Wall clock time and date at job start Tue Mar 31 2020 16:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45196 * 109.47411 * 2 1 4 4 C 1.34731 * 116.99800 * 179.97438 * 3 2 1 5 5 O 1.21475 * 120.00262 * 359.97438 * 4 3 2 6 6 C 1.47700 * 119.99420 * 179.97438 * 4 3 2 7 7 C 1.39864 * 119.96549 * 0.02562 * 6 4 3 8 8 C 1.36511 * 120.27399 * 179.76049 * 7 6 4 9 9 C 1.39827 * 120.19336 * 0.47289 * 8 7 6 10 10 C 1.47570 * 120.04187 * 179.78388 * 9 8 7 11 11 N 1.32945 * 120.26015 * 128.25801 * 10 9 8 12 12 C 1.31938 * 120.07985 * 180.27474 * 11 10 9 13 13 C 1.39264 * 120.59737 * 359.70239 * 12 11 10 14 14 N 1.31573 * 120.52171 * 0.02562 * 13 12 11 15 15 C 1.33994 * 119.90201 * 359.97438 * 14 13 12 16 16 C 1.40731 * 120.29501 * 180.02562 * 15 14 13 17 17 H 1.07991 * 120.00022 * 171.45689 * 16 15 14 18 18 C 1.40210 * 119.99520 * 351.45810 * 16 15 14 19 19 N 1.30657 * 120.00666 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99830 * 180.27420 * 18 16 15 21 21 H 1.48504 * 109.47199 * 269.72485 * 20 18 16 22 22 H 1.48498 * 109.47172 * 29.72373 * 20 18 16 23 23 H 1.48497 * 109.47456 * 149.72354 * 20 18 16 24 24 C 1.40320 * 119.91117 * 359.50665 * 9 8 7 25 25 O 1.35756 * 120.13412 * 180.23258 * 24 9 8 26 26 C 1.42900 * 117.00341 * 180.02562 * 25 24 9 27 27 C 1.38356 * 119.73158 * 0.25550 * 24 9 8 28 28 H 1.09002 * 109.46942 * 300.00303 * 1 2 3 29 29 H 1.09006 * 109.46895 * 59.99916 * 1 2 3 30 30 H 1.09002 * 109.47387 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46942 * 239.99697 * 2 1 3 32 32 H 1.08997 * 109.46998 * 120.00311 * 2 1 3 33 33 H 1.08003 * 119.85760 * 0.02562 * 7 6 4 34 34 H 1.08003 * 119.90778 * 180.25551 * 8 7 6 35 35 H 1.08004 * 119.70500 * 179.68199 * 12 11 10 36 36 H 1.08003 * 119.74589 * 179.97438 * 13 12 11 37 37 H 0.97002 * 120.00391 * 179.97438 * 19 18 16 38 38 H 1.08998 * 109.46870 * 179.97438 * 26 25 24 39 39 H 1.08998 * 109.46948 * 300.00268 * 26 25 24 40 40 H 1.08999 * 109.47216 * 59.99871 * 26 25 24 41 41 H 1.07998 * 120.09205 * 179.97438 * 27 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3498 1.5453 0.0005 5 8 4.0897 0.5819 0.0015 6 6 3.9143 2.9102 0.0000 7 6 3.0616 4.0188 -0.0005 8 6 3.5765 5.2831 0.0039 9 6 4.9611 5.4785 -0.0010 10 6 5.5141 6.8466 -0.0010 11 7 6.4278 7.1999 0.8978 12 6 6.9158 8.4257 0.8980 13 6 6.4874 9.3594 -0.0423 14 7 5.5882 9.0336 -0.9458 15 6 5.0788 7.7944 -0.9647 16 6 4.1170 7.4368 -1.9278 17 1 3.8113 6.4060 -2.0288 18 6 3.5556 8.4189 -2.7561 19 7 3.9251 9.6662 -2.6336 20 14 2.2733 7.9455 -4.0293 21 1 2.9469 7.6120 -5.3101 22 1 1.5110 6.7651 -3.5490 23 1 1.3425 9.0830 -4.2412 24 6 5.8239 4.3719 0.0000 25 8 7.1689 4.5564 0.0001 26 6 7.9847 3.3832 0.0005 27 6 5.2984 3.0920 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.9913 3.8740 -0.0001 34 1 2.9126 6.1350 0.0076 35 1 7.6541 8.7078 1.6342 36 1 6.8958 10.3592 -0.0293 37 1 3.5370 10.3456 -3.2070 38 1 9.0358 3.6716 0.0001 39 1 7.7702 2.7918 0.8907 40 1 7.7704 2.7912 -0.8892 41 1 5.9571 2.2362 0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244529849.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:55 Heat of formation + Delta-G solvation = -56.397740 kcal Electronic energy + Delta-G solvation = -27366.979043 eV Core-core repulsion = 23405.440066 eV Total energy + Delta-G solvation = -3961.538977 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 7.03 seconds Orbital eigenvalues (eV) -40.49354 -39.63547 -38.66058 -36.97289 -36.38739 -34.19738 -32.74661 -31.87156 -31.43144 -29.86651 -29.18577 -27.06376 -26.28734 -24.77914 -23.14770 -22.22747 -21.60081 -21.48256 -20.50874 -18.33628 -17.71556 -17.05150 -16.52444 -16.18595 -15.94242 -15.88173 -15.42891 -15.27106 -14.86343 -14.29098 -14.17660 -13.82378 -13.70506 -13.33745 -13.04023 -12.86704 -12.75623 -12.41975 -12.31347 -11.96001 -11.76427 -11.67977 -11.58122 -11.44329 -11.14113 -11.00007 -10.81085 -10.65474 -10.59213 -10.41418 -10.23451 -9.90611 -9.58329 -9.23759 -8.58895 -8.06582 -7.63227 -7.38078 -6.64335 -4.79018 0.92401 1.87613 2.35997 2.68374 2.74537 2.96111 2.97937 3.00179 3.16615 3.72992 3.75124 4.19784 4.53827 4.72419 4.77951 4.86448 5.10778 5.17195 5.23400 5.33395 5.42286 5.43325 5.50561 5.60620 5.61412 5.71494 5.74355 5.80124 5.91259 6.07928 6.17849 6.23484 6.31042 6.45286 6.55419 6.64579 6.74557 6.85034 6.94273 7.02681 7.23483 7.57790 7.82694 7.89157 7.93241 8.27461 8.53754 9.17247 9.73121 9.97866 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.010513 B = 0.004435 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.793482 B = 6311.488050 C = 8304.257596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.352 6.352 4 C 0.517 3.483 5 O -0.519 6.519 6 C -0.120 4.120 7 C -0.095 4.095 8 C -0.084 4.084 9 C 0.046 3.954 10 C -0.035 4.035 11 N -0.394 5.394 12 C -0.115 4.115 13 C 0.090 3.910 14 N -0.452 5.452 15 C 0.225 3.775 16 C -0.402 4.402 17 H 0.097 0.903 18 C 0.066 3.934 19 N -0.703 5.703 20 Si 0.908 3.092 21 H -0.265 1.265 22 H -0.254 1.254 23 H -0.273 1.273 24 C 0.119 3.881 25 O -0.289 6.289 26 C 0.025 3.975 27 C -0.147 4.147 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.134 0.866 34 H 0.144 0.856 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.280 0.720 38 H 0.095 0.905 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.171 -11.432 2.072 12.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.269 6.269 4 C 0.363 3.637 5 O -0.409 6.409 6 C -0.122 4.122 7 C -0.114 4.114 8 C -0.103 4.103 9 C 0.044 3.956 10 C -0.181 4.181 11 N -0.106 5.106 12 C -0.277 4.277 13 C -0.081 4.081 14 N -0.169 5.169 15 C 0.101 3.899 16 C -0.432 4.432 17 H 0.115 0.885 18 C -0.162 4.162 19 N -0.323 5.323 20 Si 0.731 3.269 21 H -0.190 1.190 22 H -0.178 1.178 23 H -0.198 1.198 24 C 0.073 3.927 25 O -0.201 6.201 26 C -0.070 4.070 27 C -0.166 4.166 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.152 0.848 34 H 0.161 0.839 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.928 -11.316 1.956 12.136 hybrid contribution -0.272 -0.496 -0.571 0.804 sum -4.199 -11.811 1.385 12.612 Atomic orbital electron populations 1.21806 0.92654 1.02789 1.03707 1.22992 0.95303 0.80409 1.02464 1.86575 1.24089 1.31923 1.84356 1.21282 0.80244 0.90029 0.72115 1.90779 1.60446 1.42726 1.46978 1.18631 0.93046 0.89438 1.11038 1.20900 0.99746 0.91341 0.99390 1.20928 0.93721 0.97236 0.98430 1.18058 0.91257 0.90230 0.96058 1.19839 1.03924 0.93878 1.00424 1.67725 1.04959 1.17247 1.20697 1.22578 1.08271 0.91636 1.05210 1.23574 0.93782 0.98915 0.91874 1.69535 1.09232 1.17115 1.20988 1.19198 0.91802 0.87487 0.91462 1.19795 1.15727 0.96008 1.11693 0.88496 1.26208 0.97537 0.94551 0.97855 1.70024 1.31370 1.01228 1.29637 0.86280 0.80169 0.79847 0.80621 1.19016 1.17769 1.19757 1.18953 0.83460 0.92055 0.98261 1.86267 1.13541 1.32011 1.88302 1.23017 0.95173 0.88015 1.00814 1.21069 0.94372 0.96254 1.04920 0.91388 0.91353 0.90393 0.91331 0.91354 0.84839 0.83868 0.85420 0.85178 0.90855 0.88644 0.93037 0.93134 0.84669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.29 37.16 0.38 -0.79 16 2 C 0.06 0.66 6.19 37.16 0.23 0.89 16 3 O -0.35 -4.90 9.45 -40.58 -0.38 -5.29 16 4 C 0.52 8.35 7.89 34.60 0.27 8.62 16 5 O -0.52 -9.16 16.12 -19.25 -0.31 -9.47 16 6 C -0.12 -2.04 5.88 -104.92 -0.62 -2.66 16 7 C -0.10 -1.57 9.54 -39.60 -0.38 -1.95 16 8 C -0.08 -1.59 7.62 -39.61 -0.30 -1.90 16 9 C 0.05 1.00 5.05 -104.71 -0.53 0.47 16 10 C -0.03 -0.86 6.01 -82.14 -0.49 -1.35 16 11 N -0.39 -9.65 9.92 -9.00 -0.09 -9.74 16 12 C -0.11 -2.60 11.22 -17.12 -0.19 -2.79 16 13 C 0.09 2.09 11.22 -17.28 -0.19 1.90 16 14 N -0.45 -11.90 8.09 -10.71 -0.09 -11.98 16 15 C 0.22 5.85 6.53 -84.54 -0.55 5.30 16 16 C -0.40 -9.89 7.82 -37.90 -0.30 -10.19 16 17 H 0.10 2.24 5.74 -52.49 -0.30 1.94 16 18 C 0.07 1.56 5.50 -17.31 -0.10 1.46 16 19 N -0.70 -17.32 11.52 55.56 0.64 -16.68 16 20 Si 0.91 17.18 29.56 -169.99 -5.03 12.15 16 21 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 22 H -0.25 -4.66 7.11 56.52 0.40 -4.26 16 23 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 24 C 0.12 2.38 6.68 -38.76 -0.26 2.12 16 25 O -0.29 -5.72 9.55 -18.98 -0.18 -5.90 16 26 C 0.03 0.36 9.81 101.05 0.99 1.35 16 27 C -0.15 -2.59 8.58 -39.03 -0.33 -2.93 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.13 1.87 7.59 -52.48 -0.40 1.47 16 34 H 0.14 2.68 7.45 -52.48 -0.39 2.29 16 35 H 0.13 2.49 8.06 -52.48 -0.42 2.06 16 36 H 0.13 2.56 8.06 -52.48 -0.42 2.14 16 37 H 0.28 6.20 8.29 -40.82 -0.34 5.87 16 38 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.05 0.66 7.66 -51.93 -0.40 0.26 16 40 H 0.05 0.65 7.66 -51.93 -0.40 0.25 16 41 H 0.14 2.18 5.88 -52.49 -0.31 1.87 16 LS Contribution 356.60 15.07 5.37 5.37 Total: -1.00 -30.72 356.60 -7.14 -37.86 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -4.71 Total: 6.11 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -2.36 Total: -2.44 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.46 Total: -38.40 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.87 Total: -20.65 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.15 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.72 -7.14 -37.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244529849.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.538 kcal (2) G-P(sol) polarization free energy of solvation -30.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.03 seconds