Wall clock time and date at job start Tue Mar 31 2020 16:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46508 * 109.46646 * 2 1 4 4 C 1.35941 * 119.61643 * 270.02617 * 3 2 1 5 5 C 1.35269 * 120.82944 * 179.97438 * 4 3 2 6 6 C 1.40191 * 120.03821 * 359.78822 * 5 4 3 7 7 C 1.36833 * 119.23461 * 0.44079 * 6 5 4 8 8 N 1.40072 * 120.40653 * 179.82243 * 7 6 5 9 9 C 1.34768 * 120.00105 * 237.61484 * 8 7 6 10 10 O 1.21629 * 119.99995 * 4.82236 * 9 8 7 11 11 C 1.47504 * 120.00490 * 184.82263 * 9 8 7 12 12 C 1.39682 * 120.19274 * 359.97438 * 11 9 8 13 13 C 1.37821 * 119.91681 * 180.25394 * 12 11 9 14 14 C 1.38584 * 120.32710 * 359.44964 * 13 12 11 15 15 C 1.38032 * 120.39845 * 0.55632 * 14 13 12 16 16 C 1.38828 * 120.07176 * 359.72414 * 15 14 13 17 17 O 1.35525 * 120.16066 * 180.02562 * 16 15 14 18 18 C 1.34813 * 116.99889 * 354.45177 * 17 16 15 19 19 H 1.08002 * 119.99741 * 5.08906 * 18 17 16 20 20 C 1.38692 * 120.00309 * 185.08536 * 18 17 16 21 21 N 1.31518 * 119.99979 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00251 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47137 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47009 * 119.99714 * 22 20 18 25 25 H 1.48493 * 109.47156 * 239.99792 * 22 20 18 26 26 C 1.34678 * 119.60779 * 90.00463 * 3 2 1 27 27 O 1.22057 * 120.03691 * 359.97427 * 26 3 2 28 28 H 1.09000 * 109.46831 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47453 * 299.99266 * 1 2 3 30 30 H 1.09000 * 109.47832 * 59.99881 * 1 2 3 31 31 H 1.08996 * 109.47171 * 240.01338 * 2 1 3 32 32 H 1.08990 * 109.47701 * 120.00110 * 2 1 3 33 33 H 1.07998 * 119.58919 * 359.97438 * 4 3 2 34 34 H 1.08000 * 119.98524 * 179.97438 * 5 4 3 35 35 H 1.08001 * 120.38672 * 180.25968 * 6 5 4 36 36 H 0.97000 * 119.99442 * 57.61577 * 8 7 6 37 37 H 1.08001 * 120.04050 * 359.97438 * 12 11 9 38 38 H 1.08006 * 119.84214 * 179.72379 * 13 12 11 39 39 H 1.07990 * 119.80201 * 180.29909 * 14 13 12 40 40 H 1.07995 * 119.96005 * 179.74635 * 15 14 13 41 41 H 0.97001 * 120.00504 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2416 2.0149 -1.1818 5 6 2.6918 3.2902 -1.2104 6 6 2.9299 3.9774 -0.0120 7 6 2.7104 3.3401 1.1788 8 7 2.9438 4.0022 2.3909 9 6 3.8093 3.4853 3.2853 10 8 4.4531 2.4923 3.0047 11 6 3.9760 4.1238 4.6045 12 6 3.2391 5.2647 4.9308 13 6 3.4032 5.8597 6.1631 14 6 4.2880 5.3252 7.0860 15 6 5.0230 4.1983 6.7775 16 6 4.8751 3.5888 5.5390 17 8 5.5954 2.4820 5.2343 18 6 6.5219 2.0888 6.1312 19 1 6.6067 2.5994 7.0791 20 6 7.3660 1.0284 5.8368 21 7 7.2623 0.4062 4.6827 22 14 8.6493 0.4830 7.0798 23 1 8.5603 1.3381 8.2906 24 1 8.4045 -0.9328 7.4552 25 1 10.0027 0.6097 6.4821 26 6 2.2401 2.0087 1.1709 27 8 2.0341 1.4272 2.2242 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 -0.3635 0.5138 -0.8899 31 1 1.8933 -0.5136 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.0573 1.4936 -2.1095 34 1 2.8650 3.7803 -2.1571 35 1 3.2854 4.9971 -0.0283 36 1 2.4824 4.8327 2.5864 37 1 2.5450 5.6826 4.2167 38 1 2.8361 6.7445 6.4125 39 1 4.4063 5.7956 8.0509 40 1 5.7135 3.7901 7.5006 41 1 7.8524 -0.3356 4.4768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361619099.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:52 Heat of formation + Delta-G solvation = -18.840127 kcal Electronic energy + Delta-G solvation = -27655.644358 eV Core-core repulsion = 23695.734002 eV Total energy + Delta-G solvation = -3959.910357 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -41.29645 -39.47277 -38.07731 -36.61349 -36.27909 -35.44681 -33.29714 -32.28473 -30.82038 -30.24773 -28.89649 -28.67608 -25.36244 -24.73164 -23.92403 -22.48948 -21.98742 -21.30523 -20.01729 -18.16708 -17.82545 -17.38386 -17.19322 -16.48684 -16.12847 -15.59924 -15.14227 -14.60978 -14.41072 -14.27895 -14.18714 -14.09782 -13.90889 -13.71409 -13.14196 -12.95469 -12.79663 -12.47333 -12.42057 -12.36870 -12.06140 -11.67111 -11.64326 -11.29403 -11.27811 -11.06959 -10.87345 -10.74479 -10.40849 -10.24633 -9.75528 -9.50984 -8.87079 -8.83567 -8.76747 -8.22769 -7.49715 -7.24316 -6.38614 -3.98593 0.90720 1.78240 2.05711 2.37692 2.65937 3.15165 3.15830 3.21691 3.62836 3.79102 3.94614 3.98000 4.57455 4.59468 4.72282 4.93391 4.96117 5.09890 5.12997 5.21978 5.23039 5.29916 5.44503 5.51774 5.59447 5.73687 5.77497 5.86538 5.94956 6.05776 6.13898 6.17279 6.26491 6.58663 6.62058 6.73424 6.96157 7.04547 7.11428 7.27169 7.29099 7.34374 7.74845 7.96074 8.09709 8.30489 9.00549 9.18068 9.74103 10.75179 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.011615 B = 0.004059 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.122685 B = 6897.252306 C = 8451.548219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.088 3.912 3 N -0.497 5.497 4 C 0.116 3.884 5 C -0.217 4.217 6 C -0.056 4.056 7 C 0.053 3.947 8 N -0.677 5.677 9 C 0.559 3.441 10 O -0.476 6.476 11 C -0.222 4.222 12 C -0.038 4.038 13 C -0.230 4.230 14 C -0.051 4.051 15 C -0.237 4.237 16 C 0.191 3.809 17 O -0.123 6.123 18 C -0.403 4.403 19 H 0.095 0.905 20 C 0.044 3.956 21 N -0.832 5.832 22 Si 0.941 3.059 23 H -0.265 1.265 24 H -0.275 1.275 25 H -0.275 1.275 26 C 0.514 3.486 27 O -0.515 6.515 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.157 0.843 34 H 0.144 0.856 35 H 0.134 0.866 36 H 0.401 0.599 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.132 0.868 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.555 6.294 -11.842 17.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.034 4.034 3 N -0.210 5.210 4 C -0.011 4.011 5 C -0.241 4.241 6 C -0.080 4.080 7 C -0.045 4.045 8 N -0.329 5.329 9 C 0.349 3.651 10 O -0.347 6.347 11 C -0.227 4.227 12 C -0.057 4.057 13 C -0.249 4.249 14 C -0.070 4.070 15 C -0.256 4.256 16 C 0.131 3.869 17 O -0.021 6.021 18 C -0.479 4.479 19 H 0.112 0.888 20 C -0.164 4.164 21 N -0.463 5.463 22 Si 0.765 3.235 23 H -0.189 1.189 24 H -0.200 1.200 25 H -0.200 1.200 26 C 0.311 3.689 27 O -0.393 6.393 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.175 0.825 34 H 0.162 0.838 35 H 0.152 0.848 36 H 0.238 0.762 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.150 0.850 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.057 4.698 -11.583 16.688 hybrid contribution 0.371 0.283 0.657 0.806 sum -10.686 4.982 -10.926 16.075 Atomic orbital electron populations 1.22104 0.94472 1.02988 1.02727 1.21918 0.95459 0.80883 1.05102 1.45505 1.54624 1.14469 1.06405 1.21813 0.95953 0.93970 0.89335 1.20374 1.10379 0.94650 0.98744 1.21401 0.94640 1.00971 0.90990 1.18143 1.06087 0.93094 0.87223 1.43139 1.46334 1.26962 1.16462 1.18272 0.78917 0.84130 0.83751 1.90958 1.43173 1.23465 1.77082 1.18746 1.07528 1.01778 0.94649 1.20751 0.95766 0.93067 0.96150 1.20446 1.05513 1.03441 0.95547 1.20892 0.93887 0.94315 0.97864 1.21148 1.06302 1.00131 0.98067 1.19256 0.90086 0.86189 0.91385 1.84189 1.41717 1.32873 1.43322 1.21551 1.11764 1.16649 0.97913 0.88806 1.25395 0.97919 0.95728 0.97333 1.70157 1.35812 1.19508 1.20811 0.85660 0.79495 0.78911 0.79404 1.18944 1.20047 1.20035 1.17200 0.80508 0.87951 0.83218 1.91019 1.52241 1.66844 1.29214 0.90763 0.91699 0.92326 0.89252 0.88020 0.82516 0.83808 0.84807 0.76170 0.87087 0.87233 0.87163 0.85047 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 10.24 37.16 0.38 -1.17 16 2 C 0.09 1.01 6.05 -4.04 -0.02 0.98 16 3 N -0.50 -6.93 2.59 -119.52 -0.31 -7.23 16 4 C 0.12 1.15 10.28 -16.79 -0.17 0.98 16 5 C -0.22 -2.15 10.00 -39.91 -0.40 -2.55 16 6 C -0.06 -0.72 10.01 -39.36 -0.39 -1.11 16 7 C 0.05 0.92 5.73 -83.47 -0.48 0.44 16 8 N -0.68 -12.60 5.13 -10.67 -0.05 -12.65 16 9 C 0.56 13.60 7.08 -12.49 -0.09 13.51 16 10 O -0.48 -14.25 14.05 -23.29 -0.33 -14.58 16 11 C -0.22 -5.19 5.89 -104.82 -0.62 -5.80 16 12 C -0.04 -0.70 9.53 -39.19 -0.37 -1.08 16 13 C -0.23 -3.95 10.02 -39.61 -0.40 -4.35 16 14 C -0.05 -0.94 10.03 -39.53 -0.40 -1.34 16 15 C -0.24 -5.34 9.16 -39.44 -0.36 -5.70 16 16 C 0.19 5.00 6.66 -38.60 -0.26 4.75 16 17 O -0.12 -3.82 7.84 -21.07 -0.17 -3.99 16 18 C -0.40 -11.87 9.49 30.90 0.29 -11.57 16 19 H 0.09 2.50 5.21 -52.49 -0.27 2.23 16 20 C 0.04 1.27 5.49 -17.52 -0.10 1.17 16 21 N -0.83 -26.06 13.67 55.48 0.76 -25.30 16 22 Si 0.94 21.21 29.55 -169.99 -5.02 16.18 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 C 0.51 9.84 6.96 -15.18 -0.11 9.74 16 27 O -0.52 -12.35 15.07 -9.56 -0.14 -12.49 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.71 8.01 -51.93 -0.42 0.29 16 32 H 0.10 1.48 7.39 -51.93 -0.38 1.10 16 33 H 0.16 0.85 8.04 -52.49 -0.42 0.42 16 34 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 36 H 0.40 5.79 6.87 -40.82 -0.28 5.51 16 37 H 0.11 1.56 6.41 -52.49 -0.34 1.22 16 38 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 39 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 40 H 0.13 2.90 5.64 -52.49 -0.30 2.61 16 41 H 0.27 7.68 8.31 -40.82 -0.34 7.35 16 LS Contribution 354.38 15.07 5.34 5.34 Total: -1.00 -41.45 354.38 -7.91 -49.36 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -4.50 Total: 8.46 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -3.49 Total: -3.10 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.39 Total: -45.19 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.64 Total: -31.05 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -41.45 -7.91 -49.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361619099.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.520 kcal (2) G-P(sol) polarization free energy of solvation -41.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds