Wall clock time and date at job start Tue Mar 31 2020 16:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45202 * 109.47391 * 2 1 4 4 C 1.34750 * 116.99953 * 180.02562 * 3 2 1 5 5 O 1.21503 * 120.00633 * 0.02562 * 4 3 2 6 6 C 1.47433 * 119.99668 * 180.02562 * 4 3 2 7 7 C 1.39879 * 121.01069 * 7.14390 * 6 4 3 8 8 N 1.32154 * 118.99726 * 180.02562 * 7 6 4 9 9 C 1.31992 * 121.24226 * 0.02562 * 8 7 6 10 10 C 1.50695 * 118.86517 * 179.97438 * 9 8 7 11 11 N 1.31627 * 122.26247 * 359.97438 * 9 8 7 12 12 C 1.33139 * 120.83910 * 359.71243 * 11 9 8 13 13 C 1.47914 * 120.66339 * 180.30304 * 12 11 9 14 14 C 1.39646 * 120.06515 * 53.42255 * 13 12 11 15 15 C 1.37732 * 119.92941 * 179.74057 * 14 13 12 16 16 C 1.39078 * 120.06713 * 0.52774 * 15 14 13 17 17 O 1.35628 * 119.92932 * 179.69612 * 16 15 14 18 18 C 1.34808 * 116.99523 * 186.65240 * 17 16 15 19 19 H 1.08001 * 120.00605 * 354.84607 * 18 17 16 20 20 C 1.38692 * 119.99647 * 174.84283 * 18 17 16 21 21 N 1.31531 * 120.00043 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00201 * 0.02562 * 20 18 17 23 23 H 1.48507 * 109.46824 * 89.99856 * 22 20 18 24 24 H 1.48499 * 109.47098 * 209.99712 * 22 20 18 25 25 H 1.48500 * 109.46930 * 329.99863 * 22 20 18 26 26 C 1.39080 * 120.13593 * 359.72860 * 16 15 14 27 27 C 1.37729 * 120.06815 * 0.02562 * 26 16 15 28 28 H 1.08999 * 109.47298 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46902 * 300.00023 * 1 2 3 30 30 H 1.09003 * 109.47076 * 59.99260 * 1 2 3 31 31 H 1.09000 * 109.47131 * 120.00214 * 2 1 3 32 32 H 1.09004 * 109.46902 * 239.99976 * 2 1 3 33 33 H 1.08000 * 120.50120 * 0.02562 * 7 6 4 34 34 H 1.08994 * 109.47481 * 89.99788 * 10 9 8 35 35 H 1.09001 * 109.46750 * 209.99886 * 10 9 8 36 36 H 1.09000 * 109.46904 * 329.98663 * 10 9 8 37 37 H 1.07995 * 120.03473 * 359.97438 * 14 13 12 38 38 H 1.08006 * 119.96541 * 180.23180 * 15 14 13 39 39 H 0.96999 * 120.00292 * 179.97438 * 21 20 18 40 40 H 1.08005 * 119.97004 * 180.02562 * 26 16 15 41 41 H 1.08005 * 120.03614 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3500 1.5454 -0.0005 5 8 4.0902 0.5819 -0.0015 6 6 3.9135 2.9078 0.0000 7 6 3.0898 4.0284 0.1502 8 7 3.6371 5.2312 0.1443 9 6 4.9394 5.3901 -0.0005 10 6 5.5064 6.7863 0.0001 11 7 5.7597 4.3710 -0.1454 12 6 5.3017 3.1208 -0.1460 13 6 6.2278 1.9782 -0.3024 14 6 7.3329 1.8527 0.5420 15 6 8.1905 0.7847 0.3973 16 6 7.9629 -0.1622 -0.5956 17 8 8.8127 -1.2094 -0.7395 18 6 8.6173 -2.0142 -1.8032 19 1 7.7638 -1.8609 -2.4470 20 6 9.5125 -3.0392 -2.0708 21 7 9.3222 -3.8242 -3.1089 22 14 10.9883 -3.3050 -0.9570 23 1 10.6225 -4.2441 0.1337 24 1 12.1083 -3.8763 -1.7473 25 1 11.4073 -2.0060 -0.3721 26 6 6.8661 -0.0370 -1.4416 27 6 6.0021 1.0260 -1.2986 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 2.0226 3.9122 0.2691 34 1 5.7624 7.0740 1.0198 35 1 6.4016 6.8151 -0.6212 36 1 4.7655 7.4795 -0.3980 37 1 7.5128 2.5902 1.3101 38 1 9.0434 0.6850 1.0526 39 1 9.9484 -4.5409 -3.2964 40 1 6.6917 -0.7741 -2.2114 41 1 5.1508 1.1229 -1.9561 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243586820.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:52 Heat of formation + Delta-G solvation = -49.274447 kcal Electronic energy + Delta-G solvation = -27067.324258 eV Core-core repulsion = 23106.094170 eV Total energy + Delta-G solvation = -3961.230088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.55535 -41.11807 -40.88390 -38.63768 -37.57818 -35.13860 -34.73752 -34.40491 -32.59580 -32.00441 -30.74893 -29.96864 -27.54770 -25.52273 -25.34477 -24.13153 -23.59390 -22.60967 -22.01151 -19.96850 -19.49573 -19.19466 -18.56246 -17.86785 -17.70669 -17.51768 -16.70826 -16.33356 -16.01189 -15.78804 -15.65562 -15.36118 -15.05121 -14.91468 -14.47809 -14.40761 -14.23814 -14.16262 -13.69835 -13.51957 -13.29475 -13.20908 -12.98767 -12.86483 -12.85373 -12.65659 -12.56179 -12.49306 -12.03390 -11.89896 -11.55431 -11.49904 -11.36024 -10.93758 -10.68323 -10.47073 -9.83504 -9.04721 -8.54167 -6.27056 -0.93664 -0.28856 0.52666 0.58307 1.31074 1.34735 1.36461 1.44071 1.51376 2.26008 2.50368 2.60411 2.74596 2.85295 2.95406 3.06227 3.30512 3.49830 3.69406 3.91792 4.01026 4.02389 4.05843 4.08724 4.35276 4.36914 4.42033 4.59775 4.72619 4.78333 4.78537 4.84635 4.89754 4.94210 5.08797 5.11517 5.23034 5.31870 5.36436 5.42447 5.52162 5.68852 5.74665 5.78271 6.09150 6.60180 6.78825 6.85599 7.49051 8.56983 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.012103 B = 0.003543 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.920611 B = 7900.982141 C = 9783.446025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.055 3.945 3 O -0.349 6.349 4 C 0.513 3.487 5 O -0.504 6.504 6 C -0.254 4.254 7 C 0.228 3.772 8 N -0.537 5.537 9 C 0.343 3.657 10 C -0.087 4.087 11 N -0.534 5.534 12 C 0.299 3.701 13 C -0.148 4.148 14 C -0.022 4.022 15 C -0.198 4.198 16 C 0.149 3.851 17 O -0.233 6.233 18 C -0.404 4.404 19 H 0.081 0.919 20 C 0.014 3.986 21 N -0.918 5.918 22 Si 0.971 3.029 23 H -0.265 1.265 24 H -0.265 1.265 25 H -0.260 1.260 26 C -0.239 4.239 27 C 0.012 3.988 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.215 0.785 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.147 0.853 38 H 0.140 0.860 39 H 0.287 0.713 40 H 0.113 0.887 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.001 17.905 8.613 25.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.018 4.018 3 O -0.266 6.266 4 C 0.357 3.643 5 O -0.393 6.393 6 C -0.260 4.260 7 C 0.061 3.939 8 N -0.252 5.252 9 C 0.079 3.921 10 C -0.145 4.145 11 N -0.249 5.249 12 C 0.154 3.846 13 C -0.150 4.150 14 C -0.041 4.041 15 C -0.217 4.217 16 C 0.099 3.901 17 O -0.139 6.139 18 C -0.480 4.480 19 H 0.099 0.901 20 C -0.185 4.185 21 N -0.558 5.558 22 Si 0.792 3.208 23 H -0.190 1.190 24 H -0.190 1.190 25 H -0.184 1.184 26 C -0.258 4.258 27 C -0.008 4.008 28 H 0.114 0.886 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.231 0.769 34 H 0.128 0.872 35 H 0.113 0.887 36 H 0.125 0.875 37 H 0.165 0.835 38 H 0.158 0.842 39 H 0.096 0.904 40 H 0.130 0.870 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.165 18.293 8.605 25.272 hybrid contribution 0.119 -1.989 -0.286 2.013 sum -15.047 16.305 8.318 23.695 Atomic orbital electron populations 1.21816 0.89643 1.04386 1.04125 1.23316 0.97353 0.78688 1.02448 1.86484 1.22108 1.33917 1.84042 1.20654 0.81357 0.89017 0.73309 1.91036 1.60192 1.42931 1.45103 1.20847 0.95427 0.93751 1.15977 1.24078 1.01874 0.84900 0.83054 1.68492 1.13675 1.25536 1.17457 1.24383 0.85693 0.97293 0.84764 1.20848 1.02386 0.85663 1.05616 1.68686 1.40311 0.98299 1.17607 1.20199 0.89390 0.91081 0.83913 1.17965 0.98676 0.95966 1.02416 1.20831 0.90609 0.95571 0.97113 1.20333 1.04040 0.95640 1.01675 1.19719 0.89220 0.86994 0.94207 1.83479 1.50831 1.34806 1.44769 1.20743 1.12407 1.10868 1.03984 0.90127 1.25310 1.01146 0.94272 0.97785 1.69711 1.39189 1.18947 1.27924 0.85217 0.77701 0.79409 0.78424 1.19002 1.19005 1.18380 1.21002 0.98368 1.01944 1.04534 1.20475 0.94749 0.90910 0.94623 0.88551 0.90555 0.90893 0.91503 0.91935 0.76884 0.87250 0.88738 0.87503 0.83486 0.84192 0.90355 0.86955 0.87058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 10.29 71.98 0.74 -0.95 16 2 C 0.06 1.09 6.20 71.98 0.45 1.53 16 3 O -0.35 -7.78 9.60 -56.61 -0.54 -8.32 16 4 C 0.51 14.60 7.46 70.24 0.52 15.12 16 5 O -0.50 -18.26 11.99 19.83 0.24 -18.02 16 6 C -0.25 -6.73 5.90 -19.73 -0.12 -6.84 16 7 C 0.23 4.56 10.90 85.04 0.93 5.49 16 8 N -0.54 -11.22 10.30 -186.94 -1.93 -13.14 16 9 C 0.34 7.52 7.64 138.74 1.06 8.58 16 10 C -0.09 -1.14 10.30 71.23 0.73 -0.40 16 11 N -0.53 -14.84 10.26 -176.15 -1.81 -16.65 16 12 C 0.30 9.18 6.31 42.24 0.27 9.45 16 13 C -0.15 -5.41 4.63 -20.03 -0.09 -5.50 16 14 C -0.02 -0.80 9.75 22.49 0.22 -0.58 16 15 C -0.20 -8.01 9.98 22.35 0.22 -7.79 16 16 C 0.15 7.29 6.65 22.67 0.15 7.44 16 17 O -0.23 -12.85 8.58 -21.17 -0.18 -13.03 16 18 C -0.40 -24.15 9.94 67.93 0.68 -23.47 16 19 H 0.08 5.08 5.43 -2.91 -0.02 5.06 16 20 C 0.01 0.82 5.49 84.85 0.47 1.29 16 21 N -0.92 -54.95 13.96 21.62 0.30 -54.65 16 22 Si 0.97 45.38 28.62 68.60 1.96 47.34 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 25 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 26 C -0.24 -11.35 9.15 22.35 0.20 -11.14 16 27 C 0.01 0.48 6.71 22.49 0.15 0.63 16 28 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.21 2.70 7.73 -2.91 -0.02 2.67 16 34 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 36 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.15 4.28 8.06 -2.91 -0.02 4.26 16 38 H 0.14 5.07 8.06 -2.91 -0.02 5.04 16 39 H 0.29 15.67 8.31 -92.71 -0.77 14.90 16 40 H 0.11 5.78 5.64 -2.91 -0.02 5.76 16 41 H 0.11 4.20 7.41 -2.91 -0.02 4.17 16 Total: -1.00 -72.52 357.69 5.70 -66.83 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 1.07 Total: 16.78 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: 6.58 Total: -7.13 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -3.43 Total: -84.45 kcal Atomic # 8 Polarization: -38.89 SS G_CDS: -0.49 Total: -39.37 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.96 Total: 47.34 kcal Total: -72.52 5.70 -66.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586820.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.553 kcal (2) G-P(sol) polarization free energy of solvation -72.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds