Wall clock time and date at job start Tue Mar 31 2020 16:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34815 * 116.99634 * 2 1 4 4 O 1.21531 * 120.00634 * 359.97438 * 3 2 1 5 5 C 1.47137 * 119.99609 * 180.02562 * 3 2 1 6 6 C 1.38011 * 125.90870 * 180.02562 * 5 3 2 7 7 C 1.39409 * 107.45112 * 179.97438 * 6 5 3 8 8 C 1.37971 * 107.47584 * 0.02562 * 7 6 5 9 9 C 1.47289 * 125.88988 * 179.97438 * 8 7 6 10 10 O 1.21627 * 119.99807 * 7.35779 * 9 8 7 11 11 N 1.34777 * 119.99991 * 187.35545 * 9 8 7 12 12 C 1.39826 * 119.99970 * 184.74867 * 11 9 8 13 13 C 1.39314 * 119.94740 * 32.27171 * 12 11 9 14 14 C 1.38484 * 120.42568 * 179.72177 * 13 12 11 15 15 C 1.37687 * 120.32064 * 0.54770 * 14 13 12 16 16 C 1.40748 * 119.89348 * 359.73001 * 15 14 13 17 17 C 1.41403 * 120.20703 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00546 * 25.59184 * 17 16 15 19 19 C 1.39936 * 119.99871 * 205.58466 * 17 16 15 20 20 N 1.30837 * 119.99741 * 22.81424 * 19 17 16 21 21 Si 1.86798 * 120.00357 * 202.81263 * 19 17 16 22 22 H 1.48507 * 109.46841 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46967 * 120.00023 * 21 19 17 24 24 H 1.48493 * 109.47324 * 240.00397 * 21 19 17 25 25 C 1.38269 * 119.95263 * 212.54153 * 12 11 9 26 26 N 1.36714 * 108.21762 * 359.74037 * 8 7 6 27 27 C 1.46505 * 125.66312 * 180.26816 * 26 8 7 28 28 H 1.08996 * 109.47264 * 59.99938 * 1 2 3 29 29 H 1.08998 * 109.47127 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46910 * 300.00467 * 1 2 3 31 31 H 1.07999 * 126.27627 * 359.97438 * 6 5 3 32 32 H 1.07997 * 126.26536 * 179.97438 * 7 6 5 33 33 H 0.96996 * 119.99796 * 4.75657 * 11 9 8 34 34 H 1.08005 * 119.79246 * 359.96915 * 13 12 11 35 35 H 1.08001 * 119.83864 * 180.25503 * 14 13 12 36 36 H 1.08006 * 120.05309 * 179.74914 * 15 14 13 37 37 H 0.97000 * 119.99463 * 179.97438 * 20 19 17 38 38 H 1.08001 * 120.16025 * 359.97438 * 25 12 11 39 39 H 1.09000 * 109.46519 * 279.21134 * 27 26 8 40 40 H 1.09001 * 109.47415 * 39.20894 * 27 26 8 41 41 H 1.08998 * 109.47004 * 159.21508 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0640 1.2012 0.0000 4 8 1.4022 2.2205 -0.0005 5 6 3.5334 1.2782 -0.0006 6 6 4.2832 2.4369 -0.0001 7 6 5.6269 2.0653 -0.0003 8 6 5.6755 0.6865 -0.0015 9 6 6.8984 -0.1344 -0.0026 10 8 7.9856 0.3939 0.1323 11 7 6.8127 -1.4710 -0.1531 12 6 7.9624 -2.2608 -0.0551 13 6 8.9950 -1.8826 0.8003 14 6 10.1356 -2.6604 0.9094 15 6 10.2662 -3.8110 0.1646 16 6 9.2337 -4.2027 -0.7081 17 6 9.3606 -5.3834 -1.4757 18 1 9.9978 -6.1850 -1.1323 19 6 8.6606 -5.5134 -2.6804 20 7 8.2625 -4.4461 -3.3240 21 14 8.2944 -7.2105 -3.3696 22 1 8.8473 -8.2446 -2.4583 23 1 6.8251 -7.3902 -3.4880 24 1 8.9193 -7.3460 -4.7098 25 6 8.0751 -3.4128 -0.8112 26 7 4.3927 0.2136 0.0039 27 6 4.0030 -1.1986 0.0102 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.8994 3.4464 0.0003 32 1 6.4747 2.7343 -0.0005 33 1 5.9535 -1.8850 -0.3296 34 1 8.9038 -0.9791 1.3850 35 1 10.9285 -2.3604 1.5785 36 1 11.1594 -4.4122 0.2501 37 1 7.7775 -4.5362 -4.1593 38 1 7.2769 -3.7048 -1.4776 39 1 4.0621 -1.5963 -1.0029 40 1 4.6758 -1.7583 0.6601 41 1 2.9813 -1.2919 0.3782 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361666443.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:34 Heat of formation + Delta-G solvation = -37.441736 kcal Electronic energy + Delta-G solvation = -26984.130679 eV Core-core repulsion = 23023.413696 eV Total energy + Delta-G solvation = -3960.716983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -41.89255 -40.33319 -39.27822 -37.18513 -36.81008 -34.72368 -33.57704 -32.82141 -30.59447 -29.63982 -28.59054 -27.74891 -27.00301 -25.32192 -24.22130 -22.34874 -21.39588 -20.42574 -20.35429 -19.73690 -18.20635 -17.55744 -17.47910 -16.93552 -16.84844 -15.88495 -15.66932 -15.03409 -14.85189 -14.67129 -14.49632 -14.26816 -13.78395 -13.62245 -13.26819 -13.18387 -12.96441 -12.70460 -12.68145 -12.52962 -12.39009 -12.01853 -11.83019 -11.37229 -11.20244 -11.14595 -11.07545 -10.85589 -10.56087 -10.22092 -10.01321 -9.62225 -9.28321 -9.06925 -9.02477 -8.57368 -7.48178 -7.07214 -6.84274 -4.42543 0.70217 1.90301 2.16397 2.44616 2.68783 2.80115 2.87122 3.02560 3.07585 3.15909 3.37528 3.58244 3.87602 4.26786 4.47054 4.53757 4.72495 4.73768 4.83021 4.88959 5.05541 5.14631 5.19363 5.37855 5.58400 5.71486 5.88504 5.96509 6.18563 6.33128 6.52312 6.57237 6.63173 6.66645 6.79413 6.95916 6.97047 7.12564 7.38360 7.49017 7.55935 7.85117 7.92674 8.02899 8.19693 8.40112 8.59260 8.80515 8.87106 10.09857 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013313 B = 0.003212 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.737718 B = 8714.822008 C =10284.964888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.362 6.362 3 C 0.539 3.461 4 O -0.496 6.496 5 C -0.023 4.023 6 C -0.108 4.108 7 C -0.132 4.132 8 C 0.010 3.990 9 C 0.575 3.425 10 O -0.500 6.500 11 N -0.665 5.665 12 C 0.143 3.857 13 C -0.230 4.230 14 C -0.082 4.082 15 C -0.226 4.226 16 C 0.125 3.875 17 C -0.467 4.467 18 H 0.081 0.919 19 C 0.081 3.919 20 N -0.789 5.789 21 Si 0.902 3.098 22 H -0.259 1.259 23 H -0.272 1.272 24 H -0.275 1.275 25 C -0.186 4.186 26 N -0.400 5.400 27 C 0.039 3.961 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.159 0.841 32 H 0.161 0.839 33 H 0.397 0.603 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.280 0.720 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.808 5.797 4.287 16.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.279 6.279 3 C 0.384 3.616 4 O -0.383 6.383 5 C -0.136 4.136 6 C -0.134 4.134 7 C -0.157 4.157 8 C -0.108 4.108 9 C 0.361 3.639 10 O -0.374 6.374 11 N -0.312 5.312 12 C 0.052 3.948 13 C -0.251 4.251 14 C -0.101 4.101 15 C -0.246 4.246 16 C 0.122 3.878 17 C -0.497 4.497 18 H 0.099 0.901 19 C -0.138 4.138 20 N -0.413 5.413 21 Si 0.726 3.274 22 H -0.183 1.183 23 H -0.198 1.198 24 H -0.200 1.200 25 C -0.208 4.208 26 N -0.076 5.076 27 C -0.102 4.102 28 H 0.084 0.916 29 H 0.122 0.878 30 H 0.084 0.916 31 H 0.176 0.824 32 H 0.179 0.821 33 H 0.235 0.765 34 H 0.123 0.877 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.131 0.869 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.523 6.163 4.174 16.320 hybrid contribution -0.896 -0.940 -0.688 1.469 sum -15.419 5.223 3.486 16.648 Atomic orbital electron populations 1.23325 0.75537 1.03996 1.02855 1.86575 1.24079 1.32525 1.84708 1.19917 0.86809 0.81800 0.73072 1.90882 1.65324 1.35782 1.46290 1.19449 0.86487 0.88082 1.19572 1.21259 0.91909 0.96944 1.03327 1.21275 0.97123 0.92063 1.05218 1.21022 0.83093 0.94757 1.11955 1.17151 0.86980 0.81707 0.78028 1.90852 1.26569 1.71889 1.48087 1.43876 1.11115 1.06043 1.70175 1.17580 0.86856 0.92497 0.97902 1.20335 0.96436 1.02809 1.05480 1.20448 0.96133 0.95038 0.98504 1.21059 0.99268 0.99121 1.05156 1.17321 0.89155 0.91428 0.89942 1.19535 1.24773 1.01586 1.03788 0.90114 1.25894 0.93407 0.98137 0.96360 1.69889 1.27889 1.30429 1.13123 0.86367 0.78944 0.82955 0.79117 1.18281 1.19752 1.20014 1.20859 1.00122 0.97440 1.02339 1.44074 1.05077 1.06704 1.51728 1.22761 1.04708 0.77802 1.04901 0.91584 0.87779 0.91627 0.82376 0.82114 0.76458 0.87710 0.88830 0.88712 0.90945 0.86859 0.88984 0.88544 0.86657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.57 101.05 1.07 1.30 16 2 O -0.36 -3.47 7.77 -40.81 -0.32 -3.79 16 3 C 0.54 6.45 7.94 34.34 0.27 6.73 16 4 O -0.50 -6.82 16.67 -19.29 -0.32 -7.14 16 5 C -0.02 -0.29 6.87 -82.11 -0.56 -0.85 16 6 C -0.11 -1.32 10.60 -39.23 -0.42 -1.74 16 7 C -0.13 -1.78 10.61 -39.24 -0.42 -2.20 16 8 C 0.01 0.15 6.86 -82.11 -0.56 -0.41 16 9 C 0.58 10.66 7.54 -12.58 -0.09 10.57 16 10 O -0.50 -10.92 14.46 5.25 0.08 -10.84 16 11 N -0.66 -12.32 4.95 -10.92 -0.05 -12.38 16 12 C 0.14 3.25 6.29 -83.80 -0.53 2.72 16 13 C -0.23 -5.32 8.67 -39.09 -0.34 -5.66 16 14 C -0.08 -1.88 10.02 -39.69 -0.40 -2.27 16 15 C -0.23 -5.47 9.79 -38.83 -0.38 -5.85 16 16 C 0.12 3.21 5.54 -106.85 -0.59 2.62 16 17 C -0.47 -11.94 9.01 -37.74 -0.34 -12.28 16 18 H 0.08 1.99 7.94 -52.49 -0.42 1.58 16 19 C 0.08 1.94 5.01 -17.34 -0.09 1.85 16 20 N -0.79 -19.68 11.36 55.55 0.63 -19.05 16 21 Si 0.90 17.80 29.62 -169.99 -5.03 12.77 16 22 H -0.26 -5.09 7.11 56.52 0.40 -4.68 16 23 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 24 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 25 C -0.19 -4.57 8.61 -38.68 -0.33 -4.90 16 26 N -0.40 -5.06 3.17 -115.88 -0.37 -5.43 16 27 C 0.04 0.38 9.05 59.85 0.54 0.92 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.16 2.00 8.06 -52.49 -0.42 1.58 16 33 H 0.40 6.04 4.76 -40.82 -0.19 5.85 16 34 H 0.10 2.40 6.29 -52.48 -0.33 2.07 16 35 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 36 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 37 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 38 H 0.11 2.78 6.44 -52.49 -0.34 2.45 16 39 H 0.09 0.82 7.90 -51.93 -0.41 0.41 16 40 H 0.10 0.95 6.34 -51.93 -0.33 0.62 16 41 H 0.12 0.94 5.59 -51.93 -0.29 0.65 16 LS Contribution 352.48 15.07 5.31 5.31 Total: -1.00 -31.35 352.48 -7.65 -39.00 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -4.40 Total: 11.00 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -3.17 Total: -9.45 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.21 Total: -36.85 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.56 Total: -21.78 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.35 -7.65 -39.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361666443.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.558 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds