Wall clock time and date at job start Tue Mar 31 2020 16:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45196 * 109.46996 * 2 1 4 4 C 1.34730 * 116.99968 * 179.97438 * 3 2 1 5 5 O 1.21483 * 119.99542 * 359.97438 * 4 3 2 6 6 C 1.47693 * 120.00209 * 180.02562 * 4 3 2 7 7 C 1.39786 * 119.98996 * 359.97438 * 6 4 3 8 8 C 1.37634 * 120.10069 * 180.02562 * 7 6 4 9 9 C 1.39517 * 120.09369 * 359.97438 * 8 7 6 10 10 C 1.48139 * 120.01266 * 180.02562 * 9 8 7 11 11 C 1.40099 * 119.98788 * 313.47558 * 10 9 8 12 12 N 1.32170 * 120.28896 * 180.02562 * 11 10 9 13 13 C 1.31889 * 120.29028 * 359.70514 * 12 11 10 14 14 C 1.40848 * 119.97352 * 0.57157 * 13 12 11 15 15 C 1.41334 * 120.14559 * 179.70375 * 14 13 12 16 16 H 1.08000 * 120.00357 * 206.16016 * 15 14 13 17 17 C 1.40048 * 119.99321 * 26.15677 * 15 14 13 18 18 N 1.30731 * 120.00652 * 17.31593 * 17 15 14 19 19 Si 1.86809 * 119.99571 * 197.31429 * 17 15 14 20 20 H 1.48499 * 109.47081 * 265.01905 * 19 17 15 21 21 H 1.48494 * 109.47071 * 25.01792 * 19 17 15 22 22 H 1.48504 * 109.46848 * 145.02055 * 19 17 15 23 23 N 1.32575 * 119.99618 * 133.49972 * 10 9 8 24 24 C 1.39980 * 119.97895 * 0.26836 * 9 8 7 25 25 O 1.35820 * 120.04956 * 179.73012 * 24 9 8 26 26 C 1.42898 * 116.99966 * 180.02562 * 25 24 9 27 27 C 1.38321 * 119.89814 * 359.47086 * 24 9 8 28 28 H 1.09002 * 109.47220 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47634 * 299.99946 * 1 2 3 30 30 H 1.09003 * 109.47382 * 60.00044 * 1 2 3 31 31 H 1.08999 * 109.47192 * 239.99754 * 2 1 3 32 32 H 1.08998 * 109.46691 * 119.99886 * 2 1 3 33 33 H 1.07992 * 119.94917 * 0.03013 * 7 6 4 34 34 H 1.08003 * 119.95285 * 179.97438 * 8 7 6 35 35 H 1.08004 * 119.85596 * 0.04610 * 11 10 9 36 36 H 1.07997 * 120.01643 * 180.29802 * 13 12 11 37 37 H 0.96995 * 120.00255 * 179.97438 * 18 17 15 38 38 H 1.09002 * 109.46916 * 299.99617 * 26 25 24 39 39 H 1.08996 * 109.47129 * 59.99140 * 26 25 24 40 40 H 1.08995 * 109.47167 * 179.97438 * 26 25 24 41 41 H 1.07997 * 120.04621 * 180.24895 * 27 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3496 1.5455 0.0005 5 8 4.0896 0.5820 0.0015 6 6 3.9141 2.9103 0.0011 7 6 3.0624 4.0187 0.0006 8 6 3.5861 5.2915 0.0006 9 6 4.9686 5.4792 0.0017 10 6 5.5302 6.8500 0.0023 11 6 5.0238 7.8146 -0.8785 12 7 5.5209 9.0393 -0.8833 13 6 6.4939 9.3656 -0.0550 14 6 7.0158 8.4034 0.8314 15 6 8.0628 8.7474 1.7162 16 1 8.7384 7.9854 2.0757 17 6 8.2242 10.0766 2.1267 18 7 7.2436 10.9291 1.9826 19 14 9.8409 10.6316 2.8804 20 1 9.7483 10.5573 4.3606 21 1 10.9365 9.7475 2.4080 22 1 10.1230 12.0311 2.4716 23 7 6.5122 7.1636 0.8360 24 6 5.8248 4.3719 -0.0029 25 8 7.1709 4.5530 -0.0073 26 6 7.9836 3.3776 -0.0125 27 6 5.2979 3.0929 0.0026 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 1.9920 3.8761 0.0003 34 1 2.9258 6.1462 -0.0002 35 1 4.2236 7.5565 -1.5563 36 1 6.8935 10.3689 -0.0594 37 1 7.3553 11.8496 2.2673 38 1 7.7708 2.7849 0.8772 39 1 7.7643 2.7881 -0.9027 40 1 9.0354 3.6632 -0.0162 41 1 5.9564 2.2369 0.0031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244530590.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:08 Heat of formation + Delta-G solvation = -82.683221 kcal Electronic energy + Delta-G solvation = -26660.335459 eV Core-core repulsion = 22697.656658 eV Total energy + Delta-G solvation = -3962.678801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -41.88028 -41.19631 -40.46060 -38.39945 -37.66661 -36.05714 -34.71124 -33.45363 -32.54250 -31.36686 -30.71590 -28.41380 -28.04123 -26.30383 -24.29823 -24.04156 -23.20724 -22.94383 -21.98741 -19.82123 -19.45293 -18.32929 -17.92020 -17.61899 -17.31332 -17.23013 -17.04164 -16.86079 -16.67466 -16.43049 -15.25114 -15.17612 -15.08389 -14.93826 -14.56068 -14.44268 -13.73471 -13.62425 -13.57501 -13.47057 -13.13403 -12.99286 -12.92527 -12.74031 -12.70442 -12.47801 -12.31332 -12.08163 -12.01469 -11.81369 -11.69018 -11.63899 -11.53006 -11.13182 -10.32052 -9.69442 -9.42752 -9.04407 -8.86176 -6.66965 -0.65854 0.31665 0.54921 0.89262 1.39984 1.43034 1.50129 1.50745 1.58003 2.17487 2.35282 2.54943 2.69060 3.32857 3.52799 3.62933 3.78019 3.96064 4.03930 4.06464 4.07725 4.10665 4.27099 4.32565 4.36735 4.40001 4.46247 4.60207 4.62613 4.68405 4.77081 4.96542 4.97799 4.98328 5.09782 5.10391 5.15149 5.30665 5.32723 5.39828 5.58514 5.70161 6.15992 6.38219 6.52112 6.55433 6.59601 7.19599 7.68891 8.15650 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.021195 B = 0.002705 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.775843 B =10350.040928 C =11024.175454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.349 6.349 4 C 0.520 3.480 5 O -0.532 6.532 6 C -0.098 4.098 7 C -0.081 4.081 8 C -0.073 4.073 9 C -0.043 4.043 10 C 0.134 3.866 11 C -0.089 4.089 12 N -0.452 5.452 13 C -0.016 4.016 14 C 0.202 3.798 15 C -0.452 4.452 16 H 0.083 0.917 17 C 0.040 3.960 18 N -0.811 5.811 19 Si 1.000 3.000 20 H -0.260 1.260 21 H -0.257 1.257 22 H -0.257 1.257 23 N -0.522 5.522 24 C 0.133 3.867 25 O -0.319 6.319 26 C 0.017 3.983 27 C -0.149 4.149 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.174 0.826 34 H 0.158 0.842 35 H 0.166 0.834 36 H 0.148 0.852 37 H 0.300 0.700 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.110 0.890 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.636 -16.151 -2.486 18.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 O -0.265 6.265 4 C 0.367 3.633 5 O -0.424 6.424 6 C -0.099 4.099 7 C -0.099 4.099 8 C -0.091 4.091 9 C -0.045 4.045 10 C -0.011 4.011 11 C -0.246 4.246 12 N -0.164 5.164 13 C -0.185 4.185 14 C 0.074 3.926 15 C -0.485 4.485 16 H 0.101 0.899 17 C -0.179 4.179 18 N -0.436 5.436 19 Si 0.819 3.181 20 H -0.184 1.184 21 H -0.181 1.181 22 H -0.181 1.181 23 N -0.241 5.241 24 C 0.086 3.914 25 O -0.232 6.232 26 C -0.077 4.077 27 C -0.168 4.168 28 H 0.119 0.881 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.191 0.809 34 H 0.175 0.825 35 H 0.183 0.817 36 H 0.166 0.834 37 H 0.112 0.888 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.128 0.872 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.433 -16.052 -2.467 18.300 hybrid contribution 0.877 0.102 0.347 0.948 sum -7.557 -15.950 -2.120 17.777 Atomic orbital electron populations 1.21838 0.90149 1.04485 1.03892 1.23383 0.97190 0.78611 1.02855 1.86551 1.22242 1.34186 1.83541 1.21047 0.81155 0.89205 0.71922 1.90804 1.61162 1.43101 1.47306 1.18944 0.92921 0.90691 1.07388 1.21446 1.01412 0.89632 0.97429 1.21236 0.91597 0.98915 0.97398 1.18467 0.93517 0.89127 1.03376 1.20709 0.93408 0.93478 0.93491 1.23188 1.06370 0.89808 1.05253 1.67855 1.09028 1.18901 1.20590 1.23609 0.98059 1.01665 0.95128 1.19674 0.92685 0.87909 0.92364 1.19571 1.10215 0.94858 1.23894 0.89858 1.26945 1.01706 0.95107 0.94118 1.69747 1.32726 1.06488 1.34631 0.84928 0.75941 0.78580 0.78693 1.18417 1.18086 1.18097 1.69127 1.11650 1.20291 1.23006 1.18935 0.83733 0.92382 0.96317 1.86323 1.13941 1.35118 1.87805 1.23347 0.95441 0.86714 1.02241 1.21210 0.95298 0.95738 1.04588 0.88056 0.91214 0.91070 0.90947 0.91124 0.80907 0.82465 0.81731 0.83441 0.88835 0.91687 0.91199 0.87157 0.83061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.29 71.98 0.74 -0.61 16 2 C 0.05 0.81 6.19 71.98 0.45 1.25 16 3 O -0.35 -7.24 9.45 -56.40 -0.53 -7.78 16 4 C 0.52 13.40 7.89 70.32 0.56 13.95 16 5 O -0.53 -15.89 16.12 19.89 0.32 -15.57 16 6 C -0.10 -2.64 5.87 -20.08 -0.12 -2.76 16 7 C -0.08 -1.95 9.59 22.50 0.22 -1.73 16 8 C -0.07 -2.11 9.39 22.44 0.21 -1.90 16 9 C -0.04 -1.63 5.65 -19.92 -0.11 -1.74 16 10 C 0.13 6.36 6.08 42.11 0.26 6.62 16 11 C -0.09 -4.12 10.61 85.09 0.90 -3.21 16 12 N -0.45 -23.52 10.47 -191.98 -2.01 -25.53 16 13 C -0.02 -0.88 9.87 85.32 0.84 -0.04 16 14 C 0.20 11.44 6.39 40.24 0.26 11.70 16 15 C -0.45 -24.59 9.28 23.47 0.22 -24.37 16 16 H 0.08 4.48 7.90 -2.91 -0.02 4.46 16 17 C 0.04 1.94 5.13 85.30 0.44 2.38 16 18 N -0.81 -40.61 11.03 21.84 0.24 -40.37 16 19 Si 1.00 36.30 29.59 68.60 2.03 38.33 16 20 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 21 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 22 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 23 N -0.52 -28.44 9.64 -177.70 -1.71 -30.15 16 24 C 0.13 4.83 6.65 22.71 0.15 4.98 16 25 O -0.32 -12.34 9.36 -91.53 -0.86 -13.20 16 26 C 0.02 0.45 9.81 113.37 1.11 1.56 16 27 C -0.15 -4.48 8.57 22.61 0.19 -4.29 16 28 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.62 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.17 2.98 7.59 -2.91 -0.02 2.96 16 34 H 0.16 3.99 7.96 -2.91 -0.02 3.96 16 35 H 0.17 6.28 7.96 -2.91 -0.02 6.26 16 36 H 0.15 8.23 6.25 -2.91 -0.02 8.21 16 37 H 0.30 13.26 8.29 -92.71 -0.77 12.49 16 38 H 0.06 1.55 7.65 -2.39 -0.02 1.53 16 39 H 0.07 1.56 7.67 -2.39 -0.02 1.54 16 40 H 0.11 2.61 8.14 -2.39 -0.02 2.60 16 41 H 0.15 4.13 5.87 -2.91 -0.02 4.11 16 Total: -1.00 -70.21 360.26 4.86 -65.35 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 1.07 Total: 27.12 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 6.31 Total: 1.79 kcal Atomic # 7 Polarization: -92.57 SS G_CDS: -3.48 Total: -96.05 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -1.07 Total: -36.54 kcal Atomic # 14 Polarization: 36.30 SS G_CDS: 2.03 Total: 38.33 kcal Total: -70.21 4.86 -65.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244530590.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.329 kcal (2) G-P(sol) polarization free energy of solvation -70.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds