Wall clock time and date at job start Tue Mar 31 2020 16:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.46881 * 2 1 4 4 N 1.46503 * 109.47020 * 240.00171 * 2 1 3 5 5 C 1.34780 * 119.99773 * 84.99671 * 4 2 1 6 6 O 1.21610 * 120.00246 * 0.02562 * 5 4 2 7 7 C 1.47378 * 119.99617 * 179.97438 * 5 4 2 8 8 C 1.47019 * 127.19090 * 180.02562 * 7 5 4 9 9 C 1.34179 * 105.95312 * 179.97438 * 8 7 5 10 10 O 1.34209 * 109.12658 * 359.97438 * 9 8 7 11 11 C 1.33648 * 110.90684 * 359.76543 * 10 9 8 12 12 C 1.50695 * 109.47003 * 120.00142 * 2 1 3 13 13 O 1.21292 * 120.00138 * 119.99949 * 12 2 1 14 14 N 1.34771 * 120.00502 * 299.99705 * 12 2 1 15 15 C 1.39936 * 120.00674 * 174.88831 * 14 12 2 16 16 C 1.39294 * 119.94537 * 325.55686 * 15 14 12 17 17 C 1.38491 * 120.42716 * 179.75818 * 16 15 14 18 18 C 1.37681 * 120.31933 * 0.51144 * 17 16 15 19 19 C 1.40735 * 119.88896 * 359.74714 * 18 17 16 20 20 C 1.41411 * 120.21267 * 180.02562 * 19 18 17 21 21 H 1.07994 * 119.99908 * 25.12721 * 20 19 18 22 22 C 1.39935 * 119.99923 * 205.12867 * 20 19 18 23 23 N 1.30827 * 120.00127 * 16.78835 * 22 20 19 24 24 Si 1.86802 * 119.99838 * 196.78496 * 22 20 19 25 25 H 1.48496 * 109.47026 * 60.00155 * 24 22 20 26 26 H 1.48502 * 109.46823 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.46967 * 300.00231 * 24 22 20 28 28 C 1.38236 * 119.94803 * 145.82337 * 15 14 12 29 29 H 1.08994 * 109.47061 * 299.99849 * 1 2 3 30 30 H 1.09002 * 109.46780 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47154 * 60.00049 * 1 2 3 32 32 H 0.96997 * 120.00051 * 265.00204 * 4 2 1 33 33 H 1.07998 * 127.02114 * 359.97438 * 8 7 5 34 34 H 1.08000 * 125.43418 * 180.02562 * 9 8 7 35 35 H 1.08004 * 125.80488 * 180.26990 * 11 10 9 36 36 H 0.97004 * 119.99745 * 354.89614 * 14 12 2 37 37 H 1.08002 * 119.78558 * 0.02562 * 16 15 14 38 38 H 1.07999 * 119.83370 * 180.23721 * 17 16 15 39 39 H 1.08001 * 120.05239 * 179.76556 * 18 17 16 40 40 H 0.97000 * 120.00391 * 179.97438 * 23 22 20 41 41 H 1.07998 * 120.16352 * 359.96807 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8582 1.1619 -2.4117 7 6 2.6388 -0.7128 -3.5604 8 6 2.8393 -0.1382 -4.8987 9 6 3.2970 -1.1398 -5.6653 10 8 3.3914 -2.2539 -4.9230 11 6 3.0093 -2.0216 -3.6635 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6966 1.1191 14 7 1.7069 -0.2501 2.4545 15 6 2.0826 -0.9685 3.5951 16 6 2.1141 -2.3606 3.5609 17 6 2.4893 -3.0815 4.6823 18 6 2.8253 -2.4293 5.8474 19 6 2.7928 -1.0233 5.8985 20 6 3.1371 -0.3464 7.0914 21 1 3.7906 -0.8180 7.8105 22 6 2.6311 0.9343 7.3402 23 7 1.6036 1.3750 6.6609 24 14 3.4228 2.0146 8.6424 25 1 4.8453 2.2532 8.2897 26 1 2.7057 3.3132 8.7110 27 1 3.3469 1.3363 9.9613 28 6 2.4165 -0.2957 4.7556 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6317 -1.1527 33 1 2.6556 0.8818 -5.2027 34 1 3.5500 -1.0616 -6.7124 35 1 2.9942 -2.7473 -2.8638 36 1 1.2120 0.5793 2.5450 37 1 1.8485 -2.8811 2.6526 38 1 2.5141 -4.1605 4.6440 39 1 3.1136 -2.9959 6.7205 40 1 1.2525 2.2626 6.8336 41 1 2.3887 0.7836 4.7842 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362451219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:55 Heat of formation + Delta-G solvation = -35.385379 kcal Electronic energy + Delta-G solvation = -26403.702804 eV Core-core repulsion = 22443.074992 eV Total energy + Delta-G solvation = -3960.627813 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.82458 -40.38181 -39.14480 -37.32512 -35.04652 -34.41942 -33.42602 -33.18295 -31.28990 -29.72659 -29.56329 -28.25272 -25.34850 -25.04019 -23.51062 -21.77801 -21.40174 -21.02914 -20.26172 -19.69299 -18.86295 -17.54424 -17.08614 -16.56800 -16.42028 -15.81629 -15.56118 -15.31203 -15.11177 -14.78558 -14.69877 -14.44345 -13.79013 -13.59556 -13.26559 -13.19962 -12.82929 -12.73809 -12.61646 -12.41939 -12.35943 -11.78642 -11.62738 -11.32261 -11.15124 -10.77432 -10.69723 -10.24490 -10.12934 -10.11079 -9.80267 -9.61726 -9.38578 -9.21638 -9.10720 -9.00327 -7.44246 -7.09486 -6.75253 -4.42068 1.06809 1.78444 2.40795 2.60031 2.80352 2.81334 3.03997 3.06999 3.11445 3.17438 3.27647 3.60196 3.90034 4.29928 4.38197 4.58566 4.70690 4.83650 4.95144 5.06597 5.20690 5.35722 5.49017 5.58981 5.62326 5.67803 5.96926 6.00559 6.15716 6.22162 6.54752 6.60100 6.63043 6.80521 6.97740 7.00526 7.19606 7.32778 7.52675 7.59059 7.85208 7.96713 8.00724 8.06885 8.24909 8.44003 8.62948 8.83734 8.89285 10.14291 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.021229 B = 0.002377 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.627308 B =11776.029913 C =12403.040743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.127 3.873 3 H 0.115 0.885 4 N -0.707 5.707 5 C 0.591 3.409 6 O -0.538 6.538 7 C -0.235 4.235 8 C -0.164 4.164 9 C -0.043 4.043 10 O -0.174 6.174 11 C 0.027 3.973 12 C 0.505 3.495 13 O -0.525 6.525 14 N -0.655 5.655 15 C 0.143 3.857 16 C -0.227 4.227 17 C -0.086 4.086 18 C -0.227 4.227 19 C 0.120 3.880 20 C -0.463 4.463 21 H 0.078 0.922 22 C 0.077 3.923 23 N -0.798 5.798 24 Si 0.908 3.092 25 H -0.264 1.264 26 H -0.279 1.279 27 H -0.265 1.265 28 C -0.180 4.180 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.408 0.592 33 H 0.160 0.840 34 H 0.209 0.791 35 H 0.214 0.786 36 H 0.405 0.595 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.280 0.720 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.352 -1.796 -18.498 18.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.018 3.982 3 H 0.133 0.867 4 N -0.360 5.360 5 C 0.379 3.621 6 O -0.415 6.415 7 C -0.240 4.240 8 C -0.184 4.184 9 C -0.109 4.109 10 O -0.069 6.069 11 C -0.044 4.044 12 C 0.290 3.710 13 O -0.401 6.401 14 N -0.298 5.298 15 C 0.052 3.948 16 C -0.248 4.248 17 C -0.105 4.105 18 C -0.247 4.247 19 C 0.117 3.883 20 C -0.492 4.492 21 H 0.097 0.903 22 C -0.141 4.141 23 N -0.424 5.424 24 Si 0.733 3.267 25 H -0.189 1.189 26 H -0.204 1.204 27 H -0.190 1.190 28 C -0.201 4.201 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.245 0.755 33 H 0.178 0.822 34 H 0.226 0.774 35 H 0.230 0.770 36 H 0.240 0.760 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.091 0.909 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.148 -1.710 -18.763 18.875 hybrid contribution 0.070 0.756 0.793 1.097 sum -1.078 -0.954 -17.970 18.028 Atomic orbital electron populations 1.22133 0.92576 1.03317 1.03722 1.20777 0.95781 0.98183 0.83456 0.86702 1.45567 1.67433 1.14678 1.08354 1.17218 0.77063 0.86043 0.81784 1.90786 1.50500 1.15311 1.84947 1.21479 1.12074 0.94664 0.95767 1.22784 1.03646 1.00931 0.91010 1.23961 1.05689 0.83396 0.97818 1.83806 1.66541 1.36753 1.19789 1.24577 0.97625 0.96855 0.85347 1.20447 0.80576 0.85316 0.84663 1.90694 1.36763 1.26364 1.86279 1.43383 1.55553 1.26259 1.04647 1.17586 1.01062 0.90846 0.85342 1.20248 1.14081 0.91788 0.98675 1.20416 0.99503 0.97279 0.93269 1.21047 1.12018 0.94511 0.97114 1.17366 0.88238 0.90650 0.92031 1.19513 1.26463 0.99505 1.03753 0.90345 1.25881 0.93296 0.98070 0.96805 1.69790 1.17420 1.18214 1.36977 0.86366 0.80389 0.78867 0.81101 1.18862 1.20364 1.18999 1.21086 1.08037 0.99801 0.91209 0.90510 0.91633 0.90846 0.75548 0.82248 0.77446 0.76987 0.76013 0.88194 0.89006 0.88816 0.90893 0.85896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.39 37.16 0.35 -1.42 16 2 C 0.13 1.66 2.98 -69.08 -0.21 1.45 16 3 H 0.12 1.53 7.58 -51.93 -0.39 1.13 16 4 N -0.71 -8.73 4.94 -56.02 -0.28 -9.01 16 5 C 0.59 7.86 7.78 -12.54 -0.10 7.76 16 6 O -0.54 -8.76 16.65 5.27 0.09 -8.67 16 7 C -0.24 -2.59 6.31 -103.28 -0.65 -3.24 16 8 C -0.16 -1.57 11.01 -37.45 -0.41 -1.98 16 9 C -0.04 -0.31 12.03 29.30 0.35 0.04 16 10 O -0.17 -1.49 10.52 7.68 0.08 -1.41 16 11 C 0.03 0.23 11.61 30.08 0.35 0.58 16 12 C 0.50 8.38 6.95 -10.99 -0.08 8.31 16 13 O -0.52 -10.19 13.58 5.55 0.08 -10.12 16 14 N -0.65 -11.68 5.19 -9.91 -0.05 -11.73 16 15 C 0.14 3.22 6.25 -83.77 -0.52 2.69 16 16 C -0.23 -5.17 8.66 -39.10 -0.34 -5.50 16 17 C -0.09 -1.95 10.02 -39.69 -0.40 -2.34 16 18 C -0.23 -5.52 9.79 -38.84 -0.38 -5.90 16 19 C 0.12 3.13 5.57 -106.85 -0.59 2.54 16 20 C -0.46 -11.97 9.06 -37.74 -0.34 -12.31 16 21 H 0.08 1.96 7.90 -52.49 -0.41 1.54 16 22 C 0.08 1.87 5.16 -17.34 -0.09 1.78 16 23 N -0.80 -19.67 10.94 55.55 0.61 -19.07 16 24 Si 0.91 18.26 29.59 -169.99 -5.03 13.23 16 25 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 26 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 27 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 28 C -0.18 -4.46 8.60 -38.68 -0.33 -4.80 16 29 H 0.08 0.77 7.69 -51.93 -0.40 0.37 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.41 4.54 6.76 -40.82 -0.28 4.26 16 33 H 0.16 1.40 8.06 -52.49 -0.42 0.97 16 34 H 0.21 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.21 1.19 7.47 -52.48 -0.39 0.80 16 36 H 0.40 6.12 8.40 -40.82 -0.34 5.78 16 37 H 0.10 2.20 6.47 -52.49 -0.34 1.86 16 38 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 40 H 0.28 6.30 8.30 -40.82 -0.34 5.97 16 41 H 0.12 3.09 6.17 -52.49 -0.32 2.77 16 LS Contribution 359.14 15.07 5.41 5.41 Total: -1.00 -32.02 359.14 -7.04 -39.06 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -4.55 Total: 14.65 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -3.39 Total: -12.34 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.28 Total: -39.80 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: 0.24 Total: -20.20 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.02 -7.04 -39.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362451219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.679 kcal (2) G-P(sol) polarization free energy of solvation -32.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds