Wall clock time and date at job start Tue Mar 31 2020 15:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47181 * 2 1 4 4 C 1.50696 * 109.47391 * 239.99367 * 2 1 3 5 5 H 1.08004 * 120.00332 * 240.00475 * 4 2 1 6 6 C 1.37880 * 119.99857 * 60.00082 * 4 2 1 7 7 N 1.31515 * 119.99888 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99895 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47350 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46833 * 120.00589 * 8 6 4 11 11 H 1.48506 * 109.46889 * 240.00142 * 8 6 4 12 12 C 1.53005 * 109.46451 * 119.99598 * 2 1 3 13 13 N 1.46496 * 109.47401 * 299.99639 * 12 2 1 14 14 C 1.34773 * 119.99973 * 179.97438 * 13 12 2 15 15 O 1.21588 * 120.00151 * 359.73121 * 14 13 12 16 16 N 1.34784 * 119.99935 * 180.02562 * 14 13 12 17 17 N 1.40104 * 119.99625 * 359.72482 * 16 14 13 18 18 C 1.39165 * 119.99601 * 179.97438 * 17 16 14 19 19 N 1.32591 * 120.11902 * 359.72633 * 18 17 16 20 20 N 1.28300 * 122.28633 * 179.73646 * 19 18 17 21 21 C 1.31681 * 122.38649 * 0.55484 * 20 19 18 22 22 C 1.39554 * 119.88835 * 359.72550 * 21 20 19 23 23 N 1.39327 * 121.06573 * 179.97438 * 22 21 20 24 24 C 1.39228 * 120.11483 * 180.02562 * 18 17 16 25 25 Cl 1.73594 * 121.10242 * 359.96178 * 24 18 17 26 26 H 1.09002 * 109.47522 * 300.00912 * 1 2 3 27 27 H 1.09001 * 109.46796 * 60.00202 * 1 2 3 28 28 H 1.08993 * 109.47323 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46813 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.46840 * 299.99162 * 3 2 1 31 31 H 1.08992 * 109.47827 * 59.99924 * 3 2 1 32 32 H 0.96995 * 119.99958 * 179.97438 * 7 6 4 33 33 H 1.09007 * 109.46761 * 179.97438 * 12 2 1 34 34 H 1.08997 * 109.46989 * 60.00554 * 12 2 1 35 35 H 0.97004 * 120.00009 * 0.02562 * 13 12 2 36 36 H 0.96999 * 120.00044 * 179.72863 * 16 14 13 37 37 H 0.96999 * 120.00331 * 0.02562 * 17 16 14 38 38 H 1.08000 * 120.05782 * 179.74601 * 21 20 19 39 39 H 0.97005 * 120.00088 * 180.02562 * 23 22 21 40 40 H 0.96997 * 119.99960 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5887 -1.1312 6 6 1.6994 -0.2396 -2.4827 7 7 0.9437 0.8300 -2.6034 8 14 2.3227 -1.1199 -4.0078 9 1 3.1476 -2.2866 -3.6035 10 1 1.1680 -1.5869 -4.8164 11 1 3.1475 -0.1861 -4.8159 12 6 2.0399 -0.7212 1.2494 13 7 1.5516 -0.0305 2.4455 14 6 1.8766 -0.4912 3.6696 15 8 2.5711 -1.4830 3.7812 16 7 1.4269 0.1440 4.7700 17 7 0.6264 1.2865 4.6413 18 6 0.1616 1.9420 5.7775 19 7 0.4706 1.4842 6.9829 20 7 0.0690 2.0583 8.0577 21 6 -0.6870 3.1364 8.0413 22 6 -1.0736 3.6962 6.8229 23 7 -1.8735 4.8360 6.7769 24 6 -0.6345 3.0773 5.6525 25 17 -1.0657 3.7027 4.0915 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9562 -0.8901 31 1 1.6768 1.9564 0.8899 32 1 0.7097 1.1615 -3.4844 33 1 3.1299 -0.7216 1.2492 34 1 1.6766 -1.7489 1.2493 35 1 0.9937 0.7580 2.3564 36 1 1.6576 -0.1899 5.6510 37 1 0.3954 1.6202 3.7603 38 1 -1.0071 3.5868 8.9693 39 1 -2.1334 5.2120 5.9213 40 1 -2.1704 5.2537 7.6005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348537262.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:22 Heat of formation + Delta-G solvation = 41.306045 kcal Electronic energy + Delta-G solvation = -25610.378628 eV Core-core repulsion = 21715.229057 eV Total energy + Delta-G solvation = -3895.149570 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.116 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -42.11776 -41.25626 -38.40921 -38.02683 -37.87208 -36.54567 -35.04658 -33.85165 -32.53463 -31.27355 -30.09054 -27.58367 -27.50731 -26.74958 -25.56901 -24.32021 -22.44450 -20.86527 -20.47108 -19.83868 -19.08083 -17.96768 -17.82904 -17.48265 -16.93899 -16.75384 -16.59597 -16.35176 -16.32424 -15.99262 -15.31893 -14.82857 -14.81459 -14.76124 -14.03702 -13.75655 -13.60942 -13.22669 -13.12663 -12.80311 -12.72447 -12.56937 -12.48912 -12.27053 -12.14838 -11.96212 -11.67895 -11.50804 -11.21103 -11.01455 -10.84921 -10.71450 -10.40611 -10.10294 -9.25489 -8.88674 -8.02230 -6.17249 -0.20336 0.14360 0.63114 0.89154 1.42360 1.47018 1.56103 1.87791 1.93253 2.44219 2.47423 2.54741 3.02532 3.22038 3.31737 3.59870 3.99422 4.17035 4.32291 4.51448 4.52674 4.68514 4.86926 4.99139 5.01908 5.06713 5.18244 5.18955 5.27272 5.50567 5.65724 5.68204 5.84230 5.97916 6.10988 6.13669 6.20525 6.43105 6.61647 6.86462 6.94844 7.33283 7.50511 7.82131 8.97112 Molecular weight = 328.12amu Principal moments of inertia in cm(-1) A = 0.019687 B = 0.002998 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.886030 B = 9337.590124 C =10568.402940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.052 3.948 3 C -0.121 4.121 4 C -0.526 4.526 5 H 0.047 0.953 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.162 3.838 13 N -0.723 5.723 14 C 0.709 3.291 15 O -0.613 6.613 16 N -0.518 5.518 17 N -0.507 5.507 18 C 0.388 3.612 19 N -0.369 5.369 20 N -0.189 5.189 21 C -0.041 4.041 22 C 0.282 3.718 23 N -0.814 5.814 24 C -0.218 4.218 25 Cl -0.034 7.034 26 H 0.031 0.969 27 H 0.065 0.935 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.065 0.935 31 H 0.031 0.969 32 H 0.260 0.740 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.397 0.603 36 H 0.444 0.556 37 H 0.435 0.565 38 H 0.216 0.784 39 H 0.414 0.586 40 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.625 13.715 19.547 25.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.052 3.948 3 C -0.179 4.179 4 C -0.565 4.565 5 H 0.065 0.935 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.772 3.228 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.038 3.962 13 N -0.379 5.379 14 C 0.408 3.592 15 O -0.490 6.490 16 N -0.273 5.273 17 N -0.241 5.241 18 C 0.146 3.854 19 N -0.224 5.224 20 N -0.027 5.027 21 C -0.221 4.221 22 C 0.157 3.843 23 N -0.354 5.354 24 C -0.267 4.267 25 Cl -0.006 7.006 26 H 0.050 0.950 27 H 0.083 0.917 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.234 0.766 36 H 0.291 0.709 37 H 0.281 0.719 38 H 0.233 0.767 39 H 0.246 0.754 40 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -8.326 11.855 20.008 24.702 hybrid contribution -0.814 1.180 -2.214 2.638 sum -9.140 13.035 17.794 23.876 Atomic orbital electron populations 1.21680 0.97128 0.98847 1.00213 1.18367 0.93239 0.93041 0.90200 1.21680 0.98152 0.97820 1.00216 1.21275 1.31661 1.12195 0.91338 0.93471 1.25425 0.95130 0.95581 1.00895 1.69902 1.37034 1.23253 1.23529 0.85710 0.78089 0.78743 0.80267 1.19990 1.20829 1.20818 1.21312 0.97331 0.95006 0.82540 1.45263 1.55512 1.32965 1.04185 1.15809 0.80378 0.82412 0.80590 1.90972 1.44953 1.28260 1.84837 1.44309 1.51832 1.21967 1.09190 1.43097 1.52104 1.22397 1.06523 1.19378 0.89459 0.87896 0.88696 1.72913 1.27763 1.28745 0.92994 1.72384 1.05122 1.06111 1.19040 1.24360 1.02576 0.97068 0.98056 1.18347 0.87355 0.87188 0.91425 1.42518 1.52543 1.26264 1.14048 1.20563 1.14723 1.02489 0.88912 1.98387 1.92111 1.86052 1.24054 0.94971 0.91653 0.96055 0.96052 0.91647 0.94967 0.93046 0.93706 0.93716 0.76578 0.70922 0.71857 0.76748 0.75388 0.73690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.27 8.08 71.98 0.58 -4.69 16 2 C 0.05 2.37 0.50 -52.93 -0.03 2.35 16 3 C -0.12 -5.27 8.08 71.98 0.58 -4.69 16 4 C -0.53 -27.38 8.01 25.60 0.21 -27.18 16 5 H 0.05 2.51 7.74 -2.91 -0.02 2.49 16 6 C 0.03 1.53 5.15 84.66 0.44 1.97 16 7 N -0.90 -46.99 9.35 21.45 0.20 -46.79 16 8 Si 0.94 42.19 29.54 68.60 2.03 44.22 16 9 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 C 0.16 6.86 4.50 86.38 0.39 7.25 16 13 N -0.72 -25.64 4.92 -478.53 -2.35 -27.99 16 14 C 0.71 25.70 8.68 179.05 1.55 27.26 16 15 O -0.61 -26.82 17.18 -3.99 -0.07 -26.89 16 16 N -0.52 -15.32 6.30 -184.74 -1.16 -16.49 16 17 N -0.51 -12.81 6.40 -55.16 -0.35 -13.16 16 18 C 0.39 9.16 7.68 132.97 1.02 10.18 16 19 N -0.37 -9.45 10.55 -55.13 -0.58 -10.04 16 20 N -0.19 -4.10 11.48 -56.78 -0.65 -4.75 16 21 C -0.04 -0.53 11.21 85.03 0.95 0.42 16 22 C 0.28 3.44 6.83 38.57 0.26 3.70 16 23 N -0.81 -3.26 9.06 -50.84 -0.46 -3.72 16 24 C -0.22 -3.96 6.42 22.81 0.15 -3.81 16 25 Cl -0.03 -0.57 26.61 -2.72 -0.07 -0.65 16 26 H 0.03 1.17 6.86 -2.39 -0.02 1.15 16 27 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 28 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 31 H 0.03 1.17 6.86 -2.39 -0.02 1.15 16 32 H 0.26 13.09 8.31 -92.71 -0.77 12.32 16 33 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 34 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.40 12.45 4.08 -92.71 -0.38 12.07 16 36 H 0.44 12.85 8.08 -213.32 -1.72 11.13 16 37 H 0.44 10.40 5.47 -213.32 -1.17 9.23 16 38 H 0.22 0.79 8.06 -2.91 -0.02 0.76 16 39 H 0.41 1.59 7.72 -92.70 -0.72 0.87 16 40 H 0.43 -1.09 8.87 -92.71 -0.82 -1.91 16 Total: -1.00 -66.23 344.60 -1.02 -67.25 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: -3.64 Total: 26.26 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 6.10 Total: 12.76 kcal Atomic # 7 Polarization: -117.58 SS G_CDS: -5.36 Total: -122.94 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.07 Total: -26.89 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -0.07 Total: -0.65 kcal Total: -66.23 -1.02 -67.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348537262.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.553 kcal (2) G-P(sol) polarization free energy of solvation -66.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds