Wall clock time and date at job start Tue Mar 31 2020 16:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.46881 * 2 1 4 4 N 1.46503 * 109.47020 * 240.00171 * 2 1 3 5 5 C 1.34780 * 119.99773 * 84.99671 * 4 2 1 6 6 O 1.21610 * 120.00246 * 0.02562 * 5 4 2 7 7 C 1.47378 * 119.99617 * 179.97438 * 5 4 2 8 8 C 1.47019 * 127.19090 * 180.02562 * 7 5 4 9 9 C 1.34179 * 105.95312 * 179.97438 * 8 7 5 10 10 O 1.34209 * 109.12658 * 359.97438 * 9 8 7 11 11 C 1.33648 * 110.90684 * 359.76543 * 10 9 8 12 12 C 1.50695 * 109.47003 * 120.00142 * 2 1 3 13 13 O 1.21292 * 120.00138 * 119.99949 * 12 2 1 14 14 N 1.34771 * 120.00502 * 299.99705 * 12 2 1 15 15 C 1.39936 * 120.00674 * 174.88831 * 14 12 2 16 16 C 1.39294 * 119.94537 * 325.55686 * 15 14 12 17 17 C 1.38491 * 120.42716 * 179.75818 * 16 15 14 18 18 C 1.37681 * 120.31933 * 0.51144 * 17 16 15 19 19 C 1.40735 * 119.88896 * 359.74714 * 18 17 16 20 20 C 1.41411 * 120.21267 * 180.02562 * 19 18 17 21 21 H 1.07994 * 119.99908 * 25.12721 * 20 19 18 22 22 C 1.39935 * 119.99923 * 205.12867 * 20 19 18 23 23 N 1.30827 * 120.00127 * 16.78835 * 22 20 19 24 24 Si 1.86802 * 119.99838 * 196.78496 * 22 20 19 25 25 H 1.48496 * 109.47026 * 60.00155 * 24 22 20 26 26 H 1.48502 * 109.46823 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.46967 * 300.00231 * 24 22 20 28 28 C 1.38236 * 119.94803 * 145.82337 * 15 14 12 29 29 H 1.08994 * 109.47061 * 299.99849 * 1 2 3 30 30 H 1.09002 * 109.46780 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47154 * 60.00049 * 1 2 3 32 32 H 0.96997 * 120.00051 * 265.00204 * 4 2 1 33 33 H 1.07998 * 127.02114 * 359.97438 * 8 7 5 34 34 H 1.08000 * 125.43418 * 180.02562 * 9 8 7 35 35 H 1.08004 * 125.80488 * 180.26990 * 11 10 9 36 36 H 0.97004 * 119.99745 * 354.89614 * 14 12 2 37 37 H 1.08002 * 119.78558 * 0.02562 * 16 15 14 38 38 H 1.07999 * 119.83370 * 180.23721 * 17 16 15 39 39 H 1.08001 * 120.05239 * 179.76556 * 18 17 16 40 40 H 0.97000 * 120.00391 * 179.97438 * 23 22 20 41 41 H 1.07998 * 120.16352 * 359.96807 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8582 1.1619 -2.4117 7 6 2.6388 -0.7128 -3.5604 8 6 2.8393 -0.1382 -4.8987 9 6 3.2970 -1.1398 -5.6653 10 8 3.3914 -2.2539 -4.9230 11 6 3.0093 -2.0216 -3.6635 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6966 1.1191 14 7 1.7069 -0.2501 2.4545 15 6 2.0826 -0.9685 3.5951 16 6 2.1141 -2.3606 3.5609 17 6 2.4893 -3.0815 4.6823 18 6 2.8253 -2.4293 5.8474 19 6 2.7928 -1.0233 5.8985 20 6 3.1371 -0.3464 7.0914 21 1 3.7906 -0.8180 7.8105 22 6 2.6311 0.9343 7.3402 23 7 1.6036 1.3750 6.6609 24 14 3.4228 2.0146 8.6424 25 1 4.8453 2.2532 8.2897 26 1 2.7057 3.3132 8.7110 27 1 3.3469 1.3363 9.9613 28 6 2.4165 -0.2957 4.7556 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6317 -1.1527 33 1 2.6556 0.8818 -5.2027 34 1 3.5500 -1.0616 -6.7124 35 1 2.9942 -2.7473 -2.8638 36 1 1.2120 0.5793 2.5450 37 1 1.8485 -2.8811 2.6526 38 1 2.5141 -4.1605 4.6440 39 1 3.1136 -2.9959 6.7205 40 1 1.2525 2.2626 6.8336 41 1 2.3887 0.7836 4.7842 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362451219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:52 Heat of formation + Delta-G solvation = -56.105690 kcal Electronic energy + Delta-G solvation = -26404.601305 eV Core-core repulsion = 22443.074992 eV Total energy + Delta-G solvation = -3961.526313 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -43.49640 -41.70282 -40.38406 -39.01760 -36.26764 -35.99002 -35.14350 -33.99499 -32.28030 -31.44628 -30.55921 -29.79420 -27.19304 -26.11143 -24.58267 -23.13785 -22.59471 -22.37478 -21.23351 -21.17473 -19.77306 -19.27129 -18.30113 -17.77294 -17.17988 -17.08431 -16.99771 -16.62673 -16.44668 -16.22876 -15.89482 -15.67407 -15.04536 -14.93660 -14.54567 -14.48884 -14.20655 -13.85327 -13.78937 -13.49242 -13.45079 -13.29759 -13.06106 -12.83944 -12.77608 -12.55124 -12.31047 -11.86263 -11.58047 -11.31714 -11.20494 -10.99809 -10.88610 -10.72719 -10.34600 -9.76185 -9.32730 -8.87687 -8.55643 -6.35154 0.30196 0.76509 1.04641 1.11907 1.40305 1.48173 1.51494 1.63230 1.67943 2.05414 2.22049 2.23285 2.34833 2.75606 3.42647 3.60200 3.72187 3.76397 3.91829 4.01303 4.10812 4.46138 4.51515 4.60478 4.70993 4.72744 4.75876 4.84560 4.98453 5.07521 5.10908 5.14542 5.15325 5.22241 5.33030 5.35890 5.75727 5.83191 5.97124 6.02833 6.09110 6.31479 6.36010 6.50817 6.70510 6.93960 6.96004 7.03407 7.13104 8.33941 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.021229 B = 0.002377 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.627308 B =11776.029913 C =12403.040743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.137 3.863 3 H 0.115 0.885 4 N -0.702 5.702 5 C 0.592 3.408 6 O -0.575 6.575 7 C -0.270 4.270 8 C -0.194 4.194 9 C -0.023 4.023 10 O -0.176 6.176 11 C 0.043 3.957 12 C 0.510 3.490 13 O -0.550 6.550 14 N -0.652 5.652 15 C 0.150 3.850 16 C -0.235 4.235 17 C -0.084 4.084 18 C -0.248 4.248 19 C 0.091 3.909 20 C -0.498 4.498 21 H 0.075 0.925 22 C 0.039 3.961 23 N -0.820 5.820 24 Si 0.979 3.021 25 H -0.264 1.264 26 H -0.267 1.267 27 H -0.261 1.261 28 C -0.202 4.202 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.414 0.586 33 H 0.158 0.842 34 H 0.250 0.750 35 H 0.239 0.761 36 H 0.418 0.582 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.100 0.900 40 H 0.289 0.711 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.313 -2.158 -19.742 19.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.028 3.972 3 H 0.133 0.867 4 N -0.355 5.355 5 C 0.382 3.618 6 O -0.456 6.456 7 C -0.275 4.275 8 C -0.214 4.214 9 C -0.088 4.088 10 O -0.071 6.071 11 C -0.027 4.027 12 C 0.297 3.703 13 O -0.428 6.428 14 N -0.296 5.296 15 C 0.057 3.943 16 C -0.256 4.256 17 C -0.103 4.103 18 C -0.267 4.267 19 C 0.088 3.912 20 C -0.528 4.528 21 H 0.094 0.906 22 C -0.177 4.177 23 N -0.446 5.446 24 Si 0.800 3.200 25 H -0.189 1.189 26 H -0.191 1.191 27 H -0.185 1.185 28 C -0.224 4.224 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.253 0.747 33 H 0.176 0.824 34 H 0.266 0.734 35 H 0.255 0.745 36 H 0.255 0.745 37 H 0.128 0.872 38 H 0.139 0.861 39 H 0.118 0.882 40 H 0.099 0.901 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.127 -2.087 -20.033 20.173 hybrid contribution 0.053 0.790 1.062 1.324 sum -1.074 -1.298 -18.971 19.045 Atomic orbital electron populations 1.22108 0.90667 1.03862 1.04442 1.20697 0.97053 0.97496 0.81960 0.86715 1.45542 1.67202 1.14908 1.07894 1.17540 0.76269 0.85647 0.82362 1.90756 1.52390 1.16913 1.85559 1.21485 1.14418 0.95998 0.95581 1.22959 1.05569 1.01791 0.91054 1.24671 1.03185 0.82022 0.98909 1.83850 1.66202 1.37236 1.19793 1.25005 0.95546 0.96318 0.85862 1.20978 0.79566 0.84809 0.84941 1.90675 1.37791 1.27654 1.86673 1.43331 1.55739 1.26585 1.03985 1.17630 0.99412 0.91187 0.86045 1.20478 1.14026 0.92005 0.99058 1.20751 0.98115 0.98893 0.92546 1.21222 1.13100 0.94210 0.98207 1.17767 0.88935 0.91772 0.92760 1.19760 1.27695 1.01082 1.04248 0.90646 1.26663 0.93393 0.98686 0.98925 1.69825 1.17938 1.18863 1.37991 0.85300 0.79177 0.77234 0.78306 1.18898 1.19082 1.18500 1.21036 1.09921 0.99368 0.92064 0.89353 0.91159 0.90566 0.74746 0.82386 0.73447 0.74466 0.74516 0.87241 0.86074 0.88180 0.90053 0.86925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.39 71.98 0.68 -2.49 16 2 C 0.14 3.45 2.98 44.25 0.13 3.58 16 3 H 0.12 2.98 7.58 -2.39 -0.02 2.97 16 4 N -0.70 -16.71 4.94 -449.41 -2.22 -18.93 16 5 C 0.59 15.54 7.78 86.65 0.67 16.21 16 6 O -0.58 -18.92 16.65 -4.06 -0.07 -18.99 16 7 C -0.27 -5.72 6.31 -18.99 -0.12 -5.84 16 8 C -0.19 -3.52 11.01 23.65 0.26 -3.26 16 9 C -0.02 -0.27 12.03 66.89 0.80 0.53 16 10 O -0.18 -2.57 10.52 4.56 0.05 -2.52 16 11 C 0.04 0.66 11.61 67.39 0.78 1.44 16 12 C 0.51 16.48 6.95 87.66 0.61 17.09 16 13 O -0.55 -20.84 13.58 -3.07 -0.04 -20.88 16 14 N -0.65 -22.92 5.19 -303.66 -1.58 -24.49 16 15 C 0.15 6.76 6.25 38.10 0.24 6.99 16 16 C -0.23 -10.53 8.66 22.58 0.20 -10.34 16 17 C -0.08 -3.78 10.02 22.20 0.22 -3.56 16 18 C -0.25 -12.18 9.79 22.75 0.22 -11.96 16 19 C 0.09 4.84 5.57 -21.31 -0.12 4.72 16 20 C -0.50 -26.44 9.06 23.46 0.21 -26.23 16 21 H 0.08 3.88 7.90 -2.91 -0.02 3.85 16 22 C 0.04 1.89 5.16 85.25 0.44 2.33 16 23 N -0.82 -40.82 10.94 21.82 0.24 -40.58 16 24 Si 0.98 37.38 29.59 68.60 2.03 39.41 16 25 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 26 H -0.27 -9.56 7.11 99.48 0.71 -8.86 16 27 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 28 C -0.20 -10.25 8.60 22.85 0.20 -10.05 16 29 H 0.09 1.63 7.69 -2.39 -0.02 1.61 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.41 8.69 6.76 -92.71 -0.63 8.06 16 33 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 34 H 0.25 0.64 8.06 -2.91 -0.02 0.61 16 35 H 0.24 2.08 7.47 -2.91 -0.02 2.06 16 36 H 0.42 12.42 8.40 -92.71 -0.78 11.64 16 37 H 0.11 4.68 6.47 -2.91 -0.02 4.66 16 38 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 39 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 40 H 0.29 12.96 8.30 -92.71 -0.77 12.19 16 41 H 0.11 5.83 6.17 -2.91 -0.02 5.82 16 Total: -1.00 -70.14 359.14 3.53 -66.61 By element: Atomic # 1 Polarization: 41.49 SS G_CDS: -0.30 Total: 41.19 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: 5.43 Total: -20.81 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -3.56 Total: -84.01 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: -0.06 Total: -42.38 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 2.03 Total: 39.41 kcal Total: -70.14 3.53 -66.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362451219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.506 kcal (2) G-P(sol) polarization free energy of solvation -70.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds