Wall clock time and date at job start Tue Mar 31 2020 15:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47054 * 2 1 4 4 C 1.53001 * 109.47054 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47112 * 179.97438 * 4 3 2 6 6 C 1.46498 * 120.00106 * 269.99774 * 5 4 3 7 7 C 1.50697 * 109.47318 * 270.00326 * 6 5 4 8 8 H 1.08000 * 120.00235 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00095 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00327 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00220 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46875 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47237 * 119.99879 * 11 9 7 14 14 H 1.48497 * 109.47222 * 239.99983 * 11 9 7 15 15 C 1.34779 * 119.99744 * 89.99994 * 5 4 3 16 16 S 1.71202 * 119.99680 * 179.97438 * 15 5 4 17 17 N 1.34773 * 120.00233 * 359.97438 * 15 5 4 18 18 C 1.40165 * 120.00068 * 185.13234 * 17 15 5 19 19 C 1.38976 * 120.08647 * 88.66747 * 18 17 15 20 20 F 1.35102 * 120.04476 * 359.70730 * 19 18 17 21 21 C 1.38339 * 119.91598 * 179.97438 * 19 18 17 22 22 C 1.38270 * 120.08266 * 0.03067 * 21 19 18 23 23 C 1.38260 * 120.17240 * 359.94756 * 22 21 19 24 24 C 1.38343 * 120.08666 * 0.05081 * 23 22 21 25 25 F 1.35102 * 120.04266 * 179.97438 * 24 23 22 26 26 H 1.09002 * 109.47077 * 300.00527 * 1 2 3 27 27 H 1.08999 * 109.46926 * 60.00052 * 1 2 3 28 28 H 1.09002 * 109.47140 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47409 * 239.99703 * 2 1 3 30 30 H 1.09000 * 109.47104 * 119.99432 * 2 1 3 31 31 H 1.09002 * 109.47609 * 59.99799 * 3 2 1 32 32 H 1.08999 * 109.47211 * 299.99773 * 3 2 1 33 33 H 1.08995 * 109.47409 * 59.99703 * 4 3 2 34 34 H 1.09000 * 109.47104 * 299.99432 * 4 3 2 35 35 H 1.09006 * 109.47149 * 30.00288 * 6 5 4 36 36 H 1.08999 * 109.47183 * 149.99606 * 6 5 4 37 37 H 0.96996 * 120.00923 * 180.02562 * 10 9 7 38 38 H 0.96998 * 119.99766 * 5.13701 * 17 15 5 39 39 H 1.07999 * 119.95610 * 179.97438 * 21 19 18 40 40 H 1.07996 * 119.91280 * 179.97438 * 22 21 19 41 41 H 1.07999 * 119.95958 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.3020 3.5139 -1.2703 7 6 5.7251 3.2770 -1.7058 8 1 6.3824 2.6730 -1.0980 9 6 6.1882 3.8321 -2.8798 10 7 5.3880 4.5680 -3.6199 11 14 7.9524 3.5390 -3.4195 12 1 8.6401 2.6830 -2.4196 13 1 7.9598 2.8601 -4.7401 14 1 8.6596 4.8402 -3.5278 15 6 4.2834 3.4594 1.1657 16 16 4.8547 5.0733 1.1650 17 7 4.0588 2.8246 2.3331 18 6 4.1892 3.5179 3.5443 19 6 3.1010 4.1975 4.0786 20 9 1.9168 4.1959 3.4284 21 6 3.2335 4.8802 5.2745 22 6 4.4467 4.8876 5.9377 23 6 5.5314 4.2123 5.4096 24 6 5.4069 3.5272 4.2141 25 9 6.4676 2.8681 3.6986 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9288 -0.8908 34 1 3.9337 0.9286 0.8892 35 1 3.6209 3.1296 -2.0296 36 1 4.1350 4.5832 -1.1402 37 1 5.7136 4.9583 -4.4460 38 1 3.8070 1.8878 2.3352 39 1 2.3884 5.4089 5.6901 40 1 4.5471 5.4218 6.8709 41 1 6.4774 4.2200 5.9306 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247063429.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:59 Heat of formation + Delta-G solvation = -65.417528 kcal Electronic energy + Delta-G solvation = -26101.933725 eV Core-core repulsion = 22164.360056 eV Total energy + Delta-G solvation = -3937.573669 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.112 amu Computer time = 6.92 seconds Orbital eigenvalues (eV) -50.08664 -50.06267 -41.09226 -39.63542 -37.01534 -35.90708 -34.57976 -31.33827 -31.10313 -30.80142 -28.86461 -26.00571 -25.35770 -23.94205 -23.67781 -22.61710 -21.99068 -19.88081 -19.25236 -18.84982 -18.63642 -18.37344 -17.20112 -16.91472 -16.69624 -16.43284 -16.36998 -16.34322 -15.91601 -15.84128 -15.41142 -15.24249 -14.52535 -14.25915 -14.09810 -13.77489 -13.58504 -13.46579 -13.07518 -12.99150 -12.82534 -12.78358 -12.68560 -12.39530 -12.36316 -12.20964 -12.18022 -11.85973 -11.70772 -11.55752 -10.64154 -10.12557 -10.03130 -9.77037 -8.88784 -8.40573 -8.22529 -6.33869 -0.19887 -0.02699 0.37718 0.97311 1.34672 1.39377 1.48346 1.59859 2.19420 2.33279 2.40165 2.81325 3.10465 3.39403 3.63804 3.76168 3.79641 3.83145 4.03254 4.17210 4.20371 4.25926 4.37102 4.60586 4.64153 4.73463 4.75023 4.88813 4.96627 4.97958 5.02518 5.12586 5.14392 5.18412 5.19322 5.28339 5.40298 5.49838 5.60172 5.73703 5.91179 5.98578 6.27552 6.70117 7.32618 8.85734 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.009642 B = 0.005108 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.142355 B = 5479.969433 C = 7326.932196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.127 4.127 4 C 0.086 3.914 5 N -0.534 5.534 6 C 0.257 3.743 7 C -0.526 4.526 8 H 0.047 0.953 9 C 0.019 3.981 10 N -0.922 5.922 11 Si 0.962 3.038 12 H -0.272 1.272 13 H -0.267 1.267 14 H -0.285 1.285 15 C 0.586 3.414 16 S -0.733 6.733 17 N -0.638 5.638 18 C 0.055 3.945 19 C 0.124 3.876 20 F -0.138 7.138 21 C -0.152 4.152 22 C -0.034 4.034 23 C -0.154 4.154 24 C 0.123 3.877 25 F -0.141 7.141 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.034 0.966 36 H 0.038 0.962 37 H 0.267 0.733 38 H 0.416 0.584 39 H 0.176 0.824 40 H 0.195 0.805 41 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.010 -9.535 20.567 24.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.166 4.166 4 C -0.038 4.038 5 N -0.236 5.236 6 C 0.137 3.863 7 C -0.565 4.565 8 H 0.065 0.935 9 C -0.181 4.181 10 N -0.562 5.562 11 Si 0.787 3.213 12 H -0.196 1.196 13 H -0.192 1.192 14 H -0.211 1.211 15 C 0.224 3.776 16 S -0.604 6.604 17 N -0.272 5.272 18 C -0.040 4.040 19 C 0.103 3.897 20 F -0.117 7.117 21 C -0.171 4.171 22 C -0.052 4.052 23 C -0.173 4.173 24 C 0.102 3.898 25 F -0.119 7.119 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.259 0.741 39 H 0.193 0.807 40 H 0.212 0.788 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -7.695 -8.498 20.226 23.249 hybrid contribution 0.570 -1.090 -1.377 1.847 sum -7.125 -9.589 18.849 22.316 Atomic orbital electron populations 1.21749 0.94938 1.02452 1.01670 1.21435 0.96643 0.93756 1.03367 1.21973 0.92844 0.99567 1.02257 1.22234 0.95847 0.80701 1.05019 1.47730 1.56564 1.14238 1.05072 1.19397 0.96304 0.93872 0.76763 1.21321 0.96873 1.32120 1.06174 0.93502 1.25626 1.01695 0.94378 0.96397 1.70028 1.37416 1.33951 1.14756 0.85449 0.79684 0.77853 0.78282 1.19642 1.19237 1.21070 1.21773 0.81310 0.92336 0.82144 1.93257 1.68335 1.03876 1.94918 1.41835 1.70503 1.13686 1.01182 1.17375 0.94152 1.04813 0.87645 1.17927 0.80244 0.98414 0.93094 1.91493 1.44059 1.94742 1.81356 1.21554 1.01906 1.00553 0.93092 1.21452 0.89089 0.94348 1.00286 1.21552 1.03172 0.98650 0.93910 1.18015 0.81778 0.95547 0.94446 1.91500 1.54657 1.78595 1.87170 0.92766 0.93393 0.91063 0.91103 0.90098 0.92189 0.92637 0.88274 0.88791 0.94775 0.94371 0.92425 0.74109 0.80675 0.78765 0.80978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.91 71.98 0.71 -1.82 16 2 C -0.11 -2.07 5.93 30.59 0.18 -1.88 16 3 C -0.13 -3.23 5.54 30.59 0.17 -3.07 16 4 C 0.09 2.58 5.22 86.38 0.45 3.04 16 5 N -0.53 -22.56 2.46 -714.17 -1.75 -24.31 16 6 C 0.26 13.65 4.92 85.63 0.42 14.07 16 7 C -0.53 -30.18 9.39 25.60 0.24 -29.94 16 8 H 0.05 2.73 7.81 -2.91 -0.02 2.70 16 9 C 0.02 1.09 5.46 84.65 0.46 1.55 16 10 N -0.92 -55.88 13.29 21.45 0.28 -55.60 16 11 Si 0.96 46.11 29.54 68.60 2.03 48.14 16 12 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 14 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 15 C 0.59 25.24 7.67 179.05 1.37 26.61 16 16 S -0.73 -39.28 27.36 -56.49 -1.55 -40.83 16 17 N -0.64 -21.02 4.80 -189.62 -0.91 -21.93 16 18 C 0.05 1.67 4.61 38.16 0.18 1.84 16 19 C 0.12 3.34 7.31 22.47 0.16 3.50 16 20 F -0.14 -4.16 17.08 44.97 0.77 -3.39 16 21 C -0.15 -2.68 10.02 22.30 0.22 -2.46 16 22 C -0.03 -0.45 10.04 22.28 0.22 -0.23 16 23 C -0.15 -2.86 10.02 22.30 0.22 -2.64 16 24 C 0.12 3.48 7.31 22.47 0.16 3.64 16 25 F -0.14 -4.65 17.08 44.97 0.77 -3.88 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.05 0.88 8.14 -2.39 -0.02 0.87 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.10 3.05 8.07 -2.39 -0.02 3.03 16 34 H 0.09 2.23 6.30 -2.39 -0.02 2.21 16 35 H 0.03 1.83 8.07 -2.38 -0.02 1.81 16 36 H 0.04 2.36 6.58 -2.39 -0.02 2.34 16 37 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 38 H 0.42 10.78 6.52 -92.71 -0.60 10.18 16 39 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.20 0.71 8.06 -2.91 -0.02 0.69 16 41 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -81.47 369.09 5.27 -76.20 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.45 Total: 13.39 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 5.19 Total: 12.21 kcal Atomic # 7 Polarization: -99.45 SS G_CDS: -2.38 Total: -101.83 kcal Atomic # 9 Polarization: -8.81 SS G_CDS: 1.54 Total: -7.28 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Atomic # 16 Polarization: -39.28 SS G_CDS: -1.55 Total: -40.83 kcal Total: -81.47 5.27 -76.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247063429.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.781 kcal (2) G-P(sol) polarization free energy of solvation -81.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.92 seconds