Wall clock time and date at job start Tue Mar 31 2020 15:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47054 * 2 1 4 4 C 1.53001 * 109.47054 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47112 * 179.97438 * 4 3 2 6 6 C 1.46498 * 120.00106 * 269.99774 * 5 4 3 7 7 C 1.50697 * 109.47318 * 270.00326 * 6 5 4 8 8 H 1.08000 * 120.00235 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00095 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00327 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00220 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46875 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47237 * 119.99879 * 11 9 7 14 14 H 1.48497 * 109.47222 * 239.99983 * 11 9 7 15 15 C 1.34779 * 119.99744 * 89.99994 * 5 4 3 16 16 S 1.71202 * 119.99680 * 179.97438 * 15 5 4 17 17 N 1.34773 * 120.00233 * 359.97438 * 15 5 4 18 18 C 1.40165 * 120.00068 * 185.13234 * 17 15 5 19 19 C 1.38976 * 120.08647 * 88.66747 * 18 17 15 20 20 F 1.35102 * 120.04476 * 359.70730 * 19 18 17 21 21 C 1.38339 * 119.91598 * 179.97438 * 19 18 17 22 22 C 1.38270 * 120.08266 * 0.03067 * 21 19 18 23 23 C 1.38260 * 120.17240 * 359.94756 * 22 21 19 24 24 C 1.38343 * 120.08666 * 0.05081 * 23 22 21 25 25 F 1.35102 * 120.04266 * 179.97438 * 24 23 22 26 26 H 1.09002 * 109.47077 * 300.00527 * 1 2 3 27 27 H 1.08999 * 109.46926 * 60.00052 * 1 2 3 28 28 H 1.09002 * 109.47140 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47409 * 239.99703 * 2 1 3 30 30 H 1.09000 * 109.47104 * 119.99432 * 2 1 3 31 31 H 1.09002 * 109.47609 * 59.99799 * 3 2 1 32 32 H 1.08999 * 109.47211 * 299.99773 * 3 2 1 33 33 H 1.08995 * 109.47409 * 59.99703 * 4 3 2 34 34 H 1.09000 * 109.47104 * 299.99432 * 4 3 2 35 35 H 1.09006 * 109.47149 * 30.00288 * 6 5 4 36 36 H 1.08999 * 109.47183 * 149.99606 * 6 5 4 37 37 H 0.96996 * 120.00923 * 180.02562 * 10 9 7 38 38 H 0.96998 * 119.99766 * 5.13701 * 17 15 5 39 39 H 1.07999 * 119.95610 * 179.97438 * 21 19 18 40 40 H 1.07996 * 119.91280 * 179.97438 * 22 21 19 41 41 H 1.07999 * 119.95958 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.3020 3.5139 -1.2703 7 6 5.7251 3.2770 -1.7058 8 1 6.3824 2.6730 -1.0980 9 6 6.1882 3.8321 -2.8798 10 7 5.3880 4.5680 -3.6199 11 14 7.9524 3.5390 -3.4195 12 1 8.6401 2.6830 -2.4196 13 1 7.9598 2.8601 -4.7401 14 1 8.6596 4.8402 -3.5278 15 6 4.2834 3.4594 1.1657 16 16 4.8547 5.0733 1.1650 17 7 4.0588 2.8246 2.3331 18 6 4.1892 3.5179 3.5443 19 6 3.1010 4.1975 4.0786 20 9 1.9168 4.1959 3.4284 21 6 3.2335 4.8802 5.2745 22 6 4.4467 4.8876 5.9377 23 6 5.5314 4.2123 5.4096 24 6 5.4069 3.5272 4.2141 25 9 6.4676 2.8681 3.6986 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9288 -0.8908 34 1 3.9337 0.9286 0.8892 35 1 3.6209 3.1296 -2.0296 36 1 4.1350 4.5832 -1.1402 37 1 5.7136 4.9583 -4.4460 38 1 3.8070 1.8878 2.3352 39 1 2.3884 5.4089 5.6901 40 1 4.5471 5.4218 6.8709 41 1 6.4774 4.2200 5.9306 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247063429.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:07 Heat of formation + Delta-G solvation = -46.466906 kcal Electronic energy + Delta-G solvation = -26101.111964 eV Core-core repulsion = 22164.360056 eV Total energy + Delta-G solvation = -3936.751908 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.112 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -48.98770 -48.92119 -39.71338 -38.45092 -35.78274 -34.60058 -32.58178 -30.41829 -29.91708 -29.47694 -27.07120 -24.69842 -23.64374 -22.96751 -22.40948 -21.45135 -20.66267 -18.58957 -17.95804 -17.50461 -17.33243 -16.49271 -15.85448 -15.69923 -15.63891 -15.25792 -15.22944 -14.76412 -14.49088 -14.45204 -14.36469 -13.76462 -13.33445 -12.94314 -12.83703 -12.54596 -12.39888 -12.04225 -11.94394 -11.78505 -11.49446 -11.27611 -11.22165 -11.15028 -10.87823 -10.70309 -10.62749 -10.25653 -10.12427 -9.71408 -9.07039 -8.81914 -8.46705 -8.40502 -6.95259 -6.43285 -6.04483 -4.08017 0.78791 0.90968 2.06138 2.59675 3.13267 3.29557 3.31997 3.40888 3.44223 3.69008 3.82175 4.34020 4.46167 4.57684 4.73656 4.79593 4.84313 4.98474 5.00812 5.11436 5.30869 5.33431 5.48777 5.55230 5.70133 5.71181 5.71706 5.74551 5.87113 5.87972 6.01869 6.05624 6.14982 6.24744 6.28992 6.45258 6.82556 7.07514 7.42759 7.52814 7.89838 7.92520 8.14698 8.90657 9.54841 11.04219 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.009642 B = 0.005108 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.142355 B = 5479.969433 C = 7326.932196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.138 4.138 4 C 0.092 3.908 5 N -0.532 5.532 6 C 0.237 3.763 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.068 3.932 10 N -0.890 5.890 11 Si 0.899 3.101 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.281 1.281 15 C 0.563 3.437 16 S -0.632 6.632 17 N -0.663 5.663 18 C 0.092 3.908 19 C 0.147 3.853 20 F -0.124 7.124 21 C -0.163 4.163 22 C -0.056 4.056 23 C -0.162 4.162 24 C 0.152 3.848 25 F -0.121 7.121 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.039 0.961 36 H 0.079 0.921 37 H 0.263 0.737 38 H 0.399 0.601 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.962 -8.064 17.976 21.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.177 4.177 4 C -0.035 4.035 5 N -0.234 5.234 6 C 0.119 3.881 7 C -0.557 4.557 8 H 0.075 0.925 9 C -0.135 4.135 10 N -0.529 5.529 11 Si 0.727 3.273 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.207 1.207 15 C 0.207 3.793 16 S -0.502 6.502 17 N -0.299 5.299 18 C -0.004 4.004 19 C 0.125 3.875 20 F -0.102 7.102 21 C -0.182 4.182 22 C -0.074 4.074 23 C -0.182 4.182 24 C 0.130 3.870 25 F -0.099 7.099 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.119 0.881 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.240 0.760 39 H 0.162 0.838 40 H 0.162 0.838 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.616 -6.956 17.585 20.387 hybrid contribution 0.631 -1.512 -0.733 1.795 sum -6.985 -8.468 16.852 20.112 Atomic orbital electron populations 1.21751 0.95657 1.01416 1.02020 1.21449 0.96095 0.96141 1.02156 1.22061 0.94820 0.97414 1.03405 1.21867 0.94276 0.83762 1.03566 1.47892 1.56656 1.12422 1.06474 1.20005 0.97387 0.95711 0.74981 1.21155 0.96008 1.32350 1.06209 0.92529 1.24815 0.97741 0.94656 0.96250 1.69925 1.35581 1.33108 1.14270 0.86422 0.84663 0.78160 0.78056 1.19882 1.21114 1.20701 1.22316 0.82241 0.93980 0.80788 1.93163 1.63953 0.99050 1.93985 1.42037 1.72806 1.13134 1.01899 1.17016 0.92730 1.02570 0.88064 1.17585 0.80973 0.97265 0.91643 1.91533 1.43404 1.94507 1.80762 1.21072 1.00130 1.02259 0.94761 1.20841 0.90853 0.96306 0.99442 1.21098 1.01256 1.00357 0.95465 1.17620 0.82562 0.94008 0.92780 1.91557 1.53850 1.77906 1.86586 0.92854 0.92512 0.92813 0.91465 0.92169 0.91932 0.90530 0.88149 0.91857 0.94305 0.90333 0.92697 0.76022 0.83761 0.83778 0.83732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 37.16 0.37 -1.04 16 2 C -0.12 -1.21 5.93 -26.73 -0.16 -1.37 16 3 C -0.14 -1.78 5.54 -26.73 -0.15 -1.93 16 4 C 0.09 1.39 5.22 -4.04 -0.02 1.37 16 5 N -0.53 -10.91 2.46 -177.08 -0.43 -11.34 16 6 C 0.24 6.02 4.92 -5.20 -0.03 6.00 16 7 C -0.52 -14.45 9.39 -34.44 -0.32 -14.77 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.07 1.93 5.46 -17.82 -0.10 1.84 16 10 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 11 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 12 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 15 C 0.56 11.77 7.67 -86.92 -0.67 11.11 16 16 S -0.63 -16.13 27.36 -107.50 -2.94 -19.07 16 17 N -0.66 -10.88 4.80 -11.29 -0.05 -10.93 16 18 C 0.09 1.41 4.61 -83.50 -0.38 1.02 16 19 C 0.15 2.04 7.31 -39.27 -0.29 1.75 16 20 F -0.12 -1.87 17.08 2.25 0.04 -1.83 16 21 C -0.16 -1.69 10.02 -39.53 -0.40 -2.08 16 22 C -0.06 -0.49 10.04 -39.56 -0.40 -0.89 16 23 C -0.16 -1.74 10.02 -39.53 -0.40 -2.14 16 24 C 0.15 2.19 7.31 -39.27 -0.29 1.91 16 25 F -0.12 -1.98 17.08 2.25 0.04 -1.95 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.10 1.57 8.07 -51.93 -0.42 1.15 16 34 H 0.06 0.81 6.30 -51.93 -0.33 0.48 16 35 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 36 H 0.08 2.28 6.58 -51.93 -0.34 1.94 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.40 5.34 6.52 -40.82 -0.27 5.07 16 39 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 369.09 15.07 5.56 5.56 Total: -1.00 -34.79 369.09 -10.84 -45.63 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -5.55 Total: 1.53 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -3.22 Total: 0.78 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.25 Total: -47.83 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.08 Total: -3.78 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 16 Polarization: -16.13 SS G_CDS: -2.94 Total: -19.07 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.79 -10.84 -45.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247063429.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.836 kcal (2) G-P(sol) polarization free energy of solvation -34.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds