Wall clock time and date at job start Tue Mar 31 2020 16:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45192 * 109.47429 * 2 1 4 4 C 1.34642 * 117.00539 * 180.02562 * 3 2 1 5 5 O 1.21395 * 119.99500 * 359.97438 * 4 3 2 6 6 C 1.48344 * 120.00434 * 180.02562 * 4 3 2 7 7 C 1.39282 * 120.50919 * 180.27812 * 6 4 3 8 8 C 1.40006 * 118.14161 * 180.23548 * 7 6 4 9 9 C 1.48149 * 120.53492 * 179.75592 * 8 7 6 10 10 C 1.39535 * 120.05634 * 179.72364 * 9 8 7 11 11 C 1.37777 * 119.94080 * 180.02562 * 10 9 8 12 12 C 1.39054 * 120.05943 * 0.25212 * 11 10 9 13 13 O 1.35647 * 119.94320 * 179.74761 * 12 11 10 14 14 C 1.34815 * 116.99982 * 354.45097 * 13 12 11 15 15 H 1.08000 * 119.99994 * 5.05973 * 14 13 12 16 16 C 1.38675 * 119.99956 * 185.05768 * 14 13 12 17 17 N 1.31536 * 120.00221 * 179.97438 * 16 14 13 18 18 Si 1.86809 * 120.00080 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.46965 * 90.00143 * 18 16 14 20 20 H 1.48503 * 109.46926 * 209.99861 * 18 16 14 21 21 H 1.48494 * 109.46925 * 330.00034 * 18 16 14 22 22 C 1.39048 * 120.11340 * 359.49614 * 12 11 10 23 23 C 1.37783 * 120.05633 * 0.50383 * 22 12 11 24 24 N 1.33081 * 118.92577 * 359.48767 * 8 7 6 25 25 C 1.31751 * 120.90110 * 0.26853 * 24 8 7 26 26 C 1.50701 * 118.96582 * 179.97438 * 25 24 8 27 27 N 1.31600 * 122.06603 * 359.97438 * 25 24 8 28 28 H 1.09006 * 109.47396 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47032 * 299.99755 * 1 2 3 30 30 H 1.08999 * 109.47468 * 60.00074 * 1 2 3 31 31 H 1.09000 * 109.46778 * 239.99791 * 2 1 3 32 32 H 1.09002 * 109.47212 * 120.00377 * 2 1 3 33 33 H 1.07991 * 120.93033 * 359.97438 * 7 6 4 34 34 H 1.07993 * 120.03321 * 0.04338 * 10 9 8 35 35 H 1.08000 * 119.97388 * 179.97438 * 11 10 9 36 36 H 0.97001 * 120.00426 * 179.97438 * 17 16 14 37 37 H 1.08001 * 119.96990 * 180.23284 * 22 12 11 38 38 H 1.08006 * 120.02458 * 179.77307 * 23 22 12 39 39 H 1.09004 * 109.46866 * 90.00277 * 26 25 24 40 40 H 1.08999 * 109.47260 * 210.00342 * 26 25 24 41 41 H 1.09003 * 109.47476 * 330.01151 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3488 1.5453 -0.0005 5 8 4.0883 0.5826 -0.0005 6 6 3.9159 2.9161 0.0000 7 6 5.2950 3.1108 -0.0064 8 6 5.7763 4.4255 -0.0005 9 6 7.2333 4.6937 -0.0014 10 6 7.7020 6.0080 -0.0013 11 6 9.0575 6.2546 -0.0026 12 6 9.9583 5.1952 -0.0094 13 8 11.2923 5.4408 -0.0159 14 6 11.6772 6.7277 -0.1316 15 1 10.9375 7.5146 -0.1315 16 6 13.0229 7.0409 -0.2506 17 7 13.3984 8.2964 -0.3640 18 14 14.3022 5.6796 -0.2514 19 1 14.5399 5.2246 -1.6449 20 1 15.5710 6.1925 0.3251 21 1 13.8127 4.5398 0.5649 22 6 9.4938 3.8846 -0.0042 23 6 8.1393 3.6325 -0.0029 24 7 4.9038 5.4304 0.0005 25 6 3.6066 5.2001 0.0013 26 6 2.6575 6.3708 0.0030 27 7 3.1136 3.9800 0.0007 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.9741 2.2712 -0.0114 34 1 7.0030 6.8311 0.0002 35 1 9.4209 7.2717 -0.0030 36 1 14.3397 8.5155 -0.4469 37 1 10.1955 3.0636 -0.0057 38 1 7.7791 2.6143 -0.0025 39 1 2.4279 6.6538 -1.0243 40 1 1.7378 6.0922 0.5173 41 1 3.1205 7.2132 0.5170 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243586885.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:30 Heat of formation + Delta-G solvation = -38.131777 kcal Electronic energy + Delta-G solvation = -25928.785295 eV Core-core repulsion = 21968.038390 eV Total energy + Delta-G solvation = -3960.746905 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.40353 -40.31386 -39.31757 -37.01369 -36.97579 -34.02769 -33.51854 -32.58412 -31.96423 -30.56500 -29.42924 -28.41531 -26.22362 -25.61435 -23.62672 -23.07661 -22.18672 -21.31976 -20.73526 -18.78736 -18.08409 -17.64921 -17.15995 -16.95966 -16.93236 -15.66631 -15.36894 -15.28088 -14.76358 -14.37282 -14.29620 -14.12407 -13.98360 -13.75390 -13.57813 -13.14308 -12.89813 -12.87538 -12.60616 -12.46003 -12.40055 -12.34063 -11.95991 -11.87368 -11.45732 -11.18205 -11.14559 -11.09705 -10.86640 -10.73237 -10.58058 -10.29591 -9.66796 -9.61959 -9.35939 -9.02533 -8.49778 -7.47456 -6.64248 -4.27830 0.22893 0.61864 1.93754 2.00359 2.14215 2.40066 3.10082 3.14190 3.27233 3.65006 3.68469 3.85756 4.05984 4.28859 4.37887 4.57002 4.57089 4.60915 4.66132 4.90002 4.90303 4.93721 5.14730 5.19044 5.33394 5.41436 5.42983 5.47166 5.49743 5.59247 5.65471 5.78188 5.93547 6.00718 6.09206 6.21625 6.30734 6.60178 6.72202 6.82078 7.01769 7.09676 7.35369 7.38494 7.58726 7.79427 8.00722 8.68536 9.27536 10.41546 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.023127 B = 0.002296 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.431915 B =12190.796586 C =13369.877508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.331 6.331 4 C 0.528 3.472 5 O -0.491 6.491 6 C 0.146 3.854 7 C -0.180 4.180 8 C 0.264 3.736 9 C -0.175 4.175 10 C -0.011 4.011 11 C -0.233 4.233 12 C 0.179 3.821 13 O -0.199 6.199 14 C -0.390 4.390 15 H 0.112 0.888 16 C 0.066 3.934 17 N -0.863 5.863 18 Si 0.907 3.093 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.257 1.257 22 C -0.197 4.197 23 C -0.039 4.039 24 N -0.508 5.508 25 C 0.324 3.676 26 C -0.083 4.083 27 N -0.500 5.500 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.160 0.840 34 H 0.127 0.873 35 H 0.140 0.860 36 H 0.284 0.716 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.272 -10.809 0.641 23.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.016 4.016 3 O -0.247 6.247 4 C 0.370 3.630 5 O -0.377 6.377 6 C 0.002 3.998 7 C -0.204 4.204 8 C 0.120 3.880 9 C -0.178 4.178 10 C -0.031 4.031 11 C -0.253 4.253 12 C 0.123 3.877 13 O -0.101 6.101 14 C -0.465 4.465 15 H 0.130 0.870 16 C -0.139 4.139 17 N -0.499 5.499 18 Si 0.732 3.268 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.181 1.181 22 C -0.216 4.216 23 C -0.058 4.058 24 N -0.224 5.224 25 C 0.056 3.944 26 C -0.141 4.141 27 N -0.219 5.219 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.177 0.823 34 H 0.145 0.855 35 H 0.157 0.843 36 H 0.094 0.906 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -21.336 -10.380 0.635 23.736 hybrid contribution 1.217 -1.230 -0.052 1.732 sum -20.119 -11.611 0.582 23.236 Atomic orbital electron populations 1.21797 0.92262 1.02981 1.03818 1.23149 0.95724 0.79851 1.02826 1.86671 1.22692 1.32215 1.83100 1.20721 0.81182 0.88185 0.72920 1.90859 1.60736 1.41128 1.44974 1.20150 0.90216 0.90855 0.98584 1.22806 0.95163 0.99956 1.02432 1.20267 0.93916 0.87165 0.86682 1.17813 0.87364 0.94476 1.18130 1.20945 0.94772 0.95336 0.92017 1.21260 0.92618 1.00243 1.11139 1.19342 0.83633 0.93328 0.91405 1.83531 1.18568 1.30678 1.77296 1.20902 0.94530 0.79769 1.51315 0.87040 1.24552 0.97169 0.97155 0.95065 1.69626 1.18448 1.16838 1.44963 0.86155 0.79606 0.81615 0.79465 1.19579 1.20469 1.18138 1.20103 0.94950 0.94425 1.12128 1.20713 0.91942 0.97488 0.95695 1.68270 1.03086 1.36272 1.14766 1.23196 0.89156 0.91650 0.90401 1.20572 0.96661 0.92850 1.04017 1.68193 1.39939 0.98890 1.14876 0.90109 0.91304 0.91297 0.90956 0.90955 0.82276 0.85540 0.84283 0.90573 0.85704 0.86077 0.89519 0.89571 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.29 37.16 0.38 -0.49 16 2 C 0.06 0.49 6.19 37.16 0.23 0.72 16 3 O -0.33 -3.94 10.07 -40.34 -0.41 -4.35 16 4 C 0.53 7.12 7.97 34.89 0.28 7.40 16 5 O -0.49 -7.15 16.21 -19.19 -0.31 -7.46 16 6 C 0.15 2.08 6.79 -82.71 -0.56 1.52 16 7 C -0.18 -2.58 9.07 -38.53 -0.35 -2.93 16 8 C 0.26 4.13 6.76 -82.59 -0.56 3.57 16 9 C -0.18 -2.95 5.88 -104.86 -0.62 -3.56 16 10 C -0.01 -0.20 9.58 -39.27 -0.38 -0.58 16 11 C -0.23 -4.72 9.15 -39.45 -0.36 -5.08 16 12 C 0.18 3.82 6.65 -38.98 -0.26 3.56 16 13 O -0.20 -4.87 8.58 0.41 0.00 -4.87 16 14 C -0.39 -10.28 9.94 30.89 0.31 -9.97 16 15 H 0.11 2.99 5.42 -52.49 -0.28 2.70 16 16 C 0.07 1.75 5.49 -17.52 -0.10 1.66 16 17 N -0.86 -23.51 13.96 55.48 0.77 -22.73 16 18 Si 0.91 20.34 28.62 -169.99 -4.86 15.47 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 22 C -0.20 -3.58 9.98 -39.45 -0.39 -3.97 16 23 C -0.04 -0.62 9.43 -39.27 -0.37 -0.99 16 24 N -0.51 -7.77 9.46 -7.32 -0.07 -7.83 16 25 C 0.32 4.40 7.64 -157.40 -1.20 3.20 16 26 C -0.08 -0.77 10.31 36.01 0.37 -0.40 16 27 N -0.50 -7.09 10.13 -7.40 -0.08 -7.16 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.16 2.05 6.00 -52.49 -0.31 1.73 16 34 H 0.13 2.09 7.57 -52.49 -0.40 1.69 16 35 H 0.14 2.92 5.62 -52.49 -0.30 2.63 16 36 H 0.28 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 38 H 0.12 1.58 6.27 -52.48 -0.33 1.25 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 361.86 15.07 5.45 5.45 Total: -1.00 -29.38 361.86 -7.63 -37.01 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -4.56 Total: 2.84 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -3.58 Total: -6.35 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.63 Total: -37.73 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.71 Total: -16.68 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.86 Total: 15.47 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.38 -7.63 -37.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586885.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.126 kcal (2) G-P(sol) polarization free energy of solvation -29.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds