Wall clock time and date at job start Tue Mar 31 2020 16:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45196 * 109.46996 * 2 1 4 4 C 1.34730 * 116.99968 * 179.97438 * 3 2 1 5 5 O 1.21483 * 119.99542 * 359.97438 * 4 3 2 6 6 C 1.47693 * 120.00209 * 180.02562 * 4 3 2 7 7 C 1.39786 * 119.98996 * 359.97438 * 6 4 3 8 8 C 1.37634 * 120.10069 * 180.02562 * 7 6 4 9 9 C 1.39517 * 120.09369 * 359.97438 * 8 7 6 10 10 C 1.48139 * 120.01266 * 180.02562 * 9 8 7 11 11 C 1.40099 * 119.98788 * 313.47558 * 10 9 8 12 12 N 1.32170 * 120.28896 * 180.02562 * 11 10 9 13 13 C 1.31889 * 120.29028 * 359.70514 * 12 11 10 14 14 C 1.40848 * 119.97352 * 0.57157 * 13 12 11 15 15 C 1.41334 * 120.14559 * 179.70375 * 14 13 12 16 16 H 1.08000 * 120.00357 * 206.16016 * 15 14 13 17 17 C 1.40048 * 119.99321 * 26.15677 * 15 14 13 18 18 N 1.30731 * 120.00652 * 17.31593 * 17 15 14 19 19 Si 1.86809 * 119.99571 * 197.31429 * 17 15 14 20 20 H 1.48499 * 109.47081 * 265.01905 * 19 17 15 21 21 H 1.48494 * 109.47071 * 25.01792 * 19 17 15 22 22 H 1.48504 * 109.46848 * 145.02055 * 19 17 15 23 23 N 1.32575 * 119.99618 * 133.49972 * 10 9 8 24 24 C 1.39980 * 119.97895 * 0.26836 * 9 8 7 25 25 O 1.35820 * 120.04956 * 179.73012 * 24 9 8 26 26 C 1.42898 * 116.99966 * 180.02562 * 25 24 9 27 27 C 1.38321 * 119.89814 * 359.47086 * 24 9 8 28 28 H 1.09002 * 109.47220 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47634 * 299.99946 * 1 2 3 30 30 H 1.09003 * 109.47382 * 60.00044 * 1 2 3 31 31 H 1.08999 * 109.47192 * 239.99754 * 2 1 3 32 32 H 1.08998 * 109.46691 * 119.99886 * 2 1 3 33 33 H 1.07992 * 119.94917 * 0.03013 * 7 6 4 34 34 H 1.08003 * 119.95285 * 179.97438 * 8 7 6 35 35 H 1.08004 * 119.85596 * 0.04610 * 11 10 9 36 36 H 1.07997 * 120.01643 * 180.29802 * 13 12 11 37 37 H 0.96995 * 120.00255 * 179.97438 * 18 17 15 38 38 H 1.09002 * 109.46916 * 299.99617 * 26 25 24 39 39 H 1.08996 * 109.47129 * 59.99140 * 26 25 24 40 40 H 1.08995 * 109.47167 * 179.97438 * 26 25 24 41 41 H 1.07997 * 120.04621 * 180.24895 * 27 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3496 1.5455 0.0005 5 8 4.0896 0.5820 0.0015 6 6 3.9141 2.9103 0.0011 7 6 3.0624 4.0187 0.0006 8 6 3.5861 5.2915 0.0006 9 6 4.9686 5.4792 0.0017 10 6 5.5302 6.8500 0.0023 11 6 5.0238 7.8146 -0.8785 12 7 5.5209 9.0393 -0.8833 13 6 6.4939 9.3656 -0.0550 14 6 7.0158 8.4034 0.8314 15 6 8.0628 8.7474 1.7162 16 1 8.7384 7.9854 2.0757 17 6 8.2242 10.0766 2.1267 18 7 7.2436 10.9291 1.9826 19 14 9.8409 10.6316 2.8804 20 1 9.7483 10.5573 4.3606 21 1 10.9365 9.7475 2.4080 22 1 10.1230 12.0311 2.4716 23 7 6.5122 7.1636 0.8360 24 6 5.8248 4.3719 -0.0029 25 8 7.1709 4.5530 -0.0073 26 6 7.9836 3.3776 -0.0125 27 6 5.2979 3.0929 0.0026 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 1.9920 3.8761 0.0003 34 1 2.9258 6.1462 -0.0002 35 1 4.2236 7.5565 -1.5563 36 1 6.8935 10.3689 -0.0594 37 1 7.3553 11.8496 2.2673 38 1 7.7708 2.7849 0.8772 39 1 7.7643 2.7881 -0.9027 40 1 9.0354 3.6632 -0.0162 41 1 5.9564 2.2369 0.0031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244530590.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:17 Heat of formation + Delta-G solvation = -64.102563 kcal Electronic energy + Delta-G solvation = -26659.529741 eV Core-core repulsion = 22697.656658 eV Total energy + Delta-G solvation = -3961.873083 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 5.60 seconds Orbital eigenvalues (eV) -40.71648 -39.82706 -38.80377 -37.18580 -36.59527 -34.22284 -32.99064 -32.09253 -31.55297 -30.10777 -29.13236 -27.24321 -26.25412 -24.93902 -23.27507 -22.40786 -21.85787 -21.55368 -20.74037 -18.57253 -17.77201 -17.17435 -16.70136 -16.22617 -16.05359 -15.66018 -15.61088 -15.39659 -15.20027 -14.81567 -14.34061 -14.04762 -13.74441 -13.49884 -13.20275 -13.06540 -12.90467 -12.51541 -12.29750 -12.12217 -11.91992 -11.72547 -11.57189 -11.36472 -11.25362 -11.13754 -10.94078 -10.92033 -10.74892 -10.58065 -10.40767 -9.87054 -9.79360 -9.40180 -8.86766 -8.19331 -7.67671 -7.29895 -7.05704 -4.71957 0.61955 1.53177 2.24452 2.47365 2.59265 2.86701 2.98490 3.03129 3.09272 3.53527 3.77640 3.88371 4.43595 4.49939 4.65349 4.70966 4.89804 4.90903 4.98372 5.13998 5.18355 5.30447 5.33437 5.42575 5.48360 5.62612 5.64994 5.67793 5.73149 5.84873 5.89588 6.11292 6.20267 6.27746 6.31768 6.39424 6.59030 6.76561 6.91119 6.98735 7.17543 7.57383 7.61113 7.67171 8.13463 8.40907 8.47117 9.11527 9.60000 9.93321 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.021195 B = 0.002705 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.775843 B =10350.040928 C =11024.175454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.352 6.352 4 C 0.515 3.485 5 O -0.512 6.512 6 C -0.102 4.102 7 C -0.098 4.098 8 C -0.084 4.084 9 C -0.002 4.002 10 C 0.127 3.873 11 C -0.081 4.081 12 N -0.444 5.444 13 C 0.016 3.984 14 C 0.227 3.773 15 C -0.422 4.422 16 H 0.091 0.909 17 C 0.075 3.925 18 N -0.785 5.785 19 Si 0.923 3.077 20 H -0.268 1.268 21 H -0.257 1.257 22 H -0.272 1.272 23 N -0.496 5.496 24 C 0.144 3.856 25 O -0.281 6.281 26 C 0.024 3.976 27 C -0.152 4.152 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.131 0.869 36 H 0.158 0.842 37 H 0.289 0.711 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.100 0.900 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.265 -14.575 -2.644 16.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.269 6.269 4 C 0.361 3.639 5 O -0.402 6.402 6 C -0.103 4.103 7 C -0.116 4.116 8 C -0.103 4.103 9 C -0.004 4.004 10 C -0.017 4.017 11 C -0.238 4.238 12 N -0.155 5.155 13 C -0.155 4.155 14 C 0.098 3.902 15 C -0.455 4.455 16 H 0.109 0.891 17 C -0.146 4.146 18 N -0.411 5.411 19 Si 0.747 3.253 20 H -0.193 1.193 21 H -0.181 1.181 22 H -0.197 1.197 23 N -0.215 5.215 24 C 0.097 3.903 25 O -0.192 6.192 26 C -0.072 4.072 27 C -0.171 4.171 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.157 0.843 34 H 0.159 0.841 35 H 0.148 0.852 36 H 0.175 0.825 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.118 0.882 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.043 -14.490 -2.622 16.323 hybrid contribution 0.630 -0.155 0.432 0.780 sum -6.413 -14.645 -2.190 16.137 Atomic orbital electron populations 1.21810 0.92516 1.02943 1.03704 1.23030 0.95390 0.80118 1.02625 1.86560 1.23852 1.32248 1.84254 1.21214 0.80433 0.89904 0.72351 1.90807 1.60451 1.42593 1.46339 1.18716 0.93089 0.89702 1.08843 1.21167 0.99938 0.91076 0.99463 1.21049 0.93074 0.97376 0.98777 1.18389 0.91756 0.90900 0.99402 1.20127 0.94918 0.91502 0.95111 1.22622 1.05796 0.90488 1.04883 1.67904 1.09233 1.17558 1.20823 1.23827 0.96314 1.01834 0.93509 1.19354 0.91882 0.87218 0.91708 1.19340 1.09799 0.93512 1.22861 0.89089 1.26029 0.98232 0.96044 0.94291 1.69723 1.30867 1.05741 1.34731 0.86041 0.81120 0.78650 0.79523 1.19260 1.18062 1.19696 1.69088 1.10248 1.20511 1.21613 1.18823 0.83916 0.91780 0.95826 1.86384 1.13074 1.32235 1.87525 1.23091 0.95547 0.87684 1.00854 1.21149 0.94480 0.96495 1.04987 0.90257 0.91341 0.91361 0.91211 0.91199 0.84350 0.84102 0.85186 0.82483 0.90020 0.92749 0.93053 0.88165 0.84134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.29 37.16 0.38 -0.56 16 2 C 0.06 0.56 6.19 37.16 0.23 0.79 16 3 O -0.35 -4.19 9.45 -40.57 -0.38 -4.58 16 4 C 0.52 7.27 7.89 34.59 0.27 7.55 16 5 O -0.51 -8.15 16.12 -19.25 -0.31 -8.46 16 6 C -0.10 -1.49 5.87 -104.96 -0.62 -2.11 16 7 C -0.10 -1.33 9.59 -39.22 -0.38 -1.70 16 8 C -0.08 -1.30 9.39 -39.33 -0.37 -1.67 16 9 C 0.00 -0.04 5.65 -104.70 -0.59 -0.63 16 10 C 0.13 2.96 6.08 -82.78 -0.50 2.46 16 11 C -0.08 -1.87 10.61 -16.71 -0.18 -2.04 16 12 N -0.44 -11.23 10.47 -12.03 -0.13 -11.36 16 13 C 0.02 0.42 9.87 -16.54 -0.16 0.26 16 14 C 0.23 6.15 6.39 -84.84 -0.54 5.61 16 15 C -0.42 -10.96 9.28 -37.73 -0.35 -11.31 16 16 H 0.09 2.32 7.90 -52.49 -0.41 1.91 16 17 C 0.08 1.78 5.13 -17.34 -0.09 1.69 16 18 N -0.79 -19.20 11.03 55.55 0.61 -18.59 16 19 Si 0.92 17.64 29.59 -169.99 -5.03 12.61 16 20 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 21 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 22 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 23 N -0.50 -12.99 9.64 -7.52 -0.07 -13.06 16 24 C 0.14 2.61 6.65 -38.90 -0.26 2.35 16 25 O -0.28 -5.31 9.36 -19.18 -0.18 -5.49 16 26 C 0.02 0.32 9.81 101.05 0.99 1.31 16 27 C -0.15 -2.37 8.57 -39.05 -0.33 -2.71 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.14 1.51 7.59 -52.49 -0.40 1.11 16 34 H 0.14 1.96 7.96 -52.48 -0.42 1.54 16 35 H 0.13 2.55 7.96 -52.48 -0.42 2.14 16 36 H 0.16 4.14 6.25 -52.49 -0.33 3.81 16 37 H 0.29 6.31 8.29 -40.82 -0.34 5.98 16 38 H 0.05 0.66 7.65 -51.93 -0.40 0.26 16 39 H 0.05 0.59 7.67 -51.93 -0.40 0.19 16 40 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.14 2.01 5.87 -52.49 -0.31 1.70 16 LS Contribution 360.26 15.07 5.43 5.43 Total: -1.00 -30.99 360.26 -7.31 -38.30 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -4.75 Total: 5.92 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -2.50 Total: -0.74 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.41 Total: -43.01 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.87 Total: -18.52 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.99 -7.31 -38.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244530590.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.802 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.60 seconds