Wall clock time and date at job start Tue Mar 31 2020 16:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46828 * 2 1 4 4 O 1.42901 * 109.46960 * 119.99946 * 2 1 3 5 5 C 1.35675 * 116.99818 * 269.99942 * 4 2 1 6 6 C 1.38924 * 119.67986 * 180.02562 * 5 4 2 7 7 C 1.38379 * 119.10782 * 179.97438 * 6 5 4 8 8 C 1.38829 * 118.48948 * 0.02562 * 7 6 5 9 9 C 1.38045 * 119.28658 * 359.97438 * 8 7 6 10 10 N 1.31968 * 120.83255 * 359.74735 * 9 8 7 11 11 C 1.50704 * 109.47261 * 240.00107 * 2 1 3 12 12 O 1.21286 * 119.99890 * 244.99592 * 11 2 1 13 13 N 1.34771 * 119.99782 * 65.00104 * 11 2 1 14 14 C 1.39992 * 119.99905 * 175.49649 * 13 11 2 15 15 C 1.38921 * 120.00283 * 35.11960 * 14 13 11 16 16 C 1.38000 * 120.00017 * 179.74738 * 15 14 13 17 17 C 1.38908 * 120.00196 * 0.22861 * 16 15 14 18 18 O 1.35778 * 119.99929 * 180.02562 * 17 16 15 19 19 C 1.34812 * 117.00048 * 354.66293 * 18 17 16 20 20 H 1.08008 * 119.99805 * 5.03356 * 19 18 17 21 21 C 1.38632 * 120.00294 * 185.03744 * 19 18 17 22 22 N 1.31569 * 120.00306 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99535 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47043 * 90.00391 * 23 21 19 25 25 H 1.48502 * 109.46824 * 210.00156 * 23 21 19 26 26 H 1.48493 * 109.47138 * 330.00015 * 23 21 19 27 27 C 1.38905 * 120.00332 * 0.02562 * 17 16 15 28 28 C 1.38005 * 120.00004 * 0.02562 * 27 17 16 29 29 H 1.09003 * 109.46712 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47329 * 299.99751 * 1 2 3 31 31 H 1.09000 * 109.47037 * 60.00307 * 1 2 3 32 32 H 1.07998 * 120.44645 * 359.95630 * 6 5 4 33 33 H 1.08003 * 120.75117 * 180.02562 * 7 6 5 34 34 H 1.07994 * 120.35948 * 180.02562 * 8 7 6 35 35 H 1.08000 * 119.58446 * 180.02562 * 9 8 7 36 36 H 0.97002 * 120.00115 * 355.49040 * 13 11 2 37 37 H 1.07998 * 119.99805 * 0.02798 * 15 14 13 38 38 H 1.08004 * 119.99797 * 180.25798 * 16 15 14 39 39 H 0.96993 * 120.00122 * 179.97438 * 22 21 19 40 40 H 1.07994 * 120.00299 * 180.02562 * 27 17 16 41 41 H 1.08000 * 120.00011 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2116 0.0830 2.2741 6 6 2.6747 -0.5148 3.4396 7 6 2.8804 0.2681 4.5618 8 6 2.6140 1.6280 4.4785 9 6 2.1557 2.1546 3.2875 10 7 1.9743 1.3832 2.2323 11 6 2.0324 -0.7104 -1.2305 12 8 2.6531 -1.7467 -1.1215 13 7 1.7920 -0.1941 -2.4520 14 6 2.3382 -0.8019 -3.5886 15 6 2.4705 -2.1838 -3.6417 16 6 3.0041 -2.7833 -4.7643 17 6 3.4133 -2.0046 -5.8394 18 8 3.9378 -2.5945 -6.9442 19 6 4.1364 -3.9269 -6.8907 20 1 3.8062 -4.4879 -6.0288 21 6 4.7644 -4.5769 -7.9418 22 7 4.9587 -5.8771 -7.8894 23 14 5.3348 -3.6066 -9.4327 24 1 6.7276 -3.1394 -9.2159 25 1 5.2856 -4.4746 -10.6366 26 1 4.4447 -2.4346 -9.6308 27 6 3.2859 -0.6225 -5.7844 28 6 2.7533 -0.0228 -4.6613 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.8711 -1.5764 3.4694 33 1 3.2402 -0.1689 5.4817 34 1 2.7643 2.2673 5.3358 35 1 1.9472 3.2120 3.2172 36 1 1.2404 0.5986 -2.5435 37 1 2.1516 -2.7892 -2.8062 38 1 3.1031 -3.8579 -4.8072 39 1 5.3977 -6.3319 -8.6250 40 1 3.6036 -0.0172 -6.6204 41 1 2.6539 1.0517 -4.6187 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361440367.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:58 Heat of formation + Delta-G solvation = -21.561495 kcal Electronic energy + Delta-G solvation = -26123.168873 eV Core-core repulsion = 22163.140509 eV Total energy + Delta-G solvation = -3960.028364 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.96 seconds Orbital eigenvalues (eV) -41.12136 -40.20551 -38.97506 -38.03539 -36.54396 -34.20140 -32.87062 -32.48959 -32.16985 -30.36210 -30.29956 -28.15593 -25.48846 -24.90664 -23.95534 -23.29149 -22.43888 -21.32866 -20.09686 -18.87157 -18.33902 -17.69247 -17.22714 -16.71775 -16.49966 -16.25780 -15.99789 -15.13740 -14.86540 -14.64369 -14.47023 -14.04452 -13.83577 -13.78242 -13.66662 -13.48839 -13.35456 -12.79699 -12.65112 -12.41910 -12.33284 -12.28263 -12.06216 -11.78617 -11.67910 -11.38498 -10.96844 -10.74924 -10.31899 -10.24416 -9.98851 -9.74757 -9.62087 -9.26617 -8.84575 -8.77462 -8.29869 -7.08949 -6.40255 -4.06185 0.79466 0.89945 1.94053 2.10327 2.34223 2.71724 3.22880 3.26670 3.37412 3.40748 3.44087 3.89704 4.24341 4.41815 4.48121 4.52374 4.60621 4.67672 4.74896 4.84253 4.84855 4.87840 5.11193 5.25109 5.35571 5.37499 5.53990 5.58523 5.64157 5.75281 5.82904 6.03340 6.06256 6.08118 6.22221 6.56656 6.73655 6.84861 6.93497 7.07555 7.29241 7.45824 7.53773 7.60738 7.80269 8.03054 8.23775 8.94491 9.55779 10.67260 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.027973 B = 0.002098 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.736527 B =13341.759755 C =13722.690616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.076 3.924 3 H 0.115 0.885 4 O -0.274 6.274 5 C 0.325 3.675 6 C -0.187 4.187 7 C -0.040 4.040 8 C -0.215 4.215 9 C 0.139 3.861 10 N -0.544 5.544 11 C 0.507 3.493 12 O -0.503 6.503 13 N -0.656 5.656 14 C 0.042 3.958 15 C -0.065 4.065 16 C -0.207 4.207 17 C 0.153 3.847 18 O -0.215 6.215 19 C -0.389 4.389 20 H 0.107 0.893 21 C 0.063 3.937 22 N -0.878 5.878 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.259 1.259 27 C -0.178 4.178 28 C -0.093 4.093 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.159 0.841 36 H 0.403 0.597 37 H 0.128 0.872 38 H 0.137 0.863 39 H 0.279 0.721 40 H 0.122 0.878 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.661 17.616 22.130 29.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.015 3.985 3 H 0.132 0.868 4 O -0.180 6.180 5 C 0.146 3.854 6 C -0.208 4.208 7 C -0.066 4.066 8 C -0.236 4.236 9 C -0.016 4.016 10 N -0.268 5.268 11 C 0.292 3.708 12 O -0.377 6.377 13 N -0.302 5.302 14 C -0.050 4.050 15 C -0.085 4.085 16 C -0.227 4.227 17 C 0.100 3.900 18 O -0.120 6.120 19 C -0.464 4.464 20 H 0.125 0.875 21 C -0.141 4.141 22 N -0.516 5.516 23 Si 0.732 3.268 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.184 1.184 27 C -0.198 4.198 28 C -0.113 4.113 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.162 0.838 33 H 0.159 0.841 34 H 0.155 0.845 35 H 0.177 0.823 36 H 0.238 0.762 37 H 0.146 0.854 38 H 0.155 0.845 39 H 0.090 0.910 40 H 0.140 0.860 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.302 16.803 21.069 28.199 hybrid contribution 0.291 0.397 0.123 0.507 sum -8.011 17.200 21.192 28.445 Atomic orbital electron populations 1.22177 0.92312 1.03912 1.03784 1.22059 0.95751 0.97903 0.82742 0.86774 1.86406 1.79735 1.34278 1.17548 1.19909 0.91064 0.87364 0.87054 1.21137 1.05837 1.02451 0.91386 1.21441 0.93989 0.93436 0.97685 1.21986 1.05322 0.96240 1.00032 1.22418 0.92695 0.99190 0.87308 1.67248 1.22131 1.04726 1.32657 1.20242 0.80484 0.86018 0.84055 1.90761 1.38740 1.22181 1.85982 1.43032 1.51488 1.31339 1.04350 1.17286 1.07915 0.91952 0.87887 1.20919 0.97578 0.92648 0.97378 1.21233 1.06115 1.01297 0.94014 1.19156 0.92610 0.91733 0.86499 1.83563 1.71454 1.24483 1.32529 1.20786 1.39366 0.78615 1.07667 0.87541 1.24479 0.95734 0.95285 0.98581 1.69654 1.41118 1.07526 1.33275 0.86168 0.79773 0.80127 0.80742 1.19890 1.20800 1.18356 1.19984 1.08353 0.91925 0.99497 1.20360 0.99698 0.98135 0.93151 0.90998 0.90768 0.90246 0.83817 0.84073 0.84540 0.82333 0.76175 0.85448 0.84514 0.91036 0.85991 0.86468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.48 37.16 0.35 -1.08 16 2 C 0.08 0.87 2.90 -27.88 -0.08 0.79 16 3 H 0.11 1.18 6.98 -51.93 -0.36 0.81 16 4 O -0.27 -3.68 9.30 -38.58 -0.36 -4.03 16 5 C 0.33 3.71 7.45 -17.12 -0.13 3.58 16 6 C -0.19 -1.75 10.04 -39.28 -0.39 -2.15 16 7 C -0.04 -0.27 10.17 -39.31 -0.40 -0.67 16 8 C -0.22 -1.31 10.11 -39.43 -0.40 -1.71 16 9 C 0.14 1.01 11.18 -17.56 -0.20 0.82 16 10 N -0.54 -5.48 8.64 -13.33 -0.12 -5.60 16 11 C 0.51 7.52 7.02 -10.99 -0.08 7.45 16 12 O -0.50 -9.84 13.95 -14.31 -0.20 -10.04 16 13 N -0.66 -8.73 5.30 -9.82 -0.05 -8.78 16 14 C 0.04 0.72 6.30 -83.62 -0.53 0.19 16 15 C -0.07 -1.32 8.69 -39.42 -0.34 -1.66 16 16 C -0.21 -4.68 9.16 -39.42 -0.36 -5.04 16 17 C 0.15 3.55 6.65 -39.09 -0.26 3.29 16 18 O -0.22 -5.70 8.58 0.01 0.00 -5.70 16 19 C -0.39 -11.08 9.94 30.88 0.31 -10.78 16 20 H 0.11 3.12 5.43 -52.48 -0.28 2.84 16 21 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 22 N -0.88 -25.64 13.96 55.48 0.77 -24.86 16 23 Si 0.91 21.76 28.62 -169.99 -4.86 16.89 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 27 C -0.18 -3.45 9.98 -39.42 -0.39 -3.84 16 28 C -0.09 -1.53 9.96 -39.41 -0.39 -1.92 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.51 7.78 -51.93 -0.40 0.11 16 32 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 34 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 35 H 0.16 0.68 8.06 -52.49 -0.42 0.25 16 36 H 0.40 3.67 8.45 -40.82 -0.35 3.32 16 37 H 0.13 2.60 6.23 -52.49 -0.33 2.27 16 38 H 0.14 3.26 5.63 -52.48 -0.30 2.97 16 39 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 41 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 357.64 15.07 5.39 5.39 Total: -1.00 -34.47 357.64 -7.35 -41.82 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -4.54 Total: 5.97 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -3.39 Total: -11.05 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.61 Total: -39.24 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.56 Total: -19.78 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.86 Total: 16.89 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.47 -7.35 -41.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361440367.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.258 kcal (2) G-P(sol) polarization free energy of solvation -34.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.96 seconds