Wall clock time and date at job start Tue Mar 31 2020 16:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46508 * 109.46646 * 2 1 4 4 C 1.35941 * 119.61643 * 270.02617 * 3 2 1 5 5 C 1.35269 * 120.82944 * 179.97438 * 4 3 2 6 6 C 1.40191 * 120.03821 * 359.78822 * 5 4 3 7 7 C 1.36833 * 119.23461 * 0.44079 * 6 5 4 8 8 N 1.40072 * 120.40653 * 179.82243 * 7 6 5 9 9 C 1.34768 * 120.00105 * 237.61484 * 8 7 6 10 10 O 1.21629 * 119.99995 * 4.82236 * 9 8 7 11 11 C 1.47504 * 120.00490 * 184.82263 * 9 8 7 12 12 C 1.39682 * 120.19274 * 359.97438 * 11 9 8 13 13 C 1.37821 * 119.91681 * 180.25394 * 12 11 9 14 14 C 1.38584 * 120.32710 * 359.44964 * 13 12 11 15 15 C 1.38032 * 120.39845 * 0.55632 * 14 13 12 16 16 C 1.38828 * 120.07176 * 359.72414 * 15 14 13 17 17 O 1.35525 * 120.16066 * 180.02562 * 16 15 14 18 18 C 1.34813 * 116.99889 * 354.45177 * 17 16 15 19 19 H 1.08002 * 119.99741 * 5.08906 * 18 17 16 20 20 C 1.38692 * 120.00309 * 185.08536 * 18 17 16 21 21 N 1.31518 * 119.99979 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00251 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47137 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47009 * 119.99714 * 22 20 18 25 25 H 1.48493 * 109.47156 * 239.99792 * 22 20 18 26 26 C 1.34678 * 119.60779 * 90.00463 * 3 2 1 27 27 O 1.22057 * 120.03691 * 359.97427 * 26 3 2 28 28 H 1.09000 * 109.46831 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47453 * 299.99266 * 1 2 3 30 30 H 1.09000 * 109.47832 * 59.99881 * 1 2 3 31 31 H 1.08996 * 109.47171 * 240.01338 * 2 1 3 32 32 H 1.08990 * 109.47701 * 120.00110 * 2 1 3 33 33 H 1.07998 * 119.58919 * 359.97438 * 4 3 2 34 34 H 1.08000 * 119.98524 * 179.97438 * 5 4 3 35 35 H 1.08001 * 120.38672 * 180.25968 * 6 5 4 36 36 H 0.97000 * 119.99442 * 57.61577 * 8 7 6 37 37 H 1.08001 * 120.04050 * 359.97438 * 12 11 9 38 38 H 1.08006 * 119.84214 * 179.72379 * 13 12 11 39 39 H 1.07990 * 119.80201 * 180.29909 * 14 13 12 40 40 H 1.07995 * 119.96005 * 179.74635 * 15 14 13 41 41 H 0.97001 * 120.00504 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2416 2.0149 -1.1818 5 6 2.6918 3.2902 -1.2104 6 6 2.9299 3.9774 -0.0120 7 6 2.7104 3.3401 1.1788 8 7 2.9438 4.0022 2.3909 9 6 3.8093 3.4853 3.2853 10 8 4.4531 2.4923 3.0047 11 6 3.9760 4.1238 4.6045 12 6 3.2391 5.2647 4.9308 13 6 3.4032 5.8597 6.1631 14 6 4.2880 5.3252 7.0860 15 6 5.0230 4.1983 6.7775 16 6 4.8751 3.5888 5.5390 17 8 5.5954 2.4820 5.2343 18 6 6.5219 2.0888 6.1312 19 1 6.6067 2.5994 7.0791 20 6 7.3660 1.0284 5.8368 21 7 7.2623 0.4062 4.6827 22 14 8.6493 0.4830 7.0798 23 1 8.5603 1.3381 8.2906 24 1 8.4045 -0.9328 7.4552 25 1 10.0027 0.6097 6.4821 26 6 2.2401 2.0087 1.1709 27 8 2.0341 1.4272 2.2242 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 -0.3635 0.5138 -0.8899 31 1 1.8933 -0.5136 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.0573 1.4936 -2.1095 34 1 2.8650 3.7803 -2.1571 35 1 3.2854 4.9971 -0.0283 36 1 2.4824 4.8327 2.5864 37 1 2.5450 5.6826 4.2167 38 1 2.8361 6.7445 6.4125 39 1 4.4063 5.7956 8.0509 40 1 5.7135 3.7901 7.5006 41 1 7.8524 -0.3356 4.4768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361619099.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:49 Heat of formation + Delta-G solvation = -50.080549 kcal Electronic energy + Delta-G solvation = -27656.999045 eV Core-core repulsion = 23695.734002 eV Total energy + Delta-G solvation = -3961.265043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.49704 -41.19762 -39.79961 -38.07701 -37.90517 -36.80835 -34.64805 -34.34372 -32.28651 -31.34575 -30.60357 -29.93947 -27.42405 -25.75662 -25.36549 -23.92469 -23.10032 -22.91279 -21.64124 -19.93364 -19.53642 -18.66060 -18.46797 -17.93918 -17.61846 -16.84516 -16.51701 -16.27583 -16.03227 -15.91580 -15.79789 -15.38202 -15.32886 -15.13766 -14.82093 -14.49094 -14.26253 -14.03466 -13.58036 -13.48881 -13.36248 -13.06777 -12.98244 -12.71908 -12.68662 -12.56571 -12.36200 -12.17063 -12.11284 -11.59979 -11.44476 -11.02269 -10.87482 -10.64935 -10.22092 -9.86175 -9.07770 -8.68098 -8.46879 -6.18880 -0.18027 0.13114 0.70103 0.97282 1.28690 1.40685 1.50007 1.57485 2.12704 2.13714 2.32606 2.69138 2.86389 3.21427 3.43842 3.60234 3.87622 3.94154 4.02235 4.04538 4.08488 4.16984 4.27272 4.36715 4.42898 4.49381 4.57761 4.64548 4.87010 4.90971 4.96266 5.04033 5.08513 5.11991 5.14022 5.28518 5.45568 5.57817 5.61265 5.66094 5.79403 5.93327 6.11985 6.14879 6.61043 6.91380 7.04581 7.51949 7.78944 8.74375 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.011615 B = 0.004059 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.122685 B = 6897.252306 C = 8451.548219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.080 3.920 3 N -0.495 5.495 4 C 0.130 3.870 5 C -0.220 4.220 6 C -0.013 4.013 7 C -0.028 4.028 8 N -0.653 5.653 9 C 0.551 3.449 10 O -0.551 6.551 11 C -0.245 4.245 12 C -0.031 4.031 13 C -0.198 4.198 14 C -0.039 4.039 15 C -0.257 4.257 16 C 0.148 3.852 17 O -0.191 6.191 18 C -0.429 4.429 19 H 0.109 0.891 20 C -0.026 4.026 21 N -0.908 5.908 22 Si 1.027 2.973 23 H -0.243 1.243 24 H -0.269 1.269 25 H -0.265 1.265 26 C 0.491 3.509 27 O -0.596 6.596 28 H 0.093 0.907 29 H 0.027 0.973 30 H 0.089 0.911 31 H 0.137 0.863 32 H 0.053 0.947 33 H 0.219 0.781 34 H 0.197 0.803 35 H 0.164 0.836 36 H 0.418 0.582 37 H 0.159 0.841 38 H 0.168 0.832 39 H 0.158 0.842 40 H 0.125 0.875 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.435 10.136 -13.756 21.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.041 4.041 3 N -0.205 5.205 4 C 0.004 3.996 5 C -0.242 4.242 6 C -0.037 4.037 7 C -0.125 4.125 8 N -0.305 5.305 9 C 0.342 3.658 10 O -0.427 6.427 11 C -0.250 4.250 12 C -0.050 4.050 13 C -0.216 4.216 14 C -0.057 4.057 15 C -0.276 4.276 16 C 0.093 3.907 17 O -0.094 6.094 18 C -0.505 4.505 19 H 0.126 0.874 20 C -0.224 4.224 21 N -0.544 5.544 22 Si 0.845 3.155 23 H -0.166 1.166 24 H -0.195 1.195 25 H -0.190 1.190 26 C 0.292 3.708 27 O -0.481 6.481 28 H 0.112 0.888 29 H 0.047 0.953 30 H 0.108 0.892 31 H 0.155 0.845 32 H 0.072 0.928 33 H 0.236 0.764 34 H 0.214 0.786 35 H 0.181 0.819 36 H 0.258 0.742 37 H 0.177 0.823 38 H 0.186 0.814 39 H 0.176 0.824 40 H 0.142 0.858 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.032 8.655 -13.554 20.699 hybrid contribution 0.588 -0.531 0.988 1.266 sum -12.444 8.123 -12.567 19.462 Atomic orbital electron populations 1.22040 0.92573 1.04227 1.02342 1.22171 0.97055 0.79821 1.05051 1.45676 1.53032 1.15250 1.06570 1.22954 0.92800 0.94353 0.89484 1.21064 1.09103 0.94625 0.99432 1.21933 0.89760 1.01803 0.90199 1.18375 1.12276 0.93757 0.88084 1.42658 1.44567 1.26995 1.16298 1.18654 0.78925 0.83355 0.84898 1.90911 1.46469 1.26733 1.78614 1.19280 1.07934 1.03476 0.94337 1.21312 0.94943 0.90766 0.97957 1.21194 1.03176 1.03570 0.93680 1.21465 0.92010 0.92122 1.00062 1.21302 1.07701 1.01906 0.96710 1.20104 0.90607 0.86312 0.93694 1.84203 1.44199 1.36039 1.44963 1.22140 1.12338 1.17413 0.98591 0.87420 1.26873 1.00394 0.95430 0.99743 1.70372 1.38404 1.21379 1.24268 0.84451 0.75782 0.78558 0.76749 1.16601 1.19454 1.19022 1.17671 0.80548 0.88857 0.83743 1.90956 1.56472 1.68647 1.32067 0.88794 0.95338 0.89191 0.84462 0.92802 0.76446 0.78593 0.81880 0.74174 0.82336 0.81416 0.82441 0.85765 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 10.24 71.98 0.74 -2.08 16 2 C 0.08 1.86 6.05 86.38 0.52 2.38 16 3 N -0.49 -13.74 2.59 -650.17 -1.68 -15.42 16 4 C 0.13 2.04 10.28 83.37 0.86 2.90 16 5 C -0.22 -3.29 10.00 22.06 0.22 -3.07 16 6 C -0.01 -0.30 10.01 22.41 0.22 -0.08 16 7 C -0.03 -1.02 5.73 38.22 0.22 -0.80 16 8 N -0.65 -25.38 5.13 -305.91 -1.57 -26.95 16 9 C 0.55 29.00 7.08 86.69 0.61 29.61 16 10 O -0.55 -36.83 14.05 23.17 0.33 -36.50 16 11 C -0.25 -12.01 5.89 -19.99 -0.12 -12.13 16 12 C -0.03 -1.07 9.53 22.52 0.21 -0.86 16 13 C -0.20 -5.80 10.02 22.25 0.22 -5.58 16 14 C -0.04 -1.29 10.03 22.30 0.22 -1.07 16 15 C -0.26 -11.84 9.16 22.36 0.20 -11.64 16 16 C 0.15 8.34 6.66 22.91 0.15 8.49 16 17 O -0.19 -13.19 7.84 0.80 0.01 -13.18 16 18 C -0.43 -27.63 9.49 67.93 0.64 -26.99 16 19 H 0.11 6.20 5.21 -2.91 -0.02 6.19 16 20 C -0.03 -1.62 5.49 84.85 0.47 -1.15 16 21 N -0.91 -62.93 13.67 21.62 0.30 -62.63 16 22 Si 1.03 46.58 29.55 68.60 2.03 48.61 16 23 H -0.24 -9.92 7.11 99.48 0.71 -9.21 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 26 C 0.49 20.20 6.96 84.99 0.59 20.79 16 27 O -0.60 -32.20 15.07 8.29 0.12 -32.07 16 28 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.14 1.82 8.01 -2.39 -0.02 1.80 16 32 H 0.05 1.79 7.39 -2.39 -0.02 1.77 16 33 H 0.22 0.76 8.04 -2.91 -0.02 0.74 16 34 H 0.20 1.02 8.06 -2.91 -0.02 0.99 16 35 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16 36 H 0.42 11.89 6.87 -92.71 -0.64 11.25 16 37 H 0.16 3.80 6.41 -2.91 -0.02 3.78 16 38 H 0.17 3.20 8.06 -2.91 -0.02 3.17 16 39 H 0.16 3.86 8.06 -2.92 -0.02 3.83 16 40 H 0.12 5.75 5.64 -2.91 -0.02 5.74 16 41 H 0.27 17.02 8.31 -92.71 -0.77 16.25 16 Total: -1.00 -115.09 354.38 5.97 -109.12 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: 0.45 Total: 30.30 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 6.00 Total: -1.26 kcal Atomic # 7 Polarization: -102.05 SS G_CDS: -2.96 Total: -105.01 kcal Atomic # 8 Polarization: -82.21 SS G_CDS: 0.46 Total: -81.76 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -115.09 5.97 -109.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361619099.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.037 kcal (2) G-P(sol) polarization free energy of solvation -115.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -109.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds