Wall clock time and date at job start Tue Mar 31 2020 16:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45192 * 109.47429 * 2 1 4 4 C 1.34642 * 117.00539 * 180.02562 * 3 2 1 5 5 O 1.21395 * 119.99500 * 359.97438 * 4 3 2 6 6 C 1.48344 * 120.00434 * 180.02562 * 4 3 2 7 7 C 1.39282 * 120.50919 * 180.27812 * 6 4 3 8 8 C 1.40006 * 118.14161 * 180.23548 * 7 6 4 9 9 C 1.48149 * 120.53492 * 179.75592 * 8 7 6 10 10 C 1.39535 * 120.05634 * 179.72364 * 9 8 7 11 11 C 1.37777 * 119.94080 * 180.02562 * 10 9 8 12 12 C 1.39054 * 120.05943 * 0.25212 * 11 10 9 13 13 O 1.35647 * 119.94320 * 179.74761 * 12 11 10 14 14 C 1.34815 * 116.99982 * 354.45097 * 13 12 11 15 15 H 1.08000 * 119.99994 * 5.05973 * 14 13 12 16 16 C 1.38675 * 119.99956 * 185.05768 * 14 13 12 17 17 N 1.31536 * 120.00221 * 179.97438 * 16 14 13 18 18 Si 1.86809 * 120.00080 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.46965 * 90.00143 * 18 16 14 20 20 H 1.48503 * 109.46926 * 209.99861 * 18 16 14 21 21 H 1.48494 * 109.46925 * 330.00034 * 18 16 14 22 22 C 1.39048 * 120.11340 * 359.49614 * 12 11 10 23 23 C 1.37783 * 120.05633 * 0.50383 * 22 12 11 24 24 N 1.33081 * 118.92577 * 359.48767 * 8 7 6 25 25 C 1.31751 * 120.90110 * 0.26853 * 24 8 7 26 26 C 1.50701 * 118.96582 * 179.97438 * 25 24 8 27 27 N 1.31600 * 122.06603 * 359.97438 * 25 24 8 28 28 H 1.09006 * 109.47396 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47032 * 299.99755 * 1 2 3 30 30 H 1.08999 * 109.47468 * 60.00074 * 1 2 3 31 31 H 1.09000 * 109.46778 * 239.99791 * 2 1 3 32 32 H 1.09002 * 109.47212 * 120.00377 * 2 1 3 33 33 H 1.07991 * 120.93033 * 359.97438 * 7 6 4 34 34 H 1.07993 * 120.03321 * 0.04338 * 10 9 8 35 35 H 1.08000 * 119.97388 * 179.97438 * 11 10 9 36 36 H 0.97001 * 120.00426 * 179.97438 * 17 16 14 37 37 H 1.08001 * 119.96990 * 180.23284 * 22 12 11 38 38 H 1.08006 * 120.02458 * 179.77307 * 23 22 12 39 39 H 1.09004 * 109.46866 * 90.00277 * 26 25 24 40 40 H 1.08999 * 109.47260 * 210.00342 * 26 25 24 41 41 H 1.09003 * 109.47476 * 330.01151 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3488 1.5453 -0.0005 5 8 4.0883 0.5826 -0.0005 6 6 3.9159 2.9161 0.0000 7 6 5.2950 3.1108 -0.0064 8 6 5.7763 4.4255 -0.0005 9 6 7.2333 4.6937 -0.0014 10 6 7.7020 6.0080 -0.0013 11 6 9.0575 6.2546 -0.0026 12 6 9.9583 5.1952 -0.0094 13 8 11.2923 5.4408 -0.0159 14 6 11.6772 6.7277 -0.1316 15 1 10.9375 7.5146 -0.1315 16 6 13.0229 7.0409 -0.2506 17 7 13.3984 8.2964 -0.3640 18 14 14.3022 5.6796 -0.2514 19 1 14.5399 5.2246 -1.6449 20 1 15.5710 6.1925 0.3251 21 1 13.8127 4.5398 0.5649 22 6 9.4938 3.8846 -0.0042 23 6 8.1393 3.6325 -0.0029 24 7 4.9038 5.4304 0.0005 25 6 3.6066 5.2001 0.0013 26 6 2.6575 6.3708 0.0030 27 7 3.1136 3.9800 0.0007 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.9741 2.2712 -0.0114 34 1 7.0030 6.8311 0.0002 35 1 9.4209 7.2717 -0.0030 36 1 14.3397 8.5155 -0.4469 37 1 10.1955 3.0636 -0.0057 38 1 7.7791 2.6143 -0.0025 39 1 2.4279 6.6538 -1.0243 40 1 1.7378 6.0922 0.5173 41 1 3.1205 7.2132 0.5170 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243586885.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:29 Heat of formation + Delta-G solvation = -53.834190 kcal Electronic energy + Delta-G solvation = -25929.466203 eV Core-core repulsion = 21968.038390 eV Total energy + Delta-G solvation = -3961.427813 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.52992 -41.36315 -40.88753 -38.55904 -37.92526 -35.26338 -34.70116 -34.37292 -32.58975 -32.03872 -30.80646 -29.43601 -27.61848 -27.09110 -24.80146 -24.08912 -23.43224 -22.50047 -22.04111 -20.04605 -19.64720 -19.21994 -18.46310 -17.97481 -17.83154 -16.91854 -16.69405 -16.40752 -16.24842 -15.86687 -15.77159 -15.30248 -15.15615 -15.06290 -14.57255 -14.42639 -14.15932 -14.11471 -13.82863 -13.65007 -13.26828 -13.24697 -13.00187 -12.91926 -12.74226 -12.64649 -12.55222 -12.17673 -12.12277 -11.92299 -11.89506 -11.59000 -11.34949 -10.99697 -10.70140 -10.55216 -9.96462 -9.04808 -8.54524 -6.26956 -0.92649 -0.57849 0.49672 0.63703 1.21103 1.21693 1.33436 1.37368 1.52743 2.25843 2.46377 2.64089 2.70567 2.80199 2.94191 3.10551 3.23671 3.55484 3.74737 3.95575 3.99544 4.02048 4.03137 4.15641 4.29778 4.32753 4.42116 4.61637 4.71851 4.73717 4.75520 4.84039 4.88213 4.92194 5.02143 5.14299 5.20033 5.30300 5.31069 5.42171 5.51096 5.67440 5.74009 5.78790 6.06655 6.38005 6.78169 6.86377 7.46663 8.55807 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.023127 B = 0.002296 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.431915 B =12190.796586 C =13369.877508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 O -0.337 6.337 4 C 0.532 3.468 5 O -0.504 6.504 6 C 0.140 3.860 7 C -0.174 4.174 8 C 0.249 3.751 9 C -0.155 4.155 10 C -0.015 4.015 11 C -0.243 4.243 12 C 0.150 3.850 13 O -0.228 6.228 14 C -0.403 4.403 15 H 0.087 0.913 16 C 0.014 3.986 17 N -0.914 5.914 18 Si 0.970 3.030 19 H -0.265 1.265 20 H -0.268 1.268 21 H -0.259 1.259 22 C -0.191 4.191 23 C -0.029 4.029 24 N -0.518 5.518 25 C 0.317 3.683 26 C -0.081 4.081 27 N -0.498 5.498 28 H 0.105 0.895 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.177 0.823 34 H 0.138 0.862 35 H 0.119 0.881 36 H 0.287 0.713 37 H 0.145 0.855 38 H 0.163 0.837 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.383 -13.711 0.685 27.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 O -0.252 6.252 4 C 0.374 3.626 5 O -0.391 6.391 6 C -0.004 4.004 7 C -0.197 4.197 8 C 0.104 3.896 9 C -0.157 4.157 10 C -0.034 4.034 11 C -0.262 4.262 12 C 0.098 3.902 13 O -0.133 6.133 14 C -0.479 4.479 15 H 0.104 0.896 16 C -0.186 4.186 17 N -0.553 5.553 18 Si 0.791 3.209 19 H -0.190 1.190 20 H -0.193 1.193 21 H -0.183 1.183 22 C -0.210 4.210 23 C -0.048 4.048 24 N -0.234 5.234 25 C 0.050 3.950 26 C -0.139 4.139 27 N -0.216 5.216 28 H 0.123 0.877 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.194 0.806 34 H 0.156 0.844 35 H 0.137 0.863 36 H 0.097 0.903 37 H 0.163 0.837 38 H 0.180 0.820 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -24.525 -13.297 0.682 27.906 hybrid contribution 1.493 -0.522 -0.054 1.582 sum -23.032 -13.819 0.628 26.867 Atomic orbital electron populations 1.21832 0.90186 1.04564 1.03733 1.23512 0.97330 0.78221 1.03321 1.86664 1.21624 1.34445 1.82513 1.20563 0.81739 0.87606 0.72725 1.90852 1.61159 1.41364 1.45767 1.20400 0.90414 0.91471 0.98148 1.22905 0.95614 0.99651 1.01522 1.20160 0.93245 0.88106 0.88095 1.18096 0.88636 0.94114 1.14866 1.21042 0.93753 0.96633 0.92005 1.21242 0.93777 0.99393 1.11823 1.19878 0.83070 0.95004 0.92272 1.83497 1.19948 1.29069 1.80807 1.20771 0.94481 0.80418 1.52261 0.89550 1.25316 0.98952 0.99272 0.95032 1.69709 1.18942 1.18483 1.48127 0.85230 0.77373 0.78711 0.79542 1.18988 1.19317 1.18280 1.20439 0.96339 0.93475 1.10716 1.21119 0.90726 0.99251 0.93672 1.68291 1.03960 1.36536 1.14639 1.23975 0.89077 0.92595 0.89336 1.20751 0.96347 0.91470 1.05369 1.68296 1.40043 0.99134 1.14148 0.87678 0.91365 0.91370 0.90492 0.90479 0.80601 0.84405 0.86334 0.90322 0.83700 0.81985 0.87917 0.87972 0.88540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.29 71.98 0.74 -0.53 16 2 C 0.05 0.70 6.19 71.98 0.45 1.14 16 3 O -0.34 -7.16 10.07 -55.50 -0.56 -7.72 16 4 C 0.53 12.92 7.97 70.51 0.56 13.48 16 5 O -0.50 -13.31 16.21 20.18 0.33 -12.99 16 6 C 0.14 3.60 6.79 41.87 0.28 3.88 16 7 C -0.17 -4.41 9.07 22.95 0.21 -4.21 16 8 C 0.25 7.12 6.76 42.02 0.28 7.40 16 9 C -0.16 -4.87 5.88 -20.02 -0.12 -4.99 16 10 C -0.02 -0.53 9.58 22.47 0.22 -0.32 16 11 C -0.24 -10.21 9.15 22.36 0.20 -10.00 16 12 C 0.15 6.53 6.65 22.66 0.15 6.68 16 13 O -0.23 -11.62 8.58 -21.45 -0.18 -11.80 16 14 C -0.40 -22.62 9.94 67.92 0.68 -21.94 16 15 H 0.09 5.07 5.42 -2.91 -0.02 5.06 16 16 C 0.01 0.79 5.49 84.84 0.47 1.26 16 17 N -0.91 -52.56 13.96 21.62 0.30 -52.26 16 18 Si 0.97 43.25 28.62 68.60 1.96 45.21 16 19 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 20 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 21 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 22 C -0.19 -6.63 9.98 22.36 0.22 -6.40 16 23 C -0.03 -0.83 9.43 22.47 0.21 -0.62 16 24 N -0.52 -14.59 9.46 -177.07 -1.68 -16.26 16 25 C 0.32 7.74 7.64 138.82 1.06 8.80 16 26 C -0.08 -1.27 10.31 71.24 0.73 -0.53 16 27 N -0.50 -12.67 10.13 -177.34 -1.80 -14.47 16 28 H 0.10 0.43 8.14 -2.38 -0.02 0.41 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.18 3.78 6.00 -2.91 -0.02 3.76 16 34 H 0.14 4.49 7.57 -2.91 -0.02 4.46 16 35 H 0.12 5.44 5.62 -2.91 -0.02 5.42 16 36 H 0.29 15.13 8.31 -92.71 -0.77 14.36 16 37 H 0.15 4.45 8.06 -2.91 -0.02 4.42 16 38 H 0.16 3.41 6.27 -2.91 -0.02 3.40 16 39 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -66.52 361.86 5.81 -60.72 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 1.08 Total: 16.47 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 6.35 Total: -6.89 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -3.17 Total: -82.99 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -0.42 Total: -32.51 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.96 Total: 45.21 kcal Total: -66.52 5.81 -60.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586885.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.882 kcal (2) G-P(sol) polarization free energy of solvation -66.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds