Wall clock time and date at job start Tue Mar 31 2020 16:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.46942 * 2 1 4 4 O 1.42894 * 109.47405 * 239.99874 * 2 1 3 5 5 C 1.35668 * 117.00396 * 89.99425 * 4 2 1 6 6 C 1.38923 * 119.68895 * 179.73252 * 5 4 2 7 7 C 1.38374 * 119.11162 * 179.75821 * 6 5 4 8 8 C 1.38826 * 118.48661 * 0.50692 * 7 6 5 9 9 C 1.38046 * 119.28879 * 359.73047 * 8 7 6 10 10 N 1.31956 * 120.83796 * 0.02562 * 9 8 7 11 11 C 1.50698 * 109.47424 * 119.99400 * 2 1 3 12 12 O 1.21297 * 120.00131 * 114.99835 * 11 2 1 13 13 N 1.34780 * 119.99969 * 295.00608 * 11 2 1 14 14 C 1.39996 * 119.99779 * 175.48470 * 13 11 2 15 15 C 1.38923 * 120.00086 * 215.11878 * 14 13 11 16 16 C 1.38001 * 119.99750 * 180.02562 * 15 14 13 17 17 C 1.38907 * 120.00167 * 0.02562 * 16 15 14 18 18 O 1.35776 * 119.99511 * 179.97438 * 17 16 15 19 19 C 1.34821 * 117.00347 * 5.34916 * 18 17 16 20 20 H 1.08002 * 119.99841 * 354.96028 * 19 18 17 21 21 C 1.38633 * 120.00255 * 174.96494 * 19 18 17 22 22 N 1.31570 * 119.99753 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99917 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47649 * 59.99671 * 23 21 19 25 25 H 1.48503 * 109.46932 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47011 * 299.99464 * 23 21 19 27 27 C 1.38899 * 120.00470 * 0.25082 * 17 16 15 28 28 C 1.38010 * 120.00162 * 359.44886 * 27 17 16 29 29 H 1.09001 * 109.47378 * 300.00174 * 1 2 3 30 30 H 1.08996 * 109.47502 * 60.00849 * 1 2 3 31 31 H 1.09009 * 109.46927 * 180.02562 * 1 2 3 32 32 H 1.08005 * 120.44092 * 0.02562 * 6 5 4 33 33 H 1.08004 * 120.75616 * 180.23840 * 7 6 5 34 34 H 1.08002 * 120.35625 * 179.70969 * 8 7 6 35 35 H 1.08002 * 119.58259 * 180.02562 * 9 8 7 36 36 H 0.97001 * 120.00163 * 355.47758 * 13 11 2 37 37 H 1.07998 * 120.00080 * 0.02562 * 15 14 13 38 38 H 1.08003 * 119.99527 * 179.97438 * 16 15 14 39 39 H 0.97004 * 119.99801 * 180.02562 * 22 21 19 40 40 H 1.08006 * 119.99960 * 179.70488 * 27 17 16 41 41 H 1.07998 * 120.00089 * 180.27182 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2116 0.0828 -2.2741 6 6 2.6795 -0.5141 -3.4380 7 6 2.8799 0.2678 -4.5620 8 6 2.6138 1.6278 -4.4785 9 6 2.1556 2.1544 -3.2875 10 7 1.9695 1.3824 -2.2337 11 6 2.0324 -0.7103 1.2305 12 8 2.6531 -1.7467 1.1216 13 7 1.7919 -0.1939 2.4520 14 6 2.1752 -0.9003 3.5983 15 6 1.3910 -0.8439 4.7437 16 6 1.7692 -1.5398 5.8738 17 6 2.9343 -2.2961 5.8663 18 8 3.3066 -2.9803 6.9784 19 6 2.4474 -2.9738 8.0174 20 1 1.5502 -2.3743 7.9724 21 6 2.7157 -3.7364 9.1435 22 7 3.8085 -4.4671 9.1982 23 14 1.5249 -3.7279 10.5827 24 1 0.1966 -4.2127 10.1292 25 1 2.0372 -4.6192 11.6543 26 1 1.3940 -2.3453 11.1086 27 6 3.7215 -2.3479 4.7230 28 6 3.3402 -1.6571 3.5908 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 2.8801 -1.5750 -3.4665 33 1 3.2392 -0.1693 -5.4819 34 1 2.7641 2.2670 -5.3360 35 1 1.9467 3.2117 -3.2174 36 1 1.3533 0.6671 2.5369 37 1 0.4854 -0.2556 4.7496 38 1 1.1597 -1.4956 6.7643 39 1 3.9960 -5.0010 9.9860 40 1 4.6298 -2.9322 4.7188 41 1 3.9499 -1.7009 2.7005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361440368.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:06 Heat of formation + Delta-G solvation = -23.646109 kcal Electronic energy + Delta-G solvation = -26033.845455 eV Core-core repulsion = 22073.726695 eV Total energy + Delta-G solvation = -3960.118760 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -41.10777 -40.14904 -38.84647 -37.97912 -36.39377 -34.14120 -32.86966 -32.45093 -32.03815 -30.34336 -30.22153 -27.89829 -25.50145 -25.01739 -23.95694 -23.25996 -22.25802 -21.40511 -20.16524 -18.85784 -18.15831 -17.80390 -17.14788 -16.64919 -16.32907 -16.19853 -15.92304 -15.09496 -14.86278 -14.62770 -14.57281 -14.18637 -13.74434 -13.59665 -13.57697 -13.45781 -13.33526 -12.83629 -12.66162 -12.43647 -12.33038 -12.04852 -11.86488 -11.57944 -11.55219 -11.38199 -11.01793 -10.73805 -10.47320 -10.31723 -9.98977 -9.72727 -9.58599 -9.23892 -8.84197 -8.71357 -8.21401 -6.95755 -6.44386 -4.02662 0.79508 0.89960 2.04233 2.19872 2.35829 2.77396 3.13070 3.14953 3.17324 3.39676 3.46298 3.90357 3.96994 4.46110 4.49271 4.59138 4.65628 4.68766 4.74494 4.85269 4.87732 5.09536 5.28221 5.32913 5.35952 5.40541 5.54458 5.58886 5.77434 5.79221 5.82735 6.04978 6.11779 6.19915 6.26273 6.79564 6.82430 6.87856 6.99543 7.14248 7.21281 7.39891 7.47211 7.64985 7.76811 7.99742 8.28239 9.00613 9.70789 10.73383 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.039642 B = 0.001961 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.144635 B =14276.014564 C =14659.883547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.076 3.924 3 H 0.113 0.887 4 O -0.274 6.274 5 C 0.325 3.675 6 C -0.188 4.188 7 C -0.040 4.040 8 C -0.216 4.216 9 C 0.140 3.860 10 N -0.544 5.544 11 C 0.507 3.493 12 O -0.506 6.506 13 N -0.654 5.654 14 C 0.033 3.967 15 C -0.087 4.087 16 C -0.220 4.220 17 C 0.148 3.852 18 O -0.175 6.175 19 C -0.393 4.393 20 H 0.092 0.908 21 C 0.039 3.961 22 N -0.861 5.861 23 Si 0.941 3.059 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.179 4.179 28 C -0.066 4.066 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.159 0.841 36 H 0.403 0.597 37 H 0.111 0.889 38 H 0.132 0.868 39 H 0.271 0.729 40 H 0.121 0.879 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.247 14.293 -24.087 28.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.015 3.985 3 H 0.131 0.869 4 O -0.180 6.180 5 C 0.146 3.854 6 C -0.209 4.209 7 C -0.066 4.066 8 C -0.236 4.236 9 C -0.016 4.016 10 N -0.268 5.268 11 C 0.292 3.708 12 O -0.380 6.380 13 N -0.300 5.300 14 C -0.059 4.059 15 C -0.107 4.107 16 C -0.240 4.240 17 C 0.094 3.906 18 O -0.079 6.079 19 C -0.469 4.469 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.496 5.496 23 Si 0.766 3.234 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.199 4.199 28 C -0.086 4.086 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.162 0.838 33 H 0.159 0.841 34 H 0.155 0.845 35 H 0.177 0.823 36 H 0.237 0.763 37 H 0.129 0.871 38 H 0.150 0.850 39 H 0.081 0.919 40 H 0.139 0.861 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.755 13.288 -23.127 27.286 hybrid contribution -0.687 0.317 0.049 0.759 sum -6.442 13.606 -23.078 27.554 Atomic orbital electron populations 1.22155 0.92252 1.03902 1.03733 1.22051 0.95816 0.97852 0.82732 0.86895 1.86404 1.79707 1.34301 1.17553 1.19923 0.90998 0.87374 0.87101 1.21131 1.05892 1.02445 0.91387 1.21436 0.94024 0.93443 0.97656 1.21986 1.05378 0.96231 1.00018 1.22420 0.92644 0.99193 0.87336 1.67261 1.22097 1.04738 1.32662 1.20221 0.80814 0.85680 0.84112 1.90745 1.38332 1.22975 1.85952 1.43021 1.60576 1.22398 1.03986 1.17222 0.97458 1.04617 0.86622 1.20473 0.97684 1.00093 0.92467 1.20969 1.00155 1.03551 0.99345 1.19422 0.92313 0.91076 0.87777 1.83992 1.42964 1.61707 1.19189 1.21271 1.03778 1.28809 0.93015 0.89097 1.25294 0.97448 0.95368 0.98439 1.70039 1.23969 1.26107 1.29477 0.85777 0.79444 0.78620 0.79556 1.19511 1.20284 1.19513 1.20152 1.02295 1.06094 0.91343 1.20748 0.94378 0.96111 0.97402 0.90214 0.90838 0.91038 0.83837 0.84090 0.84546 0.82334 0.76253 0.87063 0.85041 0.91943 0.86069 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.49 37.16 0.35 -1.15 16 2 C 0.08 0.88 2.90 -27.89 -0.08 0.80 16 3 H 0.11 1.17 6.98 -51.92 -0.36 0.81 16 4 O -0.27 -3.68 9.30 -38.56 -0.36 -4.04 16 5 C 0.32 3.69 7.45 -17.11 -0.13 3.56 16 6 C -0.19 -1.73 10.04 -39.28 -0.39 -2.13 16 7 C -0.04 -0.27 10.17 -39.31 -0.40 -0.66 16 8 C -0.22 -1.30 10.11 -39.43 -0.40 -1.69 16 9 C 0.14 1.01 11.17 -17.57 -0.20 0.82 16 10 N -0.54 -5.48 8.65 -13.33 -0.12 -5.60 16 11 C 0.51 7.62 7.02 -10.98 -0.08 7.55 16 12 O -0.51 -9.87 13.95 -14.32 -0.20 -10.07 16 13 N -0.65 -9.04 5.30 -9.82 -0.05 -9.09 16 14 C 0.03 0.59 6.30 -83.62 -0.53 0.06 16 15 C -0.09 -1.55 9.96 -39.41 -0.39 -1.95 16 16 C -0.22 -4.72 9.16 -39.42 -0.36 -5.08 16 17 C 0.15 3.63 6.65 -39.09 -0.26 3.37 16 18 O -0.18 -5.04 9.76 -0.01 0.00 -5.04 16 19 C -0.39 -10.94 9.48 30.88 0.29 -10.65 16 20 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -25.35 13.67 55.48 0.76 -24.59 16 23 Si 0.94 20.45 29.55 -169.99 -5.02 15.42 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 26 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 27 C -0.18 -4.01 9.98 -39.42 -0.39 -4.40 16 28 C -0.07 -1.34 8.69 -39.41 -0.34 -1.69 16 29 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 32 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 33 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 34 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 35 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.40 3.94 8.76 -40.82 -0.36 3.59 16 37 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.13 2.77 5.63 -52.48 -0.30 2.47 16 39 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.12 2.64 8.06 -52.48 -0.42 2.21 16 41 H 0.13 2.57 6.23 -52.49 -0.33 2.25 16 LS Contribution 359.39 15.07 5.42 5.42 Total: -1.00 -35.03 359.39 -7.53 -42.56 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -4.55 Total: 7.29 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -3.40 Total: -12.26 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.59 Total: -39.29 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.56 Total: -19.15 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.03 -7.53 -42.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361440368.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.917 kcal (2) G-P(sol) polarization free energy of solvation -35.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds