1.00290 1.02217 0.99751 1.19951 0.90875 0.94188 0.86741 1.83938 1.51006 1.44581 1.33068 1.21984 1.21086 1.02889 1.03098 0.87171 1.26650 0.99985 1.00756 0.94432 1.70190 1.43191 1.31693 1.10329 0.84514 0.76327 0.76333 0.78983 1.16773 1.19645 1.19405 1.21188 1.06022 1.00802 0.97120 1.21087 0.92620 0.97618 0.94759 0.90083 0.92088 0.88509 0.93227 0.90597 0.84968 0.81486 0.77579 0.76164 0.85809 0.86620 0.91700 0.84427 0.82366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 10.29 71.98 0.74 -1.65 16 2 C 0.06 1.26 6.19 71.98 0.45 1.70 16 3 O -0.36 -8.86 10.22 -51.42 -0.53 -9.39 16 4 C 0.46 12.18 7.79 71.24 0.55 12.73 16 5 O -0.54 -18.02 15.71 21.96 0.34 -17.68 16 6 C -0.07 -1.32 5.41 29.10 0.16 -1.16 16 7 C -0.18 -4.23 4.44 -19.47 -0.09 -4.31 16 8 C 0.17 3.24 10.96 84.62 0.93 4.17 16 9 N -0.54 -12.27 10.43 -200.26 -2.09 -14.36 16 10 C 0.29 7.06 12.28 180.92 2.22 9.28 16 11 N -0.54 -16.41 10.34 -189.09 -1.96 -18.37 16 12 C 0.24 7.36 6.23 41.95 0.26 7.63 16 13 C -0.15 -5.09 5.17 -20.02 -0.10 -5.19 16 14 C -0.03 -1.13 9.71 22.47 0.22 -0.91 16 15 C -0.21 -9.14 9.98 22.35 0.22 -8.92 16 16 C 0.13 6.54 6.65 22.65 0.15 6.69 16 17 O -0.22 -12.85 9.75 -21.58 -0.21 -13.06 16 18 C -0.41 -22.96 9.48 67.92 0.64 -22.32 16 19 H 0.11 5.44 5.19 -2.91 -0.02 5.43 16 20 C -0.02 -1.08 5.49 84.84 0.47 -0.62 16 21 N -0.92 -54.71 13.67 21.62 0.30 -54.42 16 22 Si 1.02 40.68 29.55 68.60 2.03 42.70 16 23 H -0.24 -8.79 7.11 99.48 0.71 -8.08 16 24 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 25 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 26 C -0.23 -9.40 9.15 22.35 0.20 -9.20 16 27 C -0.04 -1.38 7.96 22.47 0.18 -1.20 16 28 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 1.33 8.13 -2.39 -0.02 1.31 16 32 H 0.08 1.56 8.13 -2.38 -0.02 1.54 16 33 H 0.13 2.43 4.40 -2.39 -0.01 2.42 16 34 H 0.17 1.38 8.04 -2.39 -0.02 1.36 16 35 H 0.21 2.10 8.06 -2.91 -0.02 2.08 16 36 H 0.22 3.72 8.06 -2.91 -0.02 3.69 16 37 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 38 H 0.12 5.11 8.06 -2.91 -0.02 5.09 16 39 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 40 H 0.14 5.40 5.62 -2.91 -0.02 5.38 16 41 H 0.16 3.75 6.35 -2.91 -0.02 3.73 16 Total: -1.00 -77.48 359.00 6.17 -71.31 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 1.08 Total: 26.55 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 7.20 Total: -13.28 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -3.75 Total: -87.15 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -0.39 Total: -40.13 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.70 kcal Total: -77.48 6.17 -71.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586778.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.881 kcal (2) G-P(sol) polarization free energy of solvation -77.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.64 seconds