Wall clock time and date at job start Tue Mar 31 2020 16:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34815 * 116.99634 * 2 1 4 4 O 1.21531 * 120.00634 * 359.97438 * 3 2 1 5 5 C 1.47137 * 119.99609 * 180.02562 * 3 2 1 6 6 C 1.38011 * 125.90870 * 180.02562 * 5 3 2 7 7 C 1.39409 * 107.45112 * 179.97438 * 6 5 3 8 8 C 1.37971 * 107.47584 * 0.02562 * 7 6 5 9 9 C 1.47289 * 125.88988 * 179.97438 * 8 7 6 10 10 O 1.21627 * 119.99807 * 7.35779 * 9 8 7 11 11 N 1.34777 * 119.99991 * 187.35545 * 9 8 7 12 12 C 1.39826 * 119.99970 * 184.74867 * 11 9 8 13 13 C 1.39314 * 119.94740 * 32.27171 * 12 11 9 14 14 C 1.38484 * 120.42568 * 179.72177 * 13 12 11 15 15 C 1.37687 * 120.32064 * 0.54770 * 14 13 12 16 16 C 1.40748 * 119.89348 * 359.73001 * 15 14 13 17 17 C 1.41403 * 120.20703 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00546 * 25.59184 * 17 16 15 19 19 C 1.39936 * 119.99871 * 205.58466 * 17 16 15 20 20 N 1.30837 * 119.99741 * 22.81424 * 19 17 16 21 21 Si 1.86798 * 120.00357 * 202.81263 * 19 17 16 22 22 H 1.48507 * 109.46841 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46967 * 120.00023 * 21 19 17 24 24 H 1.48493 * 109.47324 * 240.00397 * 21 19 17 25 25 C 1.38269 * 119.95263 * 212.54153 * 12 11 9 26 26 N 1.36714 * 108.21762 * 359.74037 * 8 7 6 27 27 C 1.46505 * 125.66312 * 180.26816 * 26 8 7 28 28 H 1.08996 * 109.47264 * 59.99938 * 1 2 3 29 29 H 1.08998 * 109.47127 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46910 * 300.00467 * 1 2 3 31 31 H 1.07999 * 126.27627 * 359.97438 * 6 5 3 32 32 H 1.07997 * 126.26536 * 179.97438 * 7 6 5 33 33 H 0.96996 * 119.99796 * 4.75657 * 11 9 8 34 34 H 1.08005 * 119.79246 * 359.96915 * 13 12 11 35 35 H 1.08001 * 119.83864 * 180.25503 * 14 13 12 36 36 H 1.08006 * 120.05309 * 179.74914 * 15 14 13 37 37 H 0.97000 * 119.99463 * 179.97438 * 20 19 17 38 38 H 1.08001 * 120.16025 * 359.97438 * 25 12 11 39 39 H 1.09000 * 109.46519 * 279.21134 * 27 26 8 40 40 H 1.09001 * 109.47415 * 39.20894 * 27 26 8 41 41 H 1.08998 * 109.47004 * 159.21508 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0640 1.2012 0.0000 4 8 1.4022 2.2205 -0.0005 5 6 3.5334 1.2782 -0.0006 6 6 4.2832 2.4369 -0.0001 7 6 5.6269 2.0653 -0.0003 8 6 5.6755 0.6865 -0.0015 9 6 6.8984 -0.1344 -0.0026 10 8 7.9856 0.3939 0.1323 11 7 6.8127 -1.4710 -0.1531 12 6 7.9624 -2.2608 -0.0551 13 6 8.9950 -1.8826 0.8003 14 6 10.1356 -2.6604 0.9094 15 6 10.2662 -3.8110 0.1646 16 6 9.2337 -4.2027 -0.7081 17 6 9.3606 -5.3834 -1.4757 18 1 9.9978 -6.1850 -1.1323 19 6 8.6606 -5.5134 -2.6804 20 7 8.2625 -4.4461 -3.3240 21 14 8.2944 -7.2105 -3.3696 22 1 8.8473 -8.2446 -2.4583 23 1 6.8251 -7.3902 -3.4880 24 1 8.9193 -7.3460 -4.7098 25 6 8.0751 -3.4128 -0.8112 26 7 4.3927 0.2136 0.0039 27 6 4.0030 -1.1986 0.0102 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.8994 3.4464 0.0003 32 1 6.4747 2.7343 -0.0005 33 1 5.9535 -1.8850 -0.3296 34 1 8.9038 -0.9791 1.3850 35 1 10.9285 -2.3604 1.5785 36 1 11.1594 -4.4122 0.2501 37 1 7.7775 -4.5362 -4.1593 38 1 7.2769 -3.7048 -1.4776 39 1 4.0621 -1.5963 -1.0029 40 1 4.6758 -1.7583 0.6601 41 1 2.9813 -1.2919 0.3782 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361666443.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:33 Heat of formation + Delta-G solvation = -54.540655 kcal Electronic energy + Delta-G solvation = -26984.872144 eV Core-core repulsion = 23023.413696 eV Total energy + Delta-G solvation = -3961.458448 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = -0.81 seconds Orbital eigenvalues (eV) -42.95412 -41.38633 -40.66291 -38.92389 -37.68235 -36.29763 -35.29545 -33.95406 -31.83597 -31.43620 -30.06729 -28.57416 -27.91007 -27.18214 -25.38731 -23.56789 -23.15321 -21.88671 -21.49234 -21.02575 -19.33221 -19.10677 -18.71950 -17.91178 -17.71648 -17.54861 -16.85562 -16.68234 -16.50596 -16.00914 -15.72625 -15.42564 -14.92887 -14.87541 -14.59830 -14.38405 -14.24257 -13.99825 -13.88623 -13.66525 -13.43335 -13.31671 -13.06616 -12.88402 -12.78852 -12.65191 -12.24834 -12.02016 -11.91190 -11.88849 -11.77012 -11.32348 -11.03962 -10.79229 -10.03325 -9.68153 -9.37069 -8.85314 -8.64937 -6.35062 -0.37604 0.66723 0.99615 1.10028 1.23966 1.41468 1.50664 1.56929 1.58311 1.87574 1.96319 2.15866 2.22722 2.71815 3.29777 3.52988 3.66490 3.70064 4.04036 4.11848 4.27067 4.27641 4.33968 4.44347 4.54446 4.68146 4.71558 4.76833 4.80884 4.94095 5.00933 5.10631 5.11377 5.15465 5.26688 5.36234 5.60543 5.68592 5.71700 5.80537 6.01468 6.04921 6.29418 6.44907 6.49386 6.64128 6.91727 6.92613 7.05014 8.30968 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013313 B = 0.003212 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.737718 B = 8714.822008 C =10284.964888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.545 3.455 4 O -0.514 6.514 5 C -0.018 4.018 6 C -0.110 4.110 7 C -0.126 4.126 8 C -0.016 4.016 9 C 0.578 3.422 10 O -0.540 6.540 11 N -0.659 5.659 12 C 0.148 3.852 13 C -0.242 4.242 14 C -0.081 4.081 15 C -0.246 4.246 16 C 0.097 3.903 17 C -0.500 4.500 18 H 0.079 0.921 19 C 0.044 3.956 20 N -0.819 5.819 21 Si 0.978 3.022 22 H -0.258 1.258 23 H -0.261 1.261 24 H -0.270 1.270 25 C -0.203 4.203 26 N -0.394 5.394 27 C 0.031 3.969 28 H 0.066 0.934 29 H 0.135 0.865 30 H 0.067 0.933 31 H 0.179 0.821 32 H 0.167 0.833 33 H 0.411 0.589 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.289 0.711 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.875 5.382 4.060 18.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.276 6.276 3 C 0.390 3.610 4 O -0.403 6.403 5 C -0.132 4.132 6 C -0.135 4.135 7 C -0.152 4.152 8 C -0.134 4.134 9 C 0.367 3.633 10 O -0.416 6.416 11 N -0.308 5.308 12 C 0.056 3.944 13 C -0.263 4.263 14 C -0.099 4.099 15 C -0.266 4.266 16 C 0.094 3.906 17 C -0.529 4.529 18 H 0.097 0.903 19 C -0.173 4.173 20 N -0.444 5.444 21 Si 0.799 3.201 22 H -0.182 1.182 23 H -0.185 1.185 24 H -0.195 1.195 25 C -0.224 4.224 26 N -0.070 5.070 27 C -0.109 4.109 28 H 0.085 0.915 29 H 0.153 0.847 30 H 0.086 0.914 31 H 0.197 0.803 32 H 0.185 0.815 33 H 0.253 0.747 34 H 0.125 0.875 35 H 0.139 0.861 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.113 0.887 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.627 5.729 3.954 18.025 hybrid contribution -0.361 -0.733 -0.591 1.008 sum -16.988 4.996 3.364 18.024 Atomic orbital electron populations 1.23668 0.73513 1.06173 1.03045 1.86555 1.25945 1.31050 1.84001 1.19776 0.86413 0.82205 0.72607 1.90879 1.65599 1.36593 1.47233 1.19727 0.87125 0.88159 1.18210 1.21507 0.91128 0.97952 1.02927 1.21477 0.98103 0.91573 1.04025 1.20516 0.82794 0.94773 1.15361 1.17538 0.87714 0.81449 0.76609 1.90817 1.28403 1.72516 1.49878 1.43830 1.10724 1.06119 1.70118 1.17628 0.87919 0.92164 0.96713 1.20523 0.96949 1.02976 1.05856 1.20755 0.96708 0.94250 0.98230 1.21239 0.99528 1.00045 1.05798 1.17716 0.90023 0.92131 0.90695 1.19781 1.26303 1.01848 1.04933 0.90302 1.26713 0.92420 1.02075 0.96055 1.69925 1.28124 1.32625 1.13756 0.85228 0.79178 0.77546 0.78179 1.18165 1.18492 1.19477 1.20809 0.99977 0.98448 1.03202 1.44159 1.04171 1.07727 1.50900 1.22992 1.05768 0.76413 1.05698 0.91522 0.84658 0.91374 0.80350 0.81536 0.74681 0.87536 0.86077 0.87940 0.90033 0.87477 0.87929 0.88686 0.84642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.57 113.37 1.20 1.49 16 2 O -0.36 -5.94 7.77 -57.27 -0.45 -6.38 16 3 C 0.54 11.87 7.94 70.16 0.56 12.42 16 4 O -0.51 -13.15 16.67 19.73 0.33 -12.82 16 5 C -0.02 -0.41 6.87 40.65 0.28 -0.13 16 6 C -0.11 -2.49 10.60 22.50 0.24 -2.25 16 7 C -0.13 -3.30 10.61 22.49 0.24 -3.06 16 8 C -0.02 -0.48 6.86 40.70 0.28 -0.20 16 9 C 0.58 21.57 7.54 86.62 0.65 22.22 16 10 O -0.54 -23.96 14.46 -4.12 -0.06 -24.02 16 11 N -0.66 -24.59 4.95 -306.72 -1.52 -26.11 16 12 C 0.15 6.85 6.29 38.13 0.24 7.09 16 13 C -0.24 -11.35 8.67 22.59 0.20 -11.15 16 14 C -0.08 -3.70 10.02 22.20 0.22 -3.48 16 15 C -0.25 -12.14 9.79 22.75 0.22 -11.92 16 16 C 0.10 5.14 5.54 -21.31 -0.12 5.02 16 17 C -0.50 -26.02 9.01 23.46 0.21 -25.81 16 18 H 0.08 3.98 7.94 -2.91 -0.02 3.96 16 19 C 0.04 2.10 5.01 85.25 0.43 2.53 16 20 N -0.82 -41.14 11.36 21.83 0.25 -40.89 16 21 Si 0.98 36.13 29.62 68.60 2.03 38.17 16 22 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 23 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 24 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 25 C -0.20 -10.18 8.61 22.85 0.20 -9.98 16 26 N -0.39 -9.42 3.17 -520.53 -1.65 -11.07 16 27 C 0.03 0.56 9.05 127.77 1.16 1.71 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 29 H 0.14 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.18 3.24 8.06 -2.91 -0.02 3.22 16 32 H 0.17 4.06 8.06 -2.91 -0.02 4.03 16 33 H 0.41 12.45 4.76 -92.71 -0.44 12.01 16 34 H 0.11 4.93 6.29 -2.91 -0.02 4.92 16 35 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 36 H 0.10 4.73 8.06 -2.91 -0.02 4.71 16 37 H 0.29 13.01 8.30 -92.71 -0.77 12.24 16 38 H 0.11 5.40 6.44 -2.91 -0.02 5.38 16 39 H 0.10 1.66 7.90 -2.39 -0.02 1.64 16 40 H 0.09 1.76 6.34 -2.39 -0.02 1.75 16 41 H 0.14 1.88 5.59 -2.39 -0.01 1.87 16 Total: -1.00 -68.13 352.48 5.78 -62.35 By element: Atomic # 1 Polarization: 35.62 SS G_CDS: 0.65 Total: 36.27 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 6.20 Total: -15.50 kcal Atomic # 7 Polarization: -75.15 SS G_CDS: -2.92 Total: -78.07 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -0.18 Total: -43.22 kcal Atomic # 14 Polarization: 36.13 SS G_CDS: 2.03 Total: 38.17 kcal Total: -68.13 5.78 -62.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361666443.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.809 kcal (2) G-P(sol) polarization free energy of solvation -68.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.81 seconds