Wall clock time and date at job start Tue Mar 31 2020 16:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46828 * 2 1 4 4 O 1.42901 * 109.46960 * 119.99946 * 2 1 3 5 5 C 1.35675 * 116.99818 * 269.99942 * 4 2 1 6 6 C 1.38924 * 119.67986 * 180.02562 * 5 4 2 7 7 C 1.38379 * 119.10782 * 179.97438 * 6 5 4 8 8 C 1.38829 * 118.48948 * 0.02562 * 7 6 5 9 9 C 1.38045 * 119.28658 * 359.97438 * 8 7 6 10 10 N 1.31968 * 120.83255 * 359.74735 * 9 8 7 11 11 C 1.50704 * 109.47261 * 240.00107 * 2 1 3 12 12 O 1.21286 * 119.99890 * 244.99592 * 11 2 1 13 13 N 1.34771 * 119.99782 * 65.00104 * 11 2 1 14 14 C 1.39992 * 119.99905 * 175.49649 * 13 11 2 15 15 C 1.38921 * 120.00283 * 35.11960 * 14 13 11 16 16 C 1.38000 * 120.00017 * 179.74738 * 15 14 13 17 17 C 1.38908 * 120.00196 * 0.22861 * 16 15 14 18 18 O 1.35778 * 119.99929 * 180.02562 * 17 16 15 19 19 C 1.34812 * 117.00048 * 354.66293 * 18 17 16 20 20 H 1.08008 * 119.99805 * 5.03356 * 19 18 17 21 21 C 1.38632 * 120.00294 * 185.03744 * 19 18 17 22 22 N 1.31569 * 120.00306 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99535 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47043 * 90.00391 * 23 21 19 25 25 H 1.48502 * 109.46824 * 210.00156 * 23 21 19 26 26 H 1.48493 * 109.47138 * 330.00015 * 23 21 19 27 27 C 1.38905 * 120.00332 * 0.02562 * 17 16 15 28 28 C 1.38005 * 120.00004 * 0.02562 * 27 17 16 29 29 H 1.09003 * 109.46712 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47329 * 299.99751 * 1 2 3 31 31 H 1.09000 * 109.47037 * 60.00307 * 1 2 3 32 32 H 1.07998 * 120.44645 * 359.95630 * 6 5 4 33 33 H 1.08003 * 120.75117 * 180.02562 * 7 6 5 34 34 H 1.07994 * 120.35948 * 180.02562 * 8 7 6 35 35 H 1.08000 * 119.58446 * 180.02562 * 9 8 7 36 36 H 0.97002 * 120.00115 * 355.49040 * 13 11 2 37 37 H 1.07998 * 119.99805 * 0.02798 * 15 14 13 38 38 H 1.08004 * 119.99797 * 180.25798 * 16 15 14 39 39 H 0.96993 * 120.00122 * 179.97438 * 22 21 19 40 40 H 1.07994 * 120.00299 * 180.02562 * 27 17 16 41 41 H 1.08000 * 120.00011 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2116 0.0830 2.2741 6 6 2.6747 -0.5148 3.4396 7 6 2.8804 0.2681 4.5618 8 6 2.6140 1.6280 4.4785 9 6 2.1557 2.1546 3.2875 10 7 1.9743 1.3832 2.2323 11 6 2.0324 -0.7104 -1.2305 12 8 2.6531 -1.7467 -1.1215 13 7 1.7920 -0.1941 -2.4520 14 6 2.3382 -0.8019 -3.5886 15 6 2.4705 -2.1838 -3.6417 16 6 3.0041 -2.7833 -4.7643 17 6 3.4133 -2.0046 -5.8394 18 8 3.9378 -2.5945 -6.9442 19 6 4.1364 -3.9269 -6.8907 20 1 3.8062 -4.4879 -6.0288 21 6 4.7644 -4.5769 -7.9418 22 7 4.9587 -5.8771 -7.8894 23 14 5.3348 -3.6066 -9.4327 24 1 6.7276 -3.1394 -9.2159 25 1 5.2856 -4.4746 -10.6366 26 1 4.4447 -2.4346 -9.6308 27 6 3.2859 -0.6225 -5.7844 28 6 2.7533 -0.0228 -4.6613 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.8711 -1.5764 3.4694 33 1 3.2402 -0.1689 5.4817 34 1 2.7643 2.2673 5.3358 35 1 1.9472 3.2120 3.2172 36 1 1.2404 0.5986 -2.5435 37 1 2.1516 -2.7892 -2.8062 38 1 3.1031 -3.8579 -4.8072 39 1 5.3977 -6.3319 -8.6250 40 1 3.6036 -0.0172 -6.6204 41 1 2.6539 1.0517 -4.6187 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361440367.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:57 Heat of formation + Delta-G solvation = -45.671767 kcal Electronic energy + Delta-G solvation = -26124.214373 eV Core-core repulsion = 22163.140509 eV Total energy + Delta-G solvation = -3961.073864 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.02154 -41.35731 -40.52862 -39.04274 -38.09490 -35.61690 -34.42525 -33.49364 -33.16624 -31.92589 -31.03629 -29.68219 -27.25625 -25.97345 -24.66321 -24.25183 -23.84100 -22.76482 -21.36757 -20.06211 -19.61095 -19.32416 -18.72471 -17.95792 -17.44019 -17.02668 -16.74329 -16.63270 -16.03626 -15.80814 -15.70468 -15.63431 -15.46740 -15.31093 -14.52445 -14.46758 -14.30042 -14.22349 -14.07989 -13.95624 -13.47154 -13.38384 -13.28966 -12.94375 -12.79890 -12.75292 -12.51896 -12.22707 -12.01803 -11.48006 -11.22266 -10.92183 -10.84658 -10.69508 -10.59176 -9.89755 -9.50629 -8.74115 -8.50370 -6.23321 0.20068 0.31629 0.40640 0.48020 1.32190 1.34963 1.38087 1.48421 1.54119 2.28499 2.39599 2.73750 2.82489 3.01774 3.13124 3.26449 3.45855 3.82575 3.95554 4.04953 4.05372 4.06892 4.12253 4.22852 4.37011 4.42984 4.58200 4.62200 4.66045 4.68231 4.80762 4.99299 5.06144 5.08606 5.16635 5.29838 5.32959 5.42866 5.53021 5.55555 5.72766 5.87583 6.12885 6.18530 6.40357 6.82830 6.84206 7.07129 7.54592 8.61425 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.027973 B = 0.002098 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.736527 B =13341.759755 C =13722.690616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.085 3.915 3 H 0.131 0.869 4 O -0.307 6.307 5 C 0.294 3.706 6 C -0.209 4.209 7 C -0.038 4.038 8 C -0.204 4.204 9 C 0.129 3.871 10 N -0.556 5.556 11 C 0.506 3.494 12 O -0.557 6.557 13 N -0.638 5.638 14 C 0.067 3.933 15 C -0.082 4.082 16 C -0.224 4.224 17 C 0.114 3.886 18 O -0.238 6.238 19 C -0.401 4.401 20 H 0.074 0.926 21 C 0.006 3.994 22 N -0.925 5.925 23 Si 0.978 3.022 24 H -0.266 1.266 25 H -0.268 1.268 26 H -0.257 1.257 27 C -0.166 4.166 28 C -0.073 4.073 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.138 0.862 33 H 0.170 0.830 34 H 0.172 0.828 35 H 0.191 0.809 36 H 0.430 0.570 37 H 0.118 0.882 38 H 0.105 0.895 39 H 0.285 0.715 40 H 0.148 0.852 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.462 22.900 23.609 34.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.025 3.975 3 H 0.149 0.851 4 O -0.214 6.214 5 C 0.116 3.884 6 C -0.230 4.230 7 C -0.063 4.063 8 C -0.224 4.224 9 C -0.026 4.026 10 N -0.280 5.280 11 C 0.293 3.707 12 O -0.434 6.434 13 N -0.287 5.287 14 C -0.026 4.026 15 C -0.102 4.102 16 C -0.244 4.244 17 C 0.065 3.935 18 O -0.145 6.145 19 C -0.478 4.478 20 H 0.092 0.908 21 C -0.192 4.192 22 N -0.566 5.566 23 Si 0.799 3.201 24 H -0.191 1.191 25 H -0.192 1.192 26 H -0.180 1.180 27 C -0.185 4.185 28 C -0.093 4.093 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.126 0.874 32 H 0.156 0.844 33 H 0.188 0.812 34 H 0.189 0.811 35 H 0.207 0.793 36 H 0.270 0.730 37 H 0.135 0.865 38 H 0.123 0.877 39 H 0.095 0.905 40 H 0.166 0.834 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -9.157 22.160 22.599 32.949 hybrid contribution 0.409 -1.017 0.100 1.101 sum -8.748 21.143 22.699 32.231 Atomic orbital electron populations 1.22178 0.90064 1.03579 1.05610 1.22072 0.97161 0.97488 0.80775 0.85127 1.86356 1.80656 1.35826 1.18538 1.20122 0.93182 0.88177 0.86931 1.21346 1.06747 1.02800 0.92061 1.21848 0.92929 0.93811 0.97713 1.22423 1.03089 0.96196 1.00667 1.23072 0.92084 1.00369 0.87088 1.67214 1.22594 1.04191 1.34031 1.21018 0.79164 0.85237 0.85283 1.90754 1.41097 1.24713 1.86790 1.42907 1.51243 1.31708 1.02806 1.17435 1.05214 0.90858 0.89124 1.20898 0.98469 0.94555 0.96259 1.21113 1.07711 1.00099 0.95501 1.19703 0.93998 0.93575 0.86240 1.83503 1.73960 1.22892 1.34152 1.20673 1.39979 0.79929 1.07176 0.90796 1.25386 0.95831 0.96323 1.01662 1.69752 1.42938 1.09138 1.34735 0.85123 0.79299 0.78666 0.77023 1.19074 1.19236 1.18045 1.20429 1.06896 0.90055 1.01162 1.20889 0.96776 1.00764 0.90871 0.92412 0.89906 0.87368 0.84371 0.81217 0.81090 0.79255 0.72951 0.86455 0.87741 0.90530 0.83430 0.80552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.48 71.98 0.68 -1.72 16 2 C 0.08 1.83 2.90 29.85 0.09 1.92 16 3 H 0.13 2.36 6.98 -2.39 -0.02 2.34 16 4 O -0.31 -8.33 9.30 -70.93 -0.66 -8.99 16 5 C 0.29 6.56 7.45 84.80 0.63 7.19 16 6 C -0.21 -3.84 10.04 22.47 0.23 -3.62 16 7 C -0.04 -0.42 10.17 22.44 0.23 -0.19 16 8 C -0.20 -1.74 10.11 22.37 0.23 -1.51 16 9 C 0.13 1.46 11.18 84.63 0.95 2.40 16 10 N -0.56 -10.11 8.64 -308.96 -2.67 -12.78 16 11 C 0.51 14.51 7.02 87.66 0.62 15.13 16 12 O -0.56 -22.42 13.95 15.94 0.22 -22.19 16 13 N -0.64 -15.07 5.30 -303.38 -1.61 -16.68 16 14 C 0.07 2.17 6.30 38.17 0.24 2.41 16 15 C -0.08 -3.40 8.69 22.38 0.19 -3.21 16 16 C -0.22 -10.85 9.16 22.37 0.20 -10.65 16 17 C 0.11 5.46 6.65 22.59 0.15 5.61 16 18 O -0.24 -13.07 8.58 -22.87 -0.20 -13.27 16 19 C -0.40 -24.44 9.94 67.91 0.68 -23.76 16 20 H 0.07 4.82 5.43 -2.91 -0.02 4.80 16 21 C 0.01 0.36 5.49 84.83 0.47 0.83 16 22 N -0.93 -56.88 13.96 21.61 0.30 -56.57 16 23 Si 0.98 45.88 28.62 68.60 1.96 47.85 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 27 C -0.17 -6.03 9.98 22.37 0.22 -5.81 16 28 C -0.07 -2.09 9.96 22.38 0.22 -1.87 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.11 0.98 7.78 -2.39 -0.02 0.96 16 32 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 33 H 0.17 0.80 8.06 -2.91 -0.02 0.77 16 34 H 0.17 0.26 8.06 -2.91 -0.02 0.24 16 35 H 0.19 0.81 8.06 -2.91 -0.02 0.78 16 36 H 0.43 5.70 8.45 -92.71 -0.78 4.92 16 37 H 0.12 5.11 6.23 -2.91 -0.02 5.09 16 38 H 0.10 5.64 5.63 -2.91 -0.02 5.62 16 39 H 0.29 16.00 8.31 -92.71 -0.77 15.23 16 40 H 0.15 4.64 8.06 -2.91 -0.02 4.61 16 41 H 0.18 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -83.42 357.64 3.67 -79.75 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.30 Total: 19.74 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: 6.02 Total: -16.84 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -3.98 Total: -86.03 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -0.63 Total: -44.45 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.96 Total: 47.85 kcal Total: -83.42 3.67 -79.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361440367.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.079 kcal (2) G-P(sol) polarization free energy of solvation -83.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds