Wall clock time and date at job start Tue Mar 31 2020 16:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45199 * 109.47312 * 2 1 4 4 C 1.34237 * 116.99766 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00002 * 0.02562 * 4 3 2 6 6 C 1.50691 * 119.99744 * 179.97438 * 4 3 2 7 7 C 1.50700 * 109.47233 * 179.97438 * 6 4 3 8 8 C 1.38699 * 120.71296 * 89.99631 * 7 6 4 9 9 N 1.32188 * 119.20576 * 179.75046 * 8 7 6 10 10 C 1.32646 * 120.73363 * 0.25696 * 9 8 7 11 11 C 1.48190 * 119.22917 * 179.97438 * 10 9 8 12 12 C 1.39505 * 120.05080 * 359.73120 * 11 10 9 13 13 C 1.37796 * 119.93994 * 179.69639 * 12 11 10 14 14 C 1.39035 * 120.05450 * 0.59499 * 13 12 11 15 15 O 1.35662 * 119.94198 * 179.69979 * 14 13 12 16 16 C 1.34813 * 116.99760 * 174.42758 * 15 14 13 17 17 H 1.08000 * 120.00346 * 5.05795 * 16 15 14 18 18 C 1.38674 * 119.99697 * 185.05591 * 16 15 14 19 19 N 1.31546 * 120.00130 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99739 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46926 * 90.00303 * 20 18 16 22 22 H 1.48499 * 109.46910 * 209.99924 * 20 18 16 23 23 H 1.48496 * 109.47319 * 330.00117 * 20 18 16 24 24 C 1.39030 * 120.11158 * 359.67842 * 14 13 12 25 25 C 1.37789 * 120.05776 * 0.02562 * 24 14 13 26 26 N 1.32655 * 121.54809 * 359.97438 * 10 9 8 27 27 C 1.32183 * 120.73571 * 0.02562 * 26 10 9 28 28 H 1.09005 * 109.46716 * 300.00037 * 1 2 3 29 29 H 1.09006 * 109.46686 * 59.99696 * 1 2 3 30 30 H 1.08997 * 109.47089 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47092 * 239.99715 * 2 1 3 32 32 H 1.09006 * 109.46686 * 120.00304 * 2 1 3 33 33 H 1.09003 * 109.47526 * 60.00334 * 6 4 3 34 34 H 1.08999 * 109.47679 * 299.99751 * 6 4 3 35 35 H 1.08000 * 120.39432 * 0.03472 * 8 7 6 36 36 H 1.07995 * 120.03249 * 359.97438 * 12 11 10 37 37 H 1.08006 * 119.96992 * 180.29407 * 13 12 11 38 38 H 0.96993 * 119.99928 * 180.02562 * 19 18 16 39 39 H 1.08003 * 119.96855 * 180.02562 * 24 14 13 40 40 H 1.08003 * 120.02811 * 180.02562 * 25 24 14 41 41 H 1.07998 * 120.39797 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3449 1.5447 0.0005 5 8 4.0808 0.5864 0.0005 6 6 3.9209 2.9372 0.0000 7 6 5.4258 2.8583 0.0014 8 6 6.1343 2.8202 -1.1904 9 7 7.4541 2.7561 -1.1544 10 6 8.0999 2.7231 0.0038 11 6 9.5800 2.6506 0.0052 12 6 10.2787 2.6123 -1.2016 13 6 11.6553 2.5513 -1.1976 14 6 12.3473 2.5154 0.0078 15 8 13.7023 2.4492 0.0090 16 6 14.3180 2.5339 1.2053 17 1 13.7332 2.5667 2.1126 18 6 15.7025 2.5788 1.2708 19 7 16.4149 2.5394 0.1656 20 14 16.5558 2.6954 2.9285 21 1 16.8237 1.3290 3.4444 22 1 17.8390 3.4267 2.7742 23 1 15.6830 3.4233 3.8843 24 6 11.6529 2.5478 1.2118 25 6 10.2767 2.6149 1.2132 26 7 7.4518 2.7533 1.1609 27 6 6.1320 2.8173 1.1945 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.5846 3.4699 0.8895 34 1 3.5855 3.4689 -0.8905 35 1 5.6140 2.8473 -2.1364 36 1 9.7415 2.6349 -2.1382 37 1 12.1970 2.5263 -2.1317 38 1 17.3832 2.5704 0.2115 39 1 12.1928 2.5202 2.1468 40 1 9.7377 2.6405 2.1489 41 1 5.6099 2.8421 2.1396 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243587382.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:47 Heat of formation + Delta-G solvation = -43.071577 kcal Electronic energy + Delta-G solvation = -25525.195309 eV Core-core repulsion = 21564.234197 eV Total energy + Delta-G solvation = -3960.961111 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.19594 -40.46630 -38.99229 -37.09767 -36.52694 -33.99555 -33.60940 -32.45565 -32.13058 -30.26213 -30.00963 -27.51624 -25.56046 -24.61953 -24.11766 -23.03299 -21.73711 -21.37588 -20.76204 -18.17290 -18.09447 -17.62783 -17.49955 -16.86559 -16.70942 -16.48934 -14.87702 -14.71202 -14.63568 -14.62237 -14.40399 -14.23672 -13.75272 -13.60158 -13.58792 -13.45091 -13.21086 -12.88497 -12.76261 -12.47615 -12.21531 -12.03161 -11.78228 -11.48713 -11.27967 -11.03629 -10.93787 -10.84875 -10.76287 -10.72804 -10.67495 -10.50081 -9.51888 -9.44546 -9.00707 -8.86009 -8.24370 -7.19325 -6.59042 -4.14134 0.64861 1.24975 1.87989 2.16785 2.25917 2.47696 3.07942 3.08790 3.13868 3.87238 3.93037 4.05756 4.27708 4.28799 4.47242 4.47973 4.54420 4.57298 4.58529 4.64354 4.83324 5.00093 5.04053 5.16652 5.24839 5.30872 5.33273 5.47833 5.52634 5.67191 5.77740 5.84808 6.07916 6.18262 6.37581 6.42146 6.61298 6.86202 6.93787 7.08107 7.26028 7.31057 7.34582 7.42532 7.72157 7.86918 8.30933 8.85853 9.53190 10.57662 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.032987 B = 0.001877 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.619979 B =14917.503474 C =15236.704648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.361 6.361 4 C 0.458 3.542 5 O -0.497 6.497 6 C -0.052 4.052 7 C -0.232 4.232 8 C 0.176 3.824 9 N -0.524 5.524 10 C 0.400 3.600 11 C -0.167 4.167 12 C -0.019 4.019 13 C -0.204 4.204 14 C 0.173 3.827 15 O -0.163 6.163 16 C -0.392 4.392 17 H 0.098 0.902 18 C 0.041 3.959 19 N -0.853 5.853 20 Si 0.945 3.055 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.265 1.265 24 C -0.247 4.247 25 C -0.013 4.013 26 N -0.524 5.524 27 C 0.176 3.824 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.161 0.839 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.273 0.727 39 H 0.132 0.868 40 H 0.123 0.877 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.225 0.279 0.429 28.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.278 6.278 4 C 0.300 3.700 5 O -0.383 6.383 6 C -0.091 4.091 7 C -0.237 4.237 8 C 0.008 3.992 9 N -0.238 5.238 10 C 0.141 3.859 11 C -0.170 4.170 12 C -0.039 4.039 13 C -0.224 4.224 14 C 0.116 3.884 15 O -0.064 6.064 16 C -0.467 4.467 17 H 0.115 0.885 18 C -0.165 4.165 19 N -0.486 5.486 20 Si 0.769 3.231 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.190 1.190 24 C -0.267 4.267 25 C -0.033 4.033 26 N -0.238 5.238 27 C 0.008 3.992 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.178 0.822 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.083 0.917 39 H 0.150 0.850 40 H 0.141 0.859 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -26.547 -0.120 0.177 26.548 hybrid contribution -0.660 -0.165 0.854 1.092 sum -27.207 -0.284 1.032 27.228 Atomic orbital electron populations 1.21812 0.92520 1.03070 1.03538 1.23042 0.95375 0.80092 1.02770 1.86494 1.24528 1.32569 1.84235 1.23773 0.80510 0.92851 0.72845 1.90737 1.60357 1.43044 1.44162 1.20003 0.90952 0.91204 1.06955 1.20823 0.95359 1.10863 0.96650 1.22960 0.89842 0.88903 0.97467 1.68456 1.09133 1.16009 1.30164 1.21519 0.94858 0.86613 0.82897 1.17532 0.86198 1.18835 0.94451 1.20763 0.92624 0.93569 0.96907 1.20158 0.93191 1.12713 0.96324 1.19599 0.84690 0.90647 0.93488 1.83938 1.13396 1.75631 1.33406 1.21479 0.89888 1.52258 0.83109 0.88516 1.25384 0.95385 0.96103 0.99618 1.70032 1.06993 1.44289 1.27277 0.85651 0.78846 0.78886 0.79760 1.19685 1.20103 1.18952 1.21097 0.93935 1.13116 0.98516 1.20872 0.93161 0.92538 0.96762 1.68460 1.09069 1.15985 1.30263 1.22960 0.89861 0.88890 0.97457 0.91434 0.91426 0.90188 0.91166 0.91170 0.86495 0.86479 0.82200 0.85528 0.85908 0.91679 0.84995 0.85939 0.82222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 10.29 37.16 0.38 -0.27 16 2 C 0.06 0.42 6.19 37.16 0.23 0.65 16 3 O -0.36 -2.97 10.22 -39.27 -0.40 -3.37 16 4 C 0.46 4.34 7.95 36.00 0.29 4.63 16 5 O -0.50 -6.73 15.78 -18.75 -0.30 -7.03 16 6 C -0.05 -0.35 5.98 -29.04 -0.17 -0.53 16 7 C -0.23 -2.52 4.41 -104.28 -0.46 -2.98 16 8 C 0.18 2.20 11.00 -17.23 -0.19 2.01 16 9 N -0.52 -8.55 9.45 -11.15 -0.11 -8.65 16 10 C 0.40 7.18 7.55 -156.90 -1.18 5.99 16 11 C -0.17 -3.27 5.88 -104.87 -0.62 -3.88 16 12 C -0.02 -0.36 9.55 -39.27 -0.38 -0.74 16 13 C -0.20 -4.37 9.98 -39.45 -0.39 -4.76 16 14 C 0.17 4.14 6.65 -38.99 -0.26 3.88 16 15 O -0.16 -4.55 9.75 0.37 0.00 -4.54 16 16 C -0.39 -10.65 9.48 30.89 0.29 -10.36 16 17 H 0.10 2.42 5.19 -52.49 -0.27 2.15 16 18 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 19 N -0.85 -24.29 13.67 55.48 0.76 -23.53 16 20 Si 0.94 19.94 29.55 -169.99 -5.02 14.92 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 24 C -0.25 -5.41 9.15 -39.45 -0.36 -5.77 16 25 C -0.01 -0.27 9.55 -39.28 -0.38 -0.64 16 26 N -0.52 -8.63 9.45 -11.15 -0.11 -8.73 16 27 C 0.18 2.21 11.00 -17.23 -0.19 2.02 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 32 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 33 H 0.12 0.49 8.10 -51.93 -0.42 0.07 16 34 H 0.12 0.49 8.10 -51.93 -0.42 0.07 16 35 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.13 2.22 7.50 -52.49 -0.39 1.82 16 37 H 0.12 2.48 8.06 -52.48 -0.42 2.06 16 38 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.13 2.83 5.62 -52.48 -0.30 2.54 16 40 H 0.12 2.22 7.50 -52.48 -0.39 1.83 16 41 H 0.16 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 364.52 15.07 5.49 5.49 Total: -1.00 -33.80 364.52 -7.87 -41.68 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -4.71 Total: 3.52 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -3.48 Total: -9.74 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.55 Total: -40.92 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.69 Total: -14.94 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.80 -7.87 -41.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587382.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.395 kcal (2) G-P(sol) polarization free energy of solvation -33.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds