Wall clock time and date at job start Tue Mar 31 2020 15:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47181 * 2 1 4 4 C 1.50696 * 109.47391 * 239.99367 * 2 1 3 5 5 H 1.08004 * 120.00332 * 240.00475 * 4 2 1 6 6 C 1.37880 * 119.99857 * 60.00082 * 4 2 1 7 7 N 1.31515 * 119.99888 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99895 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47350 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46833 * 120.00589 * 8 6 4 11 11 H 1.48506 * 109.46889 * 240.00142 * 8 6 4 12 12 C 1.53005 * 109.46451 * 119.99598 * 2 1 3 13 13 N 1.46496 * 109.47401 * 299.99639 * 12 2 1 14 14 C 1.34773 * 119.99973 * 179.97438 * 13 12 2 15 15 O 1.21588 * 120.00151 * 359.73121 * 14 13 12 16 16 N 1.34784 * 119.99935 * 180.02562 * 14 13 12 17 17 N 1.40104 * 119.99625 * 359.72482 * 16 14 13 18 18 C 1.39165 * 119.99601 * 179.97438 * 17 16 14 19 19 N 1.32591 * 120.11902 * 359.72633 * 18 17 16 20 20 N 1.28300 * 122.28633 * 179.73646 * 19 18 17 21 21 C 1.31681 * 122.38649 * 0.55484 * 20 19 18 22 22 C 1.39554 * 119.88835 * 359.72550 * 21 20 19 23 23 N 1.39327 * 121.06573 * 179.97438 * 22 21 20 24 24 C 1.39228 * 120.11483 * 180.02562 * 18 17 16 25 25 Cl 1.73594 * 121.10242 * 359.96178 * 24 18 17 26 26 H 1.09002 * 109.47522 * 300.00912 * 1 2 3 27 27 H 1.09001 * 109.46796 * 60.00202 * 1 2 3 28 28 H 1.08993 * 109.47323 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46813 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.46840 * 299.99162 * 3 2 1 31 31 H 1.08992 * 109.47827 * 59.99924 * 3 2 1 32 32 H 0.96995 * 119.99958 * 179.97438 * 7 6 4 33 33 H 1.09007 * 109.46761 * 179.97438 * 12 2 1 34 34 H 1.08997 * 109.46989 * 60.00554 * 12 2 1 35 35 H 0.97004 * 120.00009 * 0.02562 * 13 12 2 36 36 H 0.96999 * 120.00044 * 179.72863 * 16 14 13 37 37 H 0.96999 * 120.00331 * 0.02562 * 17 16 14 38 38 H 1.08000 * 120.05782 * 179.74601 * 21 20 19 39 39 H 0.97005 * 120.00088 * 180.02562 * 23 22 21 40 40 H 0.96997 * 119.99960 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5887 -1.1312 6 6 1.6994 -0.2396 -2.4827 7 7 0.9437 0.8300 -2.6034 8 14 2.3227 -1.1199 -4.0078 9 1 3.1476 -2.2866 -3.6035 10 1 1.1680 -1.5869 -4.8164 11 1 3.1475 -0.1861 -4.8159 12 6 2.0399 -0.7212 1.2494 13 7 1.5516 -0.0305 2.4455 14 6 1.8766 -0.4912 3.6696 15 8 2.5711 -1.4830 3.7812 16 7 1.4269 0.1440 4.7700 17 7 0.6264 1.2865 4.6413 18 6 0.1616 1.9420 5.7775 19 7 0.4706 1.4842 6.9829 20 7 0.0690 2.0583 8.0577 21 6 -0.6870 3.1364 8.0413 22 6 -1.0736 3.6962 6.8229 23 7 -1.8735 4.8360 6.7769 24 6 -0.6345 3.0773 5.6525 25 17 -1.0657 3.7027 4.0915 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9562 -0.8901 31 1 1.6768 1.9564 0.8899 32 1 0.7097 1.1615 -3.4844 33 1 3.1299 -0.7216 1.2492 34 1 1.6766 -1.7489 1.2493 35 1 0.9937 0.7580 2.3564 36 1 1.6576 -0.1899 5.6510 37 1 0.3954 1.6202 3.7603 38 1 -1.0071 3.5868 8.9693 39 1 -2.1334 5.2120 5.9213 40 1 -2.1704 5.2537 7.6005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348537262.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:25 Heat of formation + Delta-G solvation = 63.140693 kcal Electronic energy + Delta-G solvation = -25609.431806 eV Core-core repulsion = 21715.229057 eV Total energy + Delta-G solvation = -3894.202749 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.116 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.31266 -39.88010 -37.28149 -37.10343 -36.43332 -35.83391 -33.40585 -32.71824 -30.78275 -30.60710 -29.12287 -25.79064 -25.73585 -25.05464 -24.67018 -23.51777 -21.07365 -19.52343 -19.23090 -18.62268 -18.12044 -17.27046 -16.64206 -15.97456 -15.86332 -15.77271 -15.53049 -15.17380 -14.74818 -14.62876 -14.14720 -13.72274 -13.29804 -12.94825 -12.90285 -12.62712 -12.25450 -12.05488 -11.78535 -11.45317 -11.26459 -11.20291 -10.92534 -10.69128 -10.45730 -10.29162 -10.11959 -10.05962 -9.97829 -9.70122 -9.39139 -8.84074 -8.69217 -8.60862 -8.40594 -7.82354 -6.06109 -4.15912 0.52509 0.88279 1.56162 1.73828 2.97289 3.16192 3.24805 3.25427 3.34310 3.39561 3.43307 3.99914 4.02784 4.25486 4.37842 4.75876 4.91375 5.21184 5.31749 5.61927 6.06637 6.17903 6.28706 6.42241 6.47466 6.70515 6.73875 6.78110 6.89850 6.90463 6.96686 7.12818 7.25528 7.31540 7.49746 7.66059 7.95294 8.06044 8.24669 8.34927 8.59432 8.74035 8.85324 9.50210 10.95516 Molecular weight = 328.12amu Principal moments of inertia in cm(-1) A = 0.019687 B = 0.002998 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.886030 B = 9337.590124 C =10568.402940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.505 4.505 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.146 3.854 13 N -0.730 5.730 14 C 0.706 3.294 15 O -0.574 6.574 16 N -0.530 5.530 17 N -0.502 5.502 18 C 0.401 3.599 19 N -0.335 5.335 20 N -0.156 5.156 21 C -0.062 4.062 22 C 0.270 3.730 23 N -0.840 5.840 24 C -0.205 4.205 25 Cl -0.037 7.037 26 H 0.002 0.998 27 H 0.086 0.914 28 H 0.029 0.971 29 H 0.028 0.972 30 H 0.087 0.913 31 H 0.002 0.998 32 H 0.259 0.741 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.387 0.613 36 H 0.441 0.559 37 H 0.434 0.566 38 H 0.175 0.825 39 H 0.409 0.591 40 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.210 11.700 18.092 23.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.543 4.543 5 H 0.078 0.922 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.024 3.976 13 N -0.386 5.386 14 C 0.406 3.594 15 O -0.448 6.448 16 N -0.288 5.288 17 N -0.233 5.233 18 C 0.158 3.842 19 N -0.192 5.192 20 N 0.004 4.996 21 C -0.239 4.239 22 C 0.149 3.851 23 N -0.379 5.379 24 C -0.255 4.255 25 Cl -0.009 7.009 26 H 0.021 0.979 27 H 0.105 0.895 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.105 0.895 31 H 0.021 0.979 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.223 0.777 36 H 0.287 0.713 37 H 0.280 0.720 38 H 0.192 0.808 39 H 0.240 0.760 40 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -6.861 9.770 18.480 22.001 hybrid contribution -1.113 1.606 -1.921 2.740 sum -7.975 11.376 16.559 21.615 Atomic orbital electron populations 1.21836 0.97764 0.99320 0.99893 1.18382 0.92795 0.92786 0.90550 1.21836 0.98772 0.98311 0.99895 1.21006 1.31456 1.12140 0.89722 0.92215 1.24878 0.94821 0.94915 0.98890 1.69805 1.36744 1.22765 1.23157 0.86502 0.78647 0.79768 0.82900 1.19695 1.21071 1.21066 1.21720 0.98259 0.95628 0.82011 1.45593 1.55320 1.32817 1.04916 1.15878 0.80631 0.82715 0.80207 1.91003 1.43245 1.26488 1.84087 1.44699 1.52361 1.21549 1.10185 1.43180 1.51377 1.22774 1.06002 1.19273 0.88708 0.87174 0.89081 1.73003 1.26293 1.27413 0.92483 1.72454 1.03382 1.04383 1.19346 1.23700 1.05063 0.98727 0.96426 1.18306 0.87784 0.86727 0.92296 1.42477 1.54735 1.28069 1.12627 1.20509 1.14373 1.02583 0.87994 1.98388 1.92194 1.86256 1.24091 0.97907 0.89486 0.95229 0.95233 0.89478 0.97908 0.93052 0.92398 0.92392 0.77737 0.71298 0.71971 0.80824 0.75989 0.75833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 2 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 3 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 4 C -0.50 -12.97 8.01 -34.44 -0.28 -13.25 16 5 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.15 9.35 55.43 0.52 -22.63 16 8 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16 9 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.15 3.07 4.50 -4.04 -0.02 3.05 16 13 N -0.73 -13.09 4.92 -65.22 -0.32 -13.41 16 14 C 0.71 12.76 8.68 -86.91 -0.75 12.00 16 15 O -0.57 -12.33 17.18 5.29 0.09 -12.24 16 16 N -0.53 -7.87 6.30 27.64 0.17 -7.69 16 17 N -0.50 -6.51 6.40 31.21 0.20 -6.31 16 18 C 0.40 4.92 7.68 -154.66 -1.19 3.74 16 19 N -0.34 -4.40 10.55 31.22 0.33 -4.07 16 20 N -0.16 -1.81 11.48 30.70 0.35 -1.45 16 21 C -0.06 -0.50 11.21 -17.13 -0.19 -0.69 16 22 C 0.27 2.08 6.83 -83.50 -0.57 1.51 16 23 N -0.84 -3.36 9.06 32.58 0.30 -3.06 16 24 C -0.21 -2.07 6.42 -38.75 -0.25 -2.32 16 25 Cl -0.04 -0.35 26.61 -51.86 -1.38 -1.73 16 26 H 0.00 0.04 6.86 -51.93 -0.36 -0.32 16 27 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 31 H 0.00 0.04 6.86 -51.93 -0.36 -0.32 16 32 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.39 6.30 4.08 -40.82 -0.17 6.13 16 36 H 0.44 6.30 8.08 -182.60 -1.47 4.83 16 37 H 0.43 5.42 5.47 -182.60 -1.00 4.42 16 38 H 0.17 0.74 8.06 -52.49 -0.42 0.31 16 39 H 0.41 1.54 7.72 -40.82 -0.32 1.23 16 40 H 0.41 0.44 8.87 -40.82 -0.36 0.08 16 LS Contribution 344.60 15.07 5.19 5.19 Total: -1.00 -30.18 344.60 -8.70 -38.89 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -6.32 Total: 11.37 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -2.82 Total: 1.70 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: 1.55 Total: -58.63 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.24 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.38 Total: -1.73 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.18 -8.70 -38.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348537262.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.026 kcal (2) G-P(sol) polarization free energy of solvation -30.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds