Wall clock time and date at job start Tue Mar 31 2020 16:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.46942 * 2 1 4 4 O 1.42894 * 109.47405 * 239.99874 * 2 1 3 5 5 C 1.35668 * 117.00396 * 89.99425 * 4 2 1 6 6 C 1.38923 * 119.68895 * 179.73252 * 5 4 2 7 7 C 1.38374 * 119.11162 * 179.75821 * 6 5 4 8 8 C 1.38826 * 118.48661 * 0.50692 * 7 6 5 9 9 C 1.38046 * 119.28879 * 359.73047 * 8 7 6 10 10 N 1.31956 * 120.83796 * 0.02562 * 9 8 7 11 11 C 1.50698 * 109.47424 * 119.99400 * 2 1 3 12 12 O 1.21297 * 120.00131 * 114.99835 * 11 2 1 13 13 N 1.34780 * 119.99969 * 295.00608 * 11 2 1 14 14 C 1.39996 * 119.99779 * 175.48470 * 13 11 2 15 15 C 1.38923 * 120.00086 * 215.11878 * 14 13 11 16 16 C 1.38001 * 119.99750 * 180.02562 * 15 14 13 17 17 C 1.38907 * 120.00167 * 0.02562 * 16 15 14 18 18 O 1.35776 * 119.99511 * 179.97438 * 17 16 15 19 19 C 1.34821 * 117.00347 * 5.34916 * 18 17 16 20 20 H 1.08002 * 119.99841 * 354.96028 * 19 18 17 21 21 C 1.38633 * 120.00255 * 174.96494 * 19 18 17 22 22 N 1.31570 * 119.99753 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99917 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47649 * 59.99671 * 23 21 19 25 25 H 1.48503 * 109.46932 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47011 * 299.99464 * 23 21 19 27 27 C 1.38899 * 120.00470 * 0.25082 * 17 16 15 28 28 C 1.38010 * 120.00162 * 359.44886 * 27 17 16 29 29 H 1.09001 * 109.47378 * 300.00174 * 1 2 3 30 30 H 1.08996 * 109.47502 * 60.00849 * 1 2 3 31 31 H 1.09009 * 109.46927 * 180.02562 * 1 2 3 32 32 H 1.08005 * 120.44092 * 0.02562 * 6 5 4 33 33 H 1.08004 * 120.75616 * 180.23840 * 7 6 5 34 34 H 1.08002 * 120.35625 * 179.70969 * 8 7 6 35 35 H 1.08002 * 119.58259 * 180.02562 * 9 8 7 36 36 H 0.97001 * 120.00163 * 355.47758 * 13 11 2 37 37 H 1.07998 * 120.00080 * 0.02562 * 15 14 13 38 38 H 1.08003 * 119.99527 * 179.97438 * 16 15 14 39 39 H 0.97004 * 119.99801 * 180.02562 * 22 21 19 40 40 H 1.08006 * 119.99960 * 179.70488 * 27 17 16 41 41 H 1.07998 * 120.00089 * 180.27182 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2116 0.0828 -2.2741 6 6 2.6795 -0.5141 -3.4380 7 6 2.8799 0.2678 -4.5620 8 6 2.6138 1.6278 -4.4785 9 6 2.1556 2.1544 -3.2875 10 7 1.9695 1.3824 -2.2337 11 6 2.0324 -0.7103 1.2305 12 8 2.6531 -1.7467 1.1216 13 7 1.7919 -0.1939 2.4520 14 6 2.1752 -0.9003 3.5983 15 6 1.3910 -0.8439 4.7437 16 6 1.7692 -1.5398 5.8738 17 6 2.9343 -2.2961 5.8663 18 8 3.3066 -2.9803 6.9784 19 6 2.4474 -2.9738 8.0174 20 1 1.5502 -2.3743 7.9724 21 6 2.7157 -3.7364 9.1435 22 7 3.8085 -4.4671 9.1982 23 14 1.5249 -3.7279 10.5827 24 1 0.1966 -4.2127 10.1292 25 1 2.0372 -4.6192 11.6543 26 1 1.3940 -2.3453 11.1086 27 6 3.7215 -2.3479 4.7230 28 6 3.3402 -1.6571 3.5908 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 2.8801 -1.5750 -3.4665 33 1 3.2392 -0.1693 -5.4819 34 1 2.7641 2.2670 -5.3360 35 1 1.9467 3.2117 -3.2174 36 1 1.3533 0.6671 2.5369 37 1 0.4854 -0.2556 4.7496 38 1 1.1597 -1.4956 6.7643 39 1 3.9960 -5.0010 9.9860 40 1 4.6298 -2.9322 4.7188 41 1 3.9499 -1.7009 2.7005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361440368.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:05 Heat of formation + Delta-G solvation = -48.099136 kcal Electronic energy + Delta-G solvation = -26034.905817 eV Core-core repulsion = 22073.726695 eV Total energy + Delta-G solvation = -3961.179123 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.99710 -41.31766 -40.42756 -39.00474 -38.00584 -35.58928 -34.22274 -33.47901 -33.12350 -31.90273 -31.01453 -29.46095 -27.37145 -25.98876 -24.63275 -24.15600 -23.84348 -22.80983 -21.49423 -19.92830 -19.64177 -19.05923 -18.82704 -17.72480 -17.43465 -17.00055 -16.73797 -16.38361 -16.22990 -16.11557 -15.54110 -15.47805 -15.46868 -15.15774 -14.59185 -14.45952 -14.34159 -14.13071 -13.98564 -13.60677 -13.41542 -13.27338 -13.20574 -12.94213 -12.78859 -12.67711 -12.44491 -12.22057 -12.14692 -11.39859 -11.13854 -10.91264 -10.82401 -10.58943 -10.55696 -9.87402 -9.49830 -8.67027 -8.45319 -6.13198 0.20688 0.32321 0.46607 0.50944 1.36958 1.37208 1.45113 1.53560 1.54590 2.19339 2.41643 2.80602 2.83144 3.14124 3.27479 3.47739 3.50169 3.84039 3.95279 4.03770 4.06544 4.11017 4.12798 4.23655 4.37676 4.47232 4.57517 4.65532 4.68936 4.71141 4.81406 5.04806 5.06886 5.09291 5.16628 5.25990 5.30378 5.42702 5.50666 5.54407 5.65315 6.01986 6.10388 6.18309 6.42258 6.84990 6.98354 7.08308 7.78569 8.77625 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.039642 B = 0.001961 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.144635 B =14276.014564 C =14659.883547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.085 3.915 3 H 0.130 0.870 4 O -0.305 6.305 5 C 0.293 3.707 6 C -0.208 4.208 7 C -0.037 4.037 8 C -0.204 4.204 9 C 0.128 3.872 10 N -0.557 5.557 11 C 0.507 3.493 12 O -0.555 6.555 13 N -0.638 5.638 14 C 0.059 3.941 15 C -0.072 4.072 16 C -0.220 4.220 17 C 0.110 3.890 18 O -0.230 6.230 19 C -0.414 4.414 20 H 0.108 0.892 21 C -0.026 4.026 22 N -0.922 5.922 23 Si 1.021 2.979 24 H -0.257 1.257 25 H -0.275 1.275 26 H -0.254 1.254 27 C -0.192 4.192 28 C -0.075 4.075 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.140 0.860 33 H 0.171 0.829 34 H 0.171 0.829 35 H 0.189 0.811 36 H 0.428 0.572 37 H 0.165 0.835 38 H 0.136 0.864 39 H 0.272 0.728 40 H 0.110 0.890 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.032 17.784 -26.338 33.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.025 3.975 3 H 0.147 0.853 4 O -0.212 6.212 5 C 0.116 3.884 6 C -0.228 4.228 7 C -0.063 4.063 8 C -0.224 4.224 9 C -0.027 4.027 10 N -0.282 5.282 11 C 0.294 3.706 12 O -0.432 6.432 13 N -0.286 5.286 14 C -0.034 4.034 15 C -0.092 4.092 16 C -0.239 4.239 17 C 0.059 3.941 18 O -0.137 6.137 19 C -0.490 4.490 20 H 0.126 0.874 21 C -0.223 4.223 22 N -0.560 5.560 23 Si 0.840 3.160 24 H -0.181 1.181 25 H -0.200 1.200 26 H -0.178 1.178 27 C -0.212 4.212 28 C -0.095 4.095 29 H 0.125 0.875 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.158 0.842 33 H 0.188 0.812 34 H 0.189 0.811 35 H 0.206 0.794 36 H 0.268 0.732 37 H 0.182 0.818 38 H 0.154 0.846 39 H 0.081 0.919 40 H 0.129 0.871 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.576 16.864 -25.448 31.710 hybrid contribution 0.198 -0.555 0.277 0.651 sum -8.378 16.309 -25.171 31.141 Atomic orbital electron populations 1.22158 0.90129 1.03530 1.05498 1.22042 0.97122 0.97473 0.80846 0.85300 1.86352 1.80630 1.35766 1.18477 1.20137 0.93140 0.88155 0.86995 1.21346 1.06658 1.02852 0.91973 1.21848 0.92933 0.93767 0.97730 1.22420 1.03127 0.96246 1.00605 1.23056 0.92134 1.00334 0.87159 1.67221 1.22605 1.04283 1.34047 1.20969 0.79425 0.85040 0.85181 1.90734 1.40437 1.25345 1.86686 1.42901 1.60132 1.23091 1.02483 1.17349 0.95756 1.02400 0.87925 1.20864 0.98810 0.98972 0.90555 1.21156 0.98891 1.03075 1.00825 1.19868 0.94329 0.92352 0.87522 1.83963 1.44666 1.64345 1.20716 1.21859 1.04399 1.29368 0.93349 0.87433 1.26663 0.99461 0.94635 1.01554 1.70206 1.26796 1.28241 1.30783 0.84608 0.76876 0.79367 0.75117 1.18100 1.19991 1.17772 1.20242 1.02218 1.06801 0.91927 1.20828 0.95622 0.96595 0.96414 0.87510 0.89966 0.92437 0.84227 0.81164 0.81130 0.79385 0.73198 0.81796 0.84646 0.91894 0.87136 0.85428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.49 71.98 0.68 -1.79 16 2 C 0.09 1.84 2.90 29.85 0.09 1.93 16 3 H 0.13 2.36 6.98 -2.38 -0.02 2.34 16 4 O -0.31 -8.17 9.30 -70.86 -0.66 -8.83 16 5 C 0.29 6.46 7.45 84.79 0.63 7.09 16 6 C -0.21 -3.70 10.04 22.47 0.23 -3.48 16 7 C -0.04 -0.40 10.17 22.44 0.23 -0.17 16 8 C -0.20 -1.71 10.11 22.36 0.23 -1.48 16 9 C 0.13 1.46 11.17 84.63 0.95 2.41 16 10 N -0.56 -10.15 8.65 -308.95 -2.67 -12.82 16 11 C 0.51 14.53 7.02 87.66 0.62 15.14 16 12 O -0.56 -21.79 13.95 15.91 0.22 -21.57 16 13 N -0.64 -15.71 5.30 -303.36 -1.61 -17.31 16 14 C 0.06 1.99 6.30 38.16 0.24 2.23 16 15 C -0.07 -2.35 9.96 22.38 0.22 -2.13 16 16 C -0.22 -9.26 9.16 22.37 0.20 -9.06 16 17 C 0.11 5.62 6.65 22.59 0.15 5.77 16 18 O -0.23 -14.07 9.76 -22.93 -0.22 -14.29 16 19 C -0.41 -23.96 9.48 67.91 0.64 -23.32 16 20 H 0.11 5.55 5.20 -2.91 -0.02 5.53 16 21 C -0.03 -1.47 5.49 84.83 0.47 -1.00 16 22 N -0.92 -57.26 13.67 21.61 0.30 -56.96 16 23 Si 1.02 42.53 29.55 68.60 2.03 44.55 16 24 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 25 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 27 C -0.19 -9.04 9.98 22.37 0.22 -8.81 16 28 C -0.07 -3.04 8.69 22.38 0.19 -2.85 16 29 H 0.11 1.07 8.08 -2.39 -0.02 1.05 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 33 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 34 H 0.17 0.25 8.06 -2.91 -0.02 0.23 16 35 H 0.19 0.86 8.06 -2.91 -0.02 0.83 16 36 H 0.43 6.39 8.76 -92.71 -0.81 5.58 16 37 H 0.16 3.68 8.06 -2.91 -0.02 3.66 16 38 H 0.14 5.56 5.63 -2.91 -0.02 5.55 16 39 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 40 H 0.11 5.25 8.06 -2.91 -0.02 5.23 16 41 H 0.13 5.25 6.23 -2.91 -0.02 5.23 16 Total: -1.00 -83.88 359.39 3.64 -80.24 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: 0.27 Total: 26.51 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: 5.99 Total: -19.52 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -3.98 Total: -87.09 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -0.66 Total: -44.69 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -83.88 3.64 -80.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361440368.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.140 kcal (2) G-P(sol) polarization free energy of solvation -83.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds