Wall clock time and date at job start Tue Mar 31 2020 16:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45196 * 109.47411 * 2 1 4 4 C 1.34731 * 116.99800 * 179.97438 * 3 2 1 5 5 O 1.21475 * 120.00262 * 359.97438 * 4 3 2 6 6 C 1.47700 * 119.99420 * 179.97438 * 4 3 2 7 7 C 1.39864 * 119.96549 * 0.02562 * 6 4 3 8 8 C 1.36511 * 120.27399 * 179.76049 * 7 6 4 9 9 C 1.39827 * 120.19336 * 0.47289 * 8 7 6 10 10 C 1.47570 * 120.04187 * 179.78388 * 9 8 7 11 11 N 1.32945 * 120.26015 * 128.25801 * 10 9 8 12 12 C 1.31938 * 120.07985 * 180.27474 * 11 10 9 13 13 C 1.39264 * 120.59737 * 359.70239 * 12 11 10 14 14 N 1.31573 * 120.52171 * 0.02562 * 13 12 11 15 15 C 1.33994 * 119.90201 * 359.97438 * 14 13 12 16 16 C 1.40731 * 120.29501 * 180.02562 * 15 14 13 17 17 H 1.07991 * 120.00022 * 171.45689 * 16 15 14 18 18 C 1.40210 * 119.99520 * 351.45810 * 16 15 14 19 19 N 1.30657 * 120.00666 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99830 * 180.27420 * 18 16 15 21 21 H 1.48504 * 109.47199 * 269.72485 * 20 18 16 22 22 H 1.48498 * 109.47172 * 29.72373 * 20 18 16 23 23 H 1.48497 * 109.47456 * 149.72354 * 20 18 16 24 24 C 1.40320 * 119.91117 * 359.50665 * 9 8 7 25 25 O 1.35756 * 120.13412 * 180.23258 * 24 9 8 26 26 C 1.42900 * 117.00341 * 180.02562 * 25 24 9 27 27 C 1.38356 * 119.73158 * 0.25550 * 24 9 8 28 28 H 1.09002 * 109.46942 * 300.00303 * 1 2 3 29 29 H 1.09006 * 109.46895 * 59.99916 * 1 2 3 30 30 H 1.09002 * 109.47387 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46942 * 239.99697 * 2 1 3 32 32 H 1.08997 * 109.46998 * 120.00311 * 2 1 3 33 33 H 1.08003 * 119.85760 * 0.02562 * 7 6 4 34 34 H 1.08003 * 119.90778 * 180.25551 * 8 7 6 35 35 H 1.08004 * 119.70500 * 179.68199 * 12 11 10 36 36 H 1.08003 * 119.74589 * 179.97438 * 13 12 11 37 37 H 0.97002 * 120.00391 * 179.97438 * 19 18 16 38 38 H 1.08998 * 109.46870 * 179.97438 * 26 25 24 39 39 H 1.08998 * 109.46948 * 300.00268 * 26 25 24 40 40 H 1.08999 * 109.47216 * 59.99871 * 26 25 24 41 41 H 1.07998 * 120.09205 * 179.97438 * 27 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3498 1.5453 0.0005 5 8 4.0897 0.5819 0.0015 6 6 3.9143 2.9102 0.0000 7 6 3.0616 4.0188 -0.0005 8 6 3.5765 5.2831 0.0039 9 6 4.9611 5.4785 -0.0010 10 6 5.5141 6.8466 -0.0010 11 7 6.4278 7.1999 0.8978 12 6 6.9158 8.4257 0.8980 13 6 6.4874 9.3594 -0.0423 14 7 5.5882 9.0336 -0.9458 15 6 5.0788 7.7944 -0.9647 16 6 4.1170 7.4368 -1.9278 17 1 3.8113 6.4060 -2.0288 18 6 3.5556 8.4189 -2.7561 19 7 3.9251 9.6662 -2.6336 20 14 2.2733 7.9455 -4.0293 21 1 2.9469 7.6120 -5.3101 22 1 1.5110 6.7651 -3.5490 23 1 1.3425 9.0830 -4.2412 24 6 5.8239 4.3719 0.0000 25 8 7.1689 4.5564 0.0001 26 6 7.9847 3.3832 0.0005 27 6 5.2984 3.0920 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.9913 3.8740 -0.0001 34 1 2.9126 6.1350 0.0076 35 1 7.6541 8.7078 1.6342 36 1 6.8958 10.3592 -0.0293 37 1 3.5370 10.3456 -3.2070 38 1 9.0358 3.6716 0.0001 39 1 7.7702 2.7918 0.8907 40 1 7.7704 2.7912 -0.8892 41 1 5.9571 2.2362 0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244529849.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:52 Heat of formation + Delta-G solvation = -74.071442 kcal Electronic energy + Delta-G solvation = -27367.745433 eV Core-core repulsion = 23405.440066 eV Total energy + Delta-G solvation = -3962.305366 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -41.80077 -41.09690 -40.29619 -38.32188 -37.61254 -35.96968 -34.38867 -33.32056 -32.54812 -31.27937 -30.76828 -28.28371 -28.03288 -26.21572 -24.28036 -23.85655 -23.04028 -22.91106 -21.88980 -19.65546 -19.49086 -18.33076 -17.89939 -17.57917 -17.44899 -17.22260 -16.88337 -16.67619 -16.44199 -15.91536 -15.28529 -15.14401 -15.01398 -14.80377 -14.45311 -14.32903 -13.96256 -13.60352 -13.56426 -13.26697 -13.13856 -13.00285 -12.90817 -12.62127 -12.50040 -12.41825 -12.19666 -12.00986 -11.94702 -11.67522 -11.56626 -11.51211 -11.43947 -11.01686 -10.16552 -9.65749 -9.36811 -9.02078 -8.39913 -6.62030 -0.49736 0.45674 0.63686 1.11164 1.41616 1.52017 1.54642 1.57094 1.57938 2.18479 2.43751 2.73517 2.80581 3.53351 3.72556 3.74013 3.89176 4.04557 4.07354 4.10624 4.18503 4.20085 4.33819 4.36025 4.37584 4.50223 4.60221 4.64652 4.71174 4.75237 4.82818 4.96544 4.97071 5.08934 5.13827 5.17672 5.20218 5.29475 5.41768 5.51138 5.74145 5.82133 6.12806 6.43672 6.52568 6.65296 6.72809 7.36194 7.91004 8.27478 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.010513 B = 0.004435 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.793482 B = 6311.488050 C = 8304.257596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 O -0.352 6.352 4 C 0.523 3.477 5 O -0.535 6.535 6 C -0.116 4.116 7 C -0.083 4.083 8 C -0.084 4.084 9 C 0.008 3.992 10 C -0.040 4.040 11 N -0.414 5.414 12 C -0.120 4.120 13 C 0.078 3.922 14 N -0.488 5.488 15 C 0.194 3.806 16 C -0.421 4.421 17 H 0.104 0.896 18 C 0.026 3.974 19 N -0.741 5.741 20 Si 0.979 3.021 21 H -0.265 1.265 22 H -0.242 1.242 23 H -0.264 1.264 24 C 0.113 3.887 25 O -0.321 6.321 26 C 0.017 3.983 27 C -0.143 4.143 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.163 0.837 34 H 0.139 0.861 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.287 0.713 38 H 0.114 0.886 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.716 -13.580 1.756 14.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.268 6.268 4 C 0.370 3.630 5 O -0.427 6.427 6 C -0.117 4.117 7 C -0.101 4.101 8 C -0.103 4.103 9 C 0.005 3.995 10 C -0.186 4.186 11 N -0.127 5.127 12 C -0.282 4.282 13 C -0.092 4.092 14 N -0.205 5.205 15 C 0.070 3.930 16 C -0.451 4.451 17 H 0.122 0.878 18 C -0.198 4.198 19 N -0.361 5.361 20 Si 0.798 3.202 21 H -0.190 1.190 22 H -0.165 1.165 23 H -0.188 1.188 24 C 0.067 3.933 25 O -0.234 6.234 26 C -0.077 4.077 27 C -0.162 4.162 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.121 0.879 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.181 0.819 34 H 0.156 0.844 35 H 0.176 0.824 36 H 0.177 0.823 37 H 0.098 0.902 38 H 0.132 0.868 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.461 -13.467 1.669 14.628 hybrid contribution 0.253 0.043 -0.387 0.464 sum -5.208 -13.424 1.283 14.456 Atomic orbital electron populations 1.21839 0.90222 1.04478 1.03808 1.23377 0.97168 0.78693 1.02840 1.86565 1.22461 1.34156 1.83636 1.21031 0.81027 0.89194 0.71786 1.90775 1.61091 1.43040 1.47749 1.18857 0.92995 0.90372 1.09492 1.21097 1.01114 0.90032 0.97874 1.20922 0.92737 0.98184 0.98462 1.18203 0.92641 0.89503 0.99119 1.20227 1.03535 0.95124 0.99732 1.67796 1.05679 1.18033 1.21158 1.23080 1.08410 0.91184 1.05528 1.24051 0.93316 1.00357 0.91511 1.69489 1.10593 1.17823 1.22550 1.19644 0.92809 0.88014 0.92577 1.20068 1.16119 0.96740 1.12202 0.87822 1.27097 0.99179 0.94116 0.99407 1.70100 1.32788 1.02401 1.30841 0.85221 0.77449 0.80046 0.77451 1.18996 1.16509 1.18835 1.19008 0.83653 0.92336 0.98327 1.86214 1.13832 1.34986 1.88363 1.23323 0.95385 0.86968 1.02023 1.21189 0.95041 0.95745 1.04247 0.91207 0.91305 0.87907 0.91062 0.90967 0.81918 0.84364 0.82442 0.82340 0.90192 0.86764 0.91671 0.91927 0.83148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 10.29 71.98 0.74 -1.04 16 2 C 0.05 0.97 6.19 71.98 0.45 1.41 16 3 O -0.35 -8.82 9.45 -56.42 -0.53 -9.35 16 4 C 0.52 15.68 7.89 70.32 0.56 16.24 16 5 O -0.53 -17.72 16.12 19.92 0.32 -17.40 16 6 C -0.12 -3.72 5.88 -20.05 -0.12 -3.84 16 7 C -0.08 -2.61 9.54 22.26 0.21 -2.39 16 8 C -0.08 -3.18 7.62 22.25 0.17 -3.01 16 9 C 0.01 0.33 5.05 -19.92 -0.10 0.23 16 10 C -0.04 -2.03 6.01 42.37 0.25 -1.78 16 11 N -0.41 -20.78 9.92 -182.37 -1.81 -22.59 16 12 C -0.12 -5.54 11.22 84.92 0.95 -4.59 16 13 C 0.08 3.69 11.22 84.98 0.95 4.65 16 14 N -0.49 -26.50 8.09 -187.79 -1.52 -28.02 16 15 C 0.19 10.45 6.53 40.36 0.26 10.71 16 16 C -0.42 -21.22 7.82 23.36 0.18 -21.04 16 17 H 0.10 4.88 5.74 -2.92 -0.02 4.86 16 18 C 0.03 1.25 5.50 85.35 0.47 1.72 16 19 N -0.74 -37.32 11.52 21.87 0.25 -37.07 16 20 Si 0.98 34.87 29.56 68.60 2.03 36.90 16 21 H -0.27 -9.37 7.11 99.48 0.71 -8.66 16 22 H -0.24 -8.06 7.11 99.48 0.71 -7.36 16 23 H -0.26 -8.93 7.11 99.48 0.71 -8.23 16 24 C 0.11 4.53 6.68 22.80 0.15 4.68 16 25 O -0.32 -12.76 9.55 -90.82 -0.87 -13.63 16 26 C 0.02 0.47 9.81 113.37 1.11 1.59 16 27 C -0.14 -4.89 8.58 22.63 0.19 -4.69 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.16 4.09 7.59 -2.91 -0.02 4.07 16 34 H 0.14 5.27 7.45 -2.91 -0.02 5.25 16 35 H 0.16 6.05 8.06 -2.91 -0.02 6.03 16 36 H 0.16 6.28 8.06 -2.91 -0.02 6.26 16 37 H 0.29 12.94 8.29 -92.71 -0.77 12.18 16 38 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.06 1.57 7.66 -2.39 -0.02 1.55 16 40 H 0.06 1.53 7.66 -2.39 -0.02 1.51 16 41 H 0.15 4.59 5.88 -2.91 -0.02 4.57 16 Total: -1.00 -68.14 356.60 5.39 -62.76 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 1.07 Total: 29.55 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 6.44 Total: -1.15 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -3.08 Total: -87.67 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: -1.08 Total: -40.38 kcal Atomic # 14 Polarization: 34.87 SS G_CDS: 2.03 Total: 36.90 kcal Total: -68.14 5.39 -62.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244529849.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.316 kcal (2) G-P(sol) polarization free energy of solvation -68.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds