Wall clock time and date at job start Tue Mar 31 2020 16:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47490 * 2 1 4 4 C 1.37144 * 126.48429 * 265.34765 * 3 2 1 5 5 C 1.47271 * 125.17416 * 0.02562 * 4 3 2 6 6 C 1.39423 * 120.36171 * 310.34379 * 5 4 3 7 7 C 1.37991 * 119.96554 * 179.72123 * 6 5 4 8 8 C 1.38986 * 120.69937 * 0.57881 * 7 6 5 9 9 C 1.36403 * 120.73735 * 359.69614 * 8 7 6 10 10 C 1.40770 * 120.00996 * 0.02562 * 9 8 7 11 11 C 1.40739 * 120.34883 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00271 * 150.31236 * 11 10 9 13 13 C 1.40141 * 119.99896 * 330.31320 * 11 10 9 14 14 N 1.30719 * 119.99988 * 349.10134 * 13 11 10 15 15 Si 1.86799 * 120.00080 * 169.10877 * 13 11 10 16 16 H 1.48494 * 109.47637 * 59.99572 * 15 13 11 17 17 H 1.48495 * 109.47258 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46815 * 299.99689 * 15 13 11 19 19 N 1.31328 * 109.65925 * 179.97438 * 4 3 2 20 20 C 1.34753 * 109.78017 * 359.97438 * 19 4 3 21 21 C 1.40110 * 133.26898 * 180.02562 * 20 19 4 22 22 C 1.36492 * 119.95646 * 180.28291 * 21 20 19 23 23 C 1.39041 * 120.69150 * 359.47460 * 22 21 20 24 24 F 1.35099 * 119.79751 * 180.26950 * 23 22 21 25 25 C 1.38285 * 120.41234 * 0.50954 * 23 22 21 26 26 F 1.35095 * 120.16716 * 179.74231 * 25 23 22 27 27 C 1.38155 * 126.49275 * 85.33841 * 3 2 1 28 28 H 1.08994 * 109.47327 * 300.00618 * 1 2 3 29 29 H 1.09001 * 109.46620 * 60.00215 * 1 2 3 30 30 H 1.09000 * 109.47292 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47213 * 239.99511 * 2 1 3 32 32 H 1.09006 * 109.47064 * 119.99817 * 2 1 3 33 33 H 1.08006 * 120.01577 * 359.97438 * 6 5 4 34 34 H 1.07998 * 119.64813 * 180.27315 * 7 6 5 35 35 H 1.08002 * 119.62757 * 179.71889 * 8 7 6 36 36 H 1.08006 * 119.99446 * 180.02562 * 9 8 7 37 37 H 0.97008 * 120.00237 * 179.97438 * 14 13 11 38 38 H 1.08004 * 120.02240 * 0.02562 * 21 20 19 39 39 H 1.07996 * 119.65415 * 179.72331 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3746 2.1201 -1.0990 5 6 2.3265 1.6456 -2.4924 6 6 2.8996 0.4232 -2.8407 7 6 2.8447 -0.0162 -4.1477 8 6 2.2326 0.7534 -5.1299 9 6 1.6677 1.9562 -4.8220 10 6 1.7011 2.4312 -3.4973 11 6 1.1200 3.6710 -3.1715 12 1 0.7128 3.8338 -2.1846 13 6 1.0699 4.6941 -4.1279 14 7 1.7439 4.5809 -5.2422 15 14 0.0402 6.2200 -3.8101 16 1 0.5275 6.8994 -2.5830 17 1 0.1556 7.1446 -4.9663 18 1 -1.3809 5.8290 -3.6282 19 7 2.7641 3.3157 -0.7202 20 6 2.6835 3.4179 0.6210 21 6 2.9691 4.4501 1.5244 22 6 2.7894 4.2534 2.8631 23 6 2.3136 3.0388 3.3443 24 9 2.1374 2.8655 4.6725 25 6 2.0244 2.0052 2.4723 26 9 1.5673 0.8254 2.9457 27 6 2.2072 2.1858 1.1070 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 3.3826 -0.1813 -2.0872 34 1 3.2864 -0.9659 -4.4110 35 1 2.2035 0.3948 -6.1482 36 1 1.1948 2.5442 -5.5947 37 1 1.7089 5.2890 -5.9043 38 1 3.3351 5.3994 1.1621 39 1 3.0153 5.0508 3.5554 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251426750.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:41 Heat of formation + Delta-G solvation = -1.603952 kcal Electronic energy + Delta-G solvation = -27638.992429 eV Core-core repulsion = 23568.741973 eV Total energy + Delta-G solvation = -4070.250456 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.108 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -49.25904 -48.33108 -41.67953 -37.85016 -36.69638 -34.51900 -33.84322 -31.15225 -30.58510 -29.81352 -28.92525 -27.98415 -25.57172 -23.78282 -23.16891 -22.16591 -21.12137 -21.03277 -19.43656 -17.76902 -17.51106 -17.28668 -17.08708 -16.27274 -15.60347 -15.45916 -15.27714 -14.88593 -14.72774 -14.57281 -14.37331 -14.20188 -13.65399 -13.48188 -13.05044 -12.81371 -12.76501 -12.39869 -12.33800 -11.95600 -11.77152 -11.49197 -11.38551 -11.25312 -11.07865 -10.98578 -10.81634 -10.59841 -10.00700 -9.85271 -9.75497 -9.42499 -9.36045 -8.29467 -7.85768 -7.62585 -7.37712 -6.93438 -4.55997 0.87381 1.47055 2.31594 2.68685 2.83360 2.99653 3.03693 3.12839 3.29084 3.83047 4.00665 4.02396 4.44199 4.48436 4.62519 4.84484 4.91408 4.99922 5.17610 5.36087 5.39563 5.50486 5.53108 5.76441 5.79301 5.92135 5.97854 6.00764 6.18225 6.23851 6.28498 6.43738 6.58830 6.70725 6.83944 6.93511 6.99308 7.11061 7.27782 7.42920 7.61038 7.80922 7.84442 8.01226 8.38341 8.49766 8.62745 8.70123 9.97721 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.012258 B = 0.004975 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.703907 B = 5626.473685 C = 7147.338323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.103 3.897 3 N -0.485 5.485 4 C 0.407 3.593 5 C -0.189 4.189 6 C -0.059 4.059 7 C -0.241 4.241 8 C -0.092 4.092 9 C -0.148 4.148 10 C 0.149 3.851 11 C -0.416 4.416 12 H 0.080 0.920 13 C 0.077 3.923 14 N -0.781 5.781 15 Si 0.912 3.088 16 H -0.260 1.260 17 H -0.276 1.276 18 H -0.263 1.263 19 N -0.475 5.475 20 C 0.081 3.919 21 C -0.052 4.052 22 C -0.140 4.140 23 C 0.055 3.945 24 F -0.135 7.135 25 C 0.078 3.922 26 F -0.136 7.136 27 C 0.014 3.986 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.124 0.876 37 H 0.286 0.714 38 H 0.143 0.857 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.834 -3.342 8.289 8.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.019 4.019 3 N -0.173 5.173 4 C 0.149 3.851 5 C -0.193 4.193 6 C -0.079 4.079 7 C -0.261 4.261 8 C -0.111 4.111 9 C -0.167 4.167 10 C 0.145 3.855 11 C -0.444 4.444 12 H 0.099 0.901 13 C -0.143 4.143 14 N -0.405 5.405 15 Si 0.736 3.264 16 H -0.184 1.184 17 H -0.201 1.201 18 H -0.188 1.188 19 N -0.192 5.192 20 C -0.042 4.042 21 C -0.071 4.071 22 C -0.161 4.161 23 C 0.033 3.967 24 F -0.114 7.114 25 C 0.055 3.945 26 F -0.115 7.115 27 C -0.098 4.098 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.122 0.878 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.142 0.858 37 H 0.097 0.903 38 H 0.160 0.840 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.573 -2.750 7.612 8.113 hybrid contribution -0.715 -0.262 1.009 1.264 sum -1.287 -3.012 8.621 9.222 Atomic orbital electron populations 1.22110 0.94271 1.02783 1.03236 1.21895 0.95903 0.79648 1.04414 1.45951 1.53665 1.12944 1.04753 1.21993 0.90370 0.84664 0.88074 1.17389 1.14948 1.00030 0.86982 1.20476 0.97642 0.94064 0.95683 1.20215 1.11408 1.01222 0.93224 1.20556 0.98124 0.95275 0.97193 1.21117 1.03248 0.95049 0.97255 1.17390 0.86920 0.91124 0.90099 1.19536 1.30585 0.95726 0.98588 0.90144 1.25970 0.93873 1.00588 0.93860 1.69719 1.30453 1.33469 1.06862 0.86272 0.80669 0.80153 0.79326 1.18421 1.20063 1.18765 1.70911 1.23593 1.17006 1.07688 1.19162 1.01458 0.91915 0.91710 1.19936 0.98923 0.98043 0.90243 1.20346 1.03957 0.95768 0.96059 1.17048 1.08017 0.94698 0.76947 1.91470 1.93699 1.95926 1.30255 1.16293 1.07076 0.82641 0.88473 1.91445 1.86945 1.44346 1.88753 1.18537 1.08907 0.94994 0.87392 0.92449 0.91093 0.90793 0.87822 0.89912 0.89258 0.88884 0.88956 0.85838 0.90308 0.83951 0.83803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.24 37.16 0.38 -1.94 16 2 C 0.10 1.56 6.43 -4.05 -0.03 1.54 16 3 N -0.48 -9.11 2.84 -111.69 -0.32 -9.43 16 4 C 0.41 8.88 6.42 -154.38 -0.99 7.89 16 5 C -0.19 -4.29 5.65 -104.32 -0.59 -4.88 16 6 C -0.06 -1.20 8.33 -39.23 -0.33 -1.52 16 7 C -0.24 -4.79 10.03 -39.39 -0.40 -5.19 16 8 C -0.09 -1.94 9.96 -39.97 -0.40 -2.34 16 9 C -0.15 -3.46 8.59 -39.29 -0.34 -3.80 16 10 C 0.15 3.67 5.56 -106.53 -0.59 3.08 16 11 C -0.42 -10.41 7.98 -37.92 -0.30 -10.71 16 12 H 0.08 2.06 7.08 -52.49 -0.37 1.69 16 13 C 0.08 1.83 5.24 -17.31 -0.09 1.74 16 14 N -0.78 -18.82 10.91 55.56 0.61 -18.21 16 15 Si 0.91 18.19 29.57 -169.99 -5.03 13.16 16 16 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 17 H -0.28 -5.29 7.11 56.52 0.40 -4.88 16 18 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 19 N -0.48 -10.79 10.28 -8.86 -0.09 -10.88 16 20 C 0.08 1.59 7.20 -84.93 -0.61 0.98 16 21 C -0.05 -0.81 10.05 -39.51 -0.40 -1.21 16 22 C -0.14 -1.91 9.94 -39.91 -0.40 -2.31 16 23 C 0.05 0.84 7.30 -39.27 -0.29 0.56 16 24 F -0.13 -2.03 17.17 2.25 0.04 -1.99 16 25 C 0.08 1.33 7.32 -39.31 -0.29 1.04 16 26 F -0.14 -2.24 16.16 2.25 0.04 -2.21 16 27 C 0.01 0.25 6.88 -83.81 -0.58 -0.32 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.10 1.52 5.41 -51.93 -0.28 1.24 16 32 H 0.08 1.13 7.42 -51.93 -0.39 0.74 16 33 H 0.09 1.60 7.08 -52.48 -0.37 1.23 16 34 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.12 2.97 6.29 -52.48 -0.33 2.64 16 37 H 0.29 6.28 8.29 -40.82 -0.34 5.94 16 38 H 0.14 1.95 8.06 -52.48 -0.42 1.53 16 39 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 339.61 15.07 5.12 5.12 Total: -1.00 -26.66 339.61 -9.70 -36.36 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -3.83 Total: 5.48 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -6.23 Total: -17.41 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.20 Total: -38.52 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.08 Total: -4.20 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -26.66 -9.70 -36.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251426750.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.758 kcal (2) G-P(sol) polarization free energy of solvation -26.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.64 seconds