Wall clock time and date at job start Tue Mar 31 2020 16:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45202 * 109.47391 * 2 1 4 4 C 1.34750 * 116.99953 * 180.02562 * 3 2 1 5 5 O 1.21503 * 120.00633 * 0.02562 * 4 3 2 6 6 C 1.47433 * 119.99668 * 180.02562 * 4 3 2 7 7 C 1.39879 * 121.01069 * 7.14390 * 6 4 3 8 8 N 1.32154 * 118.99726 * 180.02562 * 7 6 4 9 9 C 1.31992 * 121.24226 * 0.02562 * 8 7 6 10 10 C 1.50695 * 118.86517 * 179.97438 * 9 8 7 11 11 N 1.31627 * 122.26247 * 359.97438 * 9 8 7 12 12 C 1.33139 * 120.83910 * 359.71243 * 11 9 8 13 13 C 1.47914 * 120.66339 * 180.30304 * 12 11 9 14 14 C 1.39646 * 120.06515 * 53.42255 * 13 12 11 15 15 C 1.37732 * 119.92941 * 179.74057 * 14 13 12 16 16 C 1.39078 * 120.06713 * 0.52774 * 15 14 13 17 17 O 1.35628 * 119.92932 * 179.69612 * 16 15 14 18 18 C 1.34808 * 116.99523 * 186.65240 * 17 16 15 19 19 H 1.08001 * 120.00605 * 354.84607 * 18 17 16 20 20 C 1.38692 * 119.99647 * 174.84283 * 18 17 16 21 21 N 1.31531 * 120.00043 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00201 * 0.02562 * 20 18 17 23 23 H 1.48507 * 109.46824 * 89.99856 * 22 20 18 24 24 H 1.48499 * 109.47098 * 209.99712 * 22 20 18 25 25 H 1.48500 * 109.46930 * 329.99863 * 22 20 18 26 26 C 1.39080 * 120.13593 * 359.72860 * 16 15 14 27 27 C 1.37729 * 120.06815 * 0.02562 * 26 16 15 28 28 H 1.08999 * 109.47298 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46902 * 300.00023 * 1 2 3 30 30 H 1.09003 * 109.47076 * 59.99260 * 1 2 3 31 31 H 1.09000 * 109.47131 * 120.00214 * 2 1 3 32 32 H 1.09004 * 109.46902 * 239.99976 * 2 1 3 33 33 H 1.08000 * 120.50120 * 0.02562 * 7 6 4 34 34 H 1.08994 * 109.47481 * 89.99788 * 10 9 8 35 35 H 1.09001 * 109.46750 * 209.99886 * 10 9 8 36 36 H 1.09000 * 109.46904 * 329.98663 * 10 9 8 37 37 H 1.07995 * 120.03473 * 359.97438 * 14 13 12 38 38 H 1.08006 * 119.96541 * 180.23180 * 15 14 13 39 39 H 0.96999 * 120.00292 * 179.97438 * 21 20 18 40 40 H 1.08005 * 119.97004 * 180.02562 * 26 16 15 41 41 H 1.08005 * 120.03614 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3500 1.5454 -0.0005 5 8 4.0902 0.5819 -0.0015 6 6 3.9135 2.9078 0.0000 7 6 3.0898 4.0284 0.1502 8 7 3.6371 5.2312 0.1443 9 6 4.9394 5.3901 -0.0005 10 6 5.5064 6.7863 0.0001 11 7 5.7597 4.3710 -0.1454 12 6 5.3017 3.1208 -0.1460 13 6 6.2278 1.9782 -0.3024 14 6 7.3329 1.8527 0.5420 15 6 8.1905 0.7847 0.3973 16 6 7.9629 -0.1622 -0.5956 17 8 8.8127 -1.2094 -0.7395 18 6 8.6173 -2.0142 -1.8032 19 1 7.7638 -1.8609 -2.4470 20 6 9.5125 -3.0392 -2.0708 21 7 9.3222 -3.8242 -3.1089 22 14 10.9883 -3.3050 -0.9570 23 1 10.6225 -4.2441 0.1337 24 1 12.1083 -3.8763 -1.7473 25 1 11.4073 -2.0060 -0.3721 26 6 6.8661 -0.0370 -1.4416 27 6 6.0021 1.0260 -1.2986 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 2.0226 3.9122 0.2691 34 1 5.7624 7.0740 1.0198 35 1 6.4016 6.8151 -0.6212 36 1 4.7655 7.4795 -0.3980 37 1 7.5128 2.5902 1.3101 38 1 9.0434 0.6850 1.0526 39 1 9.9484 -4.5409 -3.2964 40 1 6.6917 -0.7741 -2.2114 41 1 5.1508 1.1229 -1.9561 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243586820.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:53 Heat of formation + Delta-G solvation = -30.928318 kcal Electronic energy + Delta-G solvation = -27066.528710 eV Core-core repulsion = 23106.094170 eV Total energy + Delta-G solvation = -3960.434540 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -41.41448 -40.00922 -39.14883 -37.11914 -36.28082 -33.94251 -33.61413 -32.44728 -31.81668 -30.36533 -29.30785 -28.96171 -25.68435 -24.41238 -24.13191 -23.06049 -22.10518 -21.31148 -20.64815 -18.42110 -17.93884 -17.55200 -17.41886 -16.64003 -16.53629 -16.39572 -15.38799 -14.80472 -14.62307 -14.22060 -14.00001 -13.94162 -13.83905 -13.67175 -13.45884 -13.00356 -12.83924 -12.79490 -12.60543 -12.38966 -12.28959 -12.06224 -11.90493 -11.71568 -11.49265 -11.37684 -11.01670 -10.82659 -10.66873 -10.59384 -10.21681 -10.16874 -9.65755 -9.41298 -9.36033 -8.90689 -8.20239 -7.33306 -6.49858 -4.14507 0.19594 0.84753 2.13981 2.16985 2.47770 2.53827 3.19116 3.21852 3.36398 3.60949 3.73023 3.88430 4.17802 4.24070 4.50209 4.57812 4.75145 4.77473 4.81051 4.88096 5.00668 5.05332 5.13094 5.25992 5.32425 5.49893 5.52121 5.58314 5.59476 5.65941 5.72264 5.75611 6.06981 6.17425 6.23533 6.32229 6.44535 6.72083 6.81168 6.98324 7.11601 7.23467 7.51776 7.73195 7.74368 7.93118 7.95697 8.84356 9.45754 10.56982 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.012103 B = 0.003543 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.920611 B = 7900.982141 C = 9783.446025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.361 6.361 4 C 0.509 3.491 5 O -0.463 6.463 6 C -0.247 4.247 7 C 0.210 3.790 8 N -0.542 5.542 9 C 0.345 3.655 10 C -0.088 4.088 11 N -0.519 5.519 12 C 0.318 3.682 13 C -0.169 4.169 14 C -0.024 4.024 15 C -0.204 4.204 16 C 0.182 3.818 17 O -0.207 6.207 18 C -0.389 4.389 19 H 0.109 0.891 20 C 0.065 3.935 21 N -0.873 5.873 22 Si 0.906 3.094 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.258 1.258 26 C -0.226 4.226 27 C 0.012 3.988 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.179 0.821 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.281 0.719 40 H 0.136 0.864 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.408 14.552 6.596 21.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.010 4.010 3 O -0.279 6.279 4 C 0.350 3.650 5 O -0.348 6.348 6 C -0.253 4.253 7 C 0.044 3.956 8 N -0.258 5.258 9 C 0.079 3.921 10 C -0.147 4.147 11 N -0.234 5.234 12 C 0.174 3.826 13 C -0.171 4.171 14 C -0.043 4.043 15 C -0.223 4.223 16 C 0.128 3.872 17 O -0.111 6.111 18 C -0.464 4.464 19 H 0.126 0.874 20 C -0.139 4.139 21 N -0.510 5.510 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.182 1.182 26 C -0.245 4.245 27 C -0.008 4.008 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.196 0.804 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.133 0.867 38 H 0.139 0.861 39 H 0.091 0.909 40 H 0.153 0.847 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.522 14.875 6.577 21.151 hybrid contribution 0.013 -1.374 0.258 1.398 sum -13.508 13.502 6.835 20.285 Atomic orbital electron populations 1.21807 0.92638 1.03043 1.03349 1.23047 0.95103 0.79716 1.03155 1.86483 1.23799 1.32809 1.84823 1.20495 0.80751 0.89248 0.74478 1.91039 1.59126 1.41691 1.42936 1.20850 0.96013 0.93128 1.15283 1.23542 1.00677 0.86070 0.85347 1.68320 1.13854 1.25644 1.17952 1.23569 0.85648 0.96396 0.86477 1.20651 1.01828 0.87985 1.04199 1.68702 1.39391 0.98432 1.16881 1.20435 0.88946 0.91128 0.82057 1.17651 0.99026 0.96096 1.04363 1.20471 0.91307 0.95786 0.96760 1.20031 1.03227 0.96351 1.02734 1.19254 0.88928 0.86325 0.92680 1.83525 1.49329 1.33399 1.44814 1.20847 1.12660 1.09711 1.03212 0.87359 1.24506 0.98421 0.94670 0.96320 1.69630 1.37566 1.17740 1.26023 0.86173 0.80915 0.79668 0.80161 1.19757 1.20668 1.18171 1.21041 0.97537 1.01270 1.04701 1.20412 0.95102 0.91324 0.93925 0.90148 0.91573 0.91508 0.90972 0.90843 0.80365 0.89200 0.89186 0.89389 0.86707 0.86067 0.90856 0.84661 0.88038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.29 37.16 0.38 -0.69 16 2 C 0.06 0.65 6.20 37.16 0.23 0.88 16 3 O -0.36 -4.36 9.60 -40.63 -0.39 -4.75 16 4 C 0.51 7.53 7.46 34.48 0.26 7.79 16 5 O -0.46 -8.31 11.99 -19.27 -0.23 -8.54 16 6 C -0.25 -3.55 5.90 -104.41 -0.62 -4.17 16 7 C 0.21 2.50 10.90 -16.80 -0.18 2.32 16 8 N -0.54 -6.77 10.30 -10.44 -0.11 -6.88 16 9 C 0.34 4.40 7.64 -157.17 -1.20 3.20 16 10 C -0.09 -0.76 10.30 36.00 0.37 -0.39 16 11 N -0.52 -7.94 10.26 -7.03 -0.07 -8.02 16 12 C 0.32 5.20 6.31 -82.21 -0.52 4.68 16 13 C -0.17 -3.15 4.63 -104.88 -0.49 -3.63 16 14 C -0.02 -0.44 9.75 -39.24 -0.38 -0.83 16 15 C -0.20 -4.15 9.98 -39.45 -0.39 -4.54 16 16 C 0.18 4.26 6.65 -38.96 -0.26 4.00 16 17 O -0.21 -5.45 8.58 0.49 0.00 -5.44 16 18 C -0.39 -10.88 9.94 30.90 0.31 -10.57 16 19 H 0.11 3.10 5.43 -52.49 -0.28 2.81 16 20 C 0.07 1.81 5.49 -17.51 -0.10 1.71 16 21 N -0.87 -24.86 13.96 55.48 0.77 -24.09 16 22 Si 0.91 21.38 28.62 -169.99 -4.86 16.51 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.26 -6.10 7.11 56.52 0.40 -5.69 16 26 C -0.23 -5.04 9.15 -39.46 -0.36 -5.40 16 27 C 0.01 0.23 6.71 -39.24 -0.26 -0.03 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.18 1.56 7.73 -52.49 -0.41 1.15 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.11 1.85 8.06 -52.49 -0.42 1.42 16 38 H 0.12 2.26 8.06 -52.48 -0.42 1.83 16 39 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.14 3.14 5.64 -52.48 -0.30 2.84 16 41 H 0.10 1.85 7.41 -52.48 -0.39 1.47 16 LS Contribution 357.69 15.07 5.39 5.39 Total: -1.00 -31.53 357.69 -7.45 -38.98 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -4.74 Total: 2.48 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -3.21 Total: -5.65 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.59 Total: -38.98 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.62 Total: -18.73 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.86 Total: 16.51 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.53 -7.45 -38.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586820.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.050 kcal (2) G-P(sol) polarization free energy of solvation -31.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds