Wall clock time and date at job start Tue Mar 31 2020 16:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45199 * 109.47312 * 2 1 4 4 C 1.34237 * 116.99766 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00002 * 0.02562 * 4 3 2 6 6 C 1.50691 * 119.99744 * 179.97438 * 4 3 2 7 7 C 1.50700 * 109.47233 * 179.97438 * 6 4 3 8 8 C 1.38699 * 120.71296 * 89.99631 * 7 6 4 9 9 N 1.32188 * 119.20576 * 179.75046 * 8 7 6 10 10 C 1.32646 * 120.73363 * 0.25696 * 9 8 7 11 11 C 1.48190 * 119.22917 * 179.97438 * 10 9 8 12 12 C 1.39505 * 120.05080 * 359.73120 * 11 10 9 13 13 C 1.37796 * 119.93994 * 179.69639 * 12 11 10 14 14 C 1.39035 * 120.05450 * 0.59499 * 13 12 11 15 15 O 1.35662 * 119.94198 * 179.69979 * 14 13 12 16 16 C 1.34813 * 116.99760 * 174.42758 * 15 14 13 17 17 H 1.08000 * 120.00346 * 5.05795 * 16 15 14 18 18 C 1.38674 * 119.99697 * 185.05591 * 16 15 14 19 19 N 1.31546 * 120.00130 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99739 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46926 * 90.00303 * 20 18 16 22 22 H 1.48499 * 109.46910 * 209.99924 * 20 18 16 23 23 H 1.48496 * 109.47319 * 330.00117 * 20 18 16 24 24 C 1.39030 * 120.11158 * 359.67842 * 14 13 12 25 25 C 1.37789 * 120.05776 * 0.02562 * 24 14 13 26 26 N 1.32655 * 121.54809 * 359.97438 * 10 9 8 27 27 C 1.32183 * 120.73571 * 0.02562 * 26 10 9 28 28 H 1.09005 * 109.46716 * 300.00037 * 1 2 3 29 29 H 1.09006 * 109.46686 * 59.99696 * 1 2 3 30 30 H 1.08997 * 109.47089 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47092 * 239.99715 * 2 1 3 32 32 H 1.09006 * 109.46686 * 120.00304 * 2 1 3 33 33 H 1.09003 * 109.47526 * 60.00334 * 6 4 3 34 34 H 1.08999 * 109.47679 * 299.99751 * 6 4 3 35 35 H 1.08000 * 120.39432 * 0.03472 * 8 7 6 36 36 H 1.07995 * 120.03249 * 359.97438 * 12 11 10 37 37 H 1.08006 * 119.96992 * 180.29407 * 13 12 11 38 38 H 0.96993 * 119.99928 * 180.02562 * 19 18 16 39 39 H 1.08003 * 119.96855 * 180.02562 * 24 14 13 40 40 H 1.08003 * 120.02811 * 180.02562 * 25 24 14 41 41 H 1.07998 * 120.39797 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3449 1.5447 0.0005 5 8 4.0808 0.5864 0.0005 6 6 3.9209 2.9372 0.0000 7 6 5.4258 2.8583 0.0014 8 6 6.1343 2.8202 -1.1904 9 7 7.4541 2.7561 -1.1544 10 6 8.0999 2.7231 0.0038 11 6 9.5800 2.6506 0.0052 12 6 10.2787 2.6123 -1.2016 13 6 11.6553 2.5513 -1.1976 14 6 12.3473 2.5154 0.0078 15 8 13.7023 2.4492 0.0090 16 6 14.3180 2.5339 1.2053 17 1 13.7332 2.5667 2.1126 18 6 15.7025 2.5788 1.2708 19 7 16.4149 2.5394 0.1656 20 14 16.5558 2.6954 2.9285 21 1 16.8237 1.3290 3.4444 22 1 17.8390 3.4267 2.7742 23 1 15.6830 3.4233 3.8843 24 6 11.6529 2.5478 1.2118 25 6 10.2767 2.6149 1.2132 26 7 7.4518 2.7533 1.1609 27 6 6.1320 2.8173 1.1945 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.5846 3.4699 0.8895 34 1 3.5855 3.4689 -0.8905 35 1 5.6140 2.8473 -2.1364 36 1 9.7415 2.6349 -2.1382 37 1 12.1970 2.5263 -2.1317 38 1 17.3832 2.5704 0.2115 39 1 12.1928 2.5202 2.1468 40 1 9.7377 2.6405 2.1489 41 1 5.6099 2.8421 2.1396 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243587382.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:45 Heat of formation + Delta-G solvation = -63.399185 kcal Electronic energy + Delta-G solvation = -25526.076780 eV Core-core repulsion = 21564.234197 eV Total energy + Delta-G solvation = -3961.842582 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.21209 -41.35189 -40.72067 -38.32380 -37.74052 -35.03043 -34.75813 -34.30142 -32.67780 -31.91765 -31.33273 -28.70440 -27.39568 -25.73555 -25.10543 -23.82882 -23.38765 -22.54998 -21.80809 -19.95046 -19.16704 -18.79544 -18.64461 -18.13020 -17.57581 -17.37282 -16.36598 -16.16037 -15.94003 -15.81470 -15.54526 -15.40178 -15.27665 -15.10304 -14.53105 -14.51347 -14.28699 -14.09202 -13.60621 -13.58288 -13.32519 -13.12721 -12.83542 -12.81110 -12.62987 -12.49357 -12.43949 -12.12257 -11.90161 -11.88870 -11.64669 -11.52607 -11.26504 -10.95471 -10.46212 -10.16910 -9.90075 -8.88398 -8.51763 -6.18817 -0.55025 0.20749 0.56228 0.75282 1.17422 1.36400 1.45295 1.54027 1.73445 2.15942 2.61418 2.84031 2.95610 3.21580 3.23457 3.40146 3.52109 3.66313 3.85278 3.87700 4.01300 4.09053 4.09457 4.14232 4.21998 4.36557 4.51485 4.54870 4.63501 4.69671 4.86175 4.86853 4.92419 4.94377 5.10358 5.16766 5.21113 5.30375 5.48235 5.53907 5.60624 5.64305 5.96935 5.98428 6.11177 6.72383 6.92124 7.12072 7.67359 8.70228 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.032987 B = 0.001877 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.619979 B =14917.503474 C =15236.704648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.054 3.946 3 O -0.356 6.356 4 C 0.463 3.537 5 O -0.546 6.546 6 C -0.048 4.048 7 C -0.200 4.200 8 C 0.161 3.839 9 N -0.539 5.539 10 C 0.369 3.631 11 C -0.150 4.150 12 C -0.016 4.016 13 C -0.208 4.208 14 C 0.140 3.860 15 O -0.216 6.216 16 C -0.418 4.418 17 H 0.107 0.893 18 C -0.018 4.018 19 N -0.913 5.913 20 Si 1.020 2.980 21 H -0.263 1.263 22 H -0.270 1.270 23 H -0.252 1.252 24 C -0.248 4.248 25 C -0.016 4.016 26 N -0.541 5.541 27 C 0.160 3.840 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.198 0.802 36 H 0.149 0.851 37 H 0.126 0.874 38 H 0.275 0.725 39 H 0.131 0.869 40 H 0.141 0.859 41 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.209 1.086 1.363 33.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.020 4.020 3 O -0.273 6.273 4 C 0.308 3.692 5 O -0.435 6.435 6 C -0.086 4.086 7 C -0.205 4.205 8 C -0.005 4.005 9 N -0.253 5.253 10 C 0.107 3.893 11 C -0.153 4.153 12 C -0.035 4.035 13 C -0.227 4.227 14 C 0.087 3.913 15 O -0.121 6.121 16 C -0.494 4.494 17 H 0.124 0.876 18 C -0.216 4.216 19 N -0.550 5.550 20 Si 0.839 3.161 21 H -0.188 1.188 22 H -0.195 1.195 23 H -0.175 1.175 24 C -0.267 4.267 25 C -0.035 4.035 26 N -0.255 5.255 27 C -0.006 4.006 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.172 0.828 34 H 0.173 0.827 35 H 0.215 0.785 36 H 0.166 0.834 37 H 0.144 0.856 38 H 0.084 0.916 39 H 0.148 0.852 40 H 0.159 0.841 41 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -31.656 0.702 1.108 31.683 hybrid contribution 0.113 -0.418 0.450 0.625 sum -31.543 0.284 1.558 31.583 Atomic orbital electron populations 1.21819 0.90370 1.04195 1.03943 1.23232 0.97060 0.79463 1.02230 1.86500 1.23839 1.33255 1.83676 1.24199 0.80551 0.93183 0.71306 1.90744 1.61340 1.44785 1.46669 1.20217 0.87493 0.90185 1.10678 1.21259 0.97772 1.06049 0.95373 1.23690 0.88731 0.88268 0.99842 1.68377 1.11268 1.16070 1.29619 1.21156 0.94050 0.89821 0.84240 1.17900 0.88102 1.15188 0.94125 1.20958 0.91675 0.92839 0.98052 1.20368 0.94128 1.12366 0.95856 1.20059 0.84156 0.91899 0.95142 1.83924 1.14985 1.79222 1.33934 1.21932 0.90682 1.53223 0.83550 0.87606 1.26634 0.95753 0.95404 1.03858 1.70170 1.07265 1.47571 1.29948 0.84567 0.77598 0.79294 0.74657 1.18767 1.19464 1.17539 1.21181 0.94851 1.12866 0.97848 1.21023 0.92226 0.92363 0.97937 1.68379 1.11222 1.16105 1.29822 1.23676 0.88751 0.88325 0.99832 0.91001 0.90979 0.88771 0.91769 0.91795 0.82778 0.82712 0.78541 0.83353 0.85555 0.91567 0.85152 0.84080 0.78665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.29 71.98 0.74 -0.10 16 2 C 0.05 0.62 6.19 71.98 0.45 1.07 16 3 O -0.36 -4.58 10.22 -51.48 -0.53 -5.10 16 4 C 0.46 6.94 7.95 71.23 0.57 7.51 16 5 O -0.55 -13.39 15.78 21.95 0.35 -13.05 16 6 C -0.05 -0.36 5.98 29.10 0.17 -0.19 16 7 C -0.20 -3.43 4.41 -19.64 -0.09 -3.52 16 8 C 0.16 3.38 11.00 84.75 0.93 4.31 16 9 N -0.54 -16.26 9.45 -189.20 -1.79 -18.05 16 10 C 0.37 12.60 7.55 137.46 1.04 13.64 16 11 C -0.15 -5.80 5.88 -20.02 -0.12 -5.92 16 12 C -0.02 -0.61 9.55 22.47 0.21 -0.39 16 13 C -0.21 -9.23 9.98 22.36 0.22 -9.00 16 14 C 0.14 7.12 6.65 22.65 0.15 7.27 16 15 O -0.22 -12.94 9.75 -21.60 -0.21 -13.15 16 16 C -0.42 -24.13 9.48 67.92 0.64 -23.48 16 17 H 0.11 5.59 5.19 -2.91 -0.02 5.57 16 18 C -0.02 -0.99 5.49 84.84 0.47 -0.52 16 19 N -0.91 -55.25 13.67 21.62 0.30 -54.96 16 20 Si 1.02 42.31 29.55 68.60 2.03 44.34 16 21 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 22 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 23 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 24 C -0.25 -11.26 9.15 22.35 0.20 -11.06 16 25 C -0.02 -0.63 9.55 22.47 0.21 -0.41 16 26 N -0.54 -16.52 9.45 -189.20 -1.79 -18.31 16 27 C 0.16 3.41 11.00 84.75 0.93 4.34 16 28 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 29 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 30 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 32 H 0.06 0.82 8.13 -2.38 -0.02 0.80 16 33 H 0.15 0.21 8.10 -2.39 -0.02 0.19 16 34 H 0.16 0.19 8.10 -2.39 -0.02 0.17 16 35 H 0.20 2.53 8.06 -2.91 -0.02 2.51 16 36 H 0.15 5.05 7.50 -2.91 -0.02 5.03 16 37 H 0.13 5.38 8.06 -2.91 -0.02 5.36 16 38 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 39 H 0.13 5.84 5.62 -2.91 -0.02 5.83 16 40 H 0.14 5.01 7.50 -2.91 -0.02 4.99 16 41 H 0.20 2.60 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -80.43 364.52 6.17 -74.26 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 1.07 Total: 20.49 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: 6.74 Total: -16.47 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -3.28 Total: -91.32 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -0.39 Total: -31.30 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -80.43 6.17 -74.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587382.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.861 kcal (2) G-P(sol) polarization free energy of solvation -80.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds