Wall clock time and date at job start Tue Mar 31 2020 16:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46710 * 2 1 4 4 O 1.42894 * 109.46879 * 120.00174 * 2 1 3 5 5 C 1.35673 * 117.00454 * 269.99901 * 4 2 1 6 6 C 1.38919 * 119.68828 * 179.72917 * 5 4 2 7 7 C 1.38380 * 119.11193 * 179.75691 * 6 5 4 8 8 C 1.38831 * 118.48239 * 0.50371 * 7 6 5 9 9 C 1.38047 * 119.29239 * 359.74064 * 8 7 6 10 10 N 1.31963 * 120.83312 * 0.02562 * 9 8 7 11 11 C 1.50704 * 109.46930 * 240.00342 * 2 1 3 12 12 O 1.21283 * 119.99447 * 244.99703 * 11 2 1 13 13 N 1.34776 * 119.99798 * 65.00419 * 11 2 1 14 14 C 1.39925 * 119.99515 * 175.50111 * 13 11 2 15 15 C 1.38962 * 120.03403 * 215.13894 * 14 13 11 16 16 C 1.38161 * 120.06747 * 179.97438 * 15 14 13 17 17 C 1.38164 * 120.13591 * 359.75402 * 16 15 14 18 18 C 1.38904 * 120.07313 * 0.50236 * 17 16 15 19 19 O 1.35755 * 120.03385 * 179.77419 * 18 17 16 20 20 C 1.34825 * 116.99849 * 354.34768 * 19 18 17 21 21 H 1.07994 * 120.00417 * 5.02943 * 20 19 18 22 22 C 1.38654 * 119.99811 * 185.02830 * 20 19 18 23 23 N 1.31559 * 120.00123 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00121 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47099 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47445 * 119.99965 * 24 22 20 27 27 H 1.48500 * 109.46894 * 240.00205 * 24 22 20 28 28 C 1.38711 * 120.03659 * 35.12138 * 14 13 11 29 29 H 1.09007 * 109.46920 * 59.99559 * 1 2 3 30 30 H 1.09004 * 109.47203 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47065 * 299.99915 * 1 2 3 32 32 H 1.07997 * 120.44027 * 0.02562 * 6 5 4 33 33 H 1.08000 * 120.76022 * 180.24299 * 7 6 5 34 34 H 1.08000 * 120.35360 * 179.70703 * 8 7 6 35 35 H 1.08004 * 119.58215 * 179.97438 * 9 8 7 36 36 H 0.96998 * 120.00322 * 355.49857 * 13 11 2 37 37 H 1.08000 * 119.96935 * 359.96140 * 15 14 13 38 38 H 1.08004 * 119.92926 * 179.97438 * 16 15 14 39 39 H 1.08008 * 119.96325 * 180.24964 * 17 16 15 40 40 H 0.96998 * 120.00261 * 180.02562 * 23 22 20 41 41 H 1.07997 * 120.06884 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2116 0.0828 2.2741 6 6 2.6688 -0.5160 3.4413 7 6 2.8790 0.2676 4.5623 8 6 2.6130 1.6276 4.4787 9 6 2.1556 2.1544 3.2876 10 7 1.9693 1.3823 2.2338 11 6 2.0323 -0.7104 -1.2306 12 8 2.6530 -1.7466 -1.1215 13 7 1.7919 -0.1940 -2.4520 14 6 2.3377 -0.8016 -3.5882 15 6 2.7483 -0.0233 -4.6637 16 6 3.2878 -0.6225 -5.7857 17 6 3.4256 -1.9962 -5.8400 18 6 3.0122 -2.7800 -4.7704 19 8 3.1438 -4.1300 -4.8265 20 6 3.5731 -4.6553 -5.9916 21 1 3.8725 -4.0043 -6.7996 22 6 3.6303 -6.0313 -6.1524 23 7 3.2660 -6.8243 -5.1680 24 14 4.2258 -6.7591 -7.7665 25 1 4.5741 -5.6625 -8.7053 26 1 5.4253 -7.5985 -7.5183 27 1 3.1508 -7.5947 -8.3592 28 6 2.4699 -2.1813 -3.6419 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.8617 -1.5782 3.4721 33 1 3.2376 -0.1695 5.4825 34 1 2.7619 2.2666 5.3366 35 1 1.9469 3.2118 3.2174 36 1 1.2406 0.5988 -2.5435 37 1 2.6453 1.0510 -4.6227 38 1 3.6057 -0.0155 -6.6205 39 1 3.8514 -2.4614 -6.7168 40 1 3.3064 -7.7869 -5.2803 41 1 2.1523 -2.7883 -2.8070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001455401334.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:12 Heat of formation + Delta-G solvation = -22.403296 kcal Electronic energy + Delta-G solvation = -26346.683237 eV Core-core repulsion = 22386.618370 eV Total energy + Delta-G solvation = -3960.064867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 4.65 seconds Orbital eigenvalues (eV) -41.06011 -40.15024 -38.78643 -37.90607 -36.41513 -34.21225 -32.81080 -32.38123 -32.19053 -30.33352 -29.42179 -28.33167 -25.40769 -25.05727 -23.94033 -23.32335 -22.12935 -21.33607 -20.13656 -18.82430 -18.30132 -17.69690 -16.98903 -16.61390 -16.19371 -15.94909 -15.60934 -15.05062 -14.98058 -14.78188 -14.50011 -14.18465 -13.97385 -13.66527 -13.50968 -13.41779 -13.30982 -12.77614 -12.61606 -12.48534 -12.26886 -11.98790 -11.71832 -11.56662 -11.34772 -11.15903 -11.00595 -10.76283 -10.42435 -10.25479 -9.93136 -9.79016 -9.65989 -9.15117 -8.80490 -8.77481 -7.71277 -7.17616 -6.40031 -3.99200 0.85785 0.96011 1.96964 2.35000 2.39945 2.79446 3.15859 3.16354 3.22412 3.40732 3.49631 3.95598 4.00033 4.47605 4.54465 4.61656 4.67432 4.73963 4.81341 4.90637 4.94120 5.14600 5.32256 5.34907 5.42477 5.45984 5.63136 5.64819 5.82921 5.84785 5.89047 6.09364 6.11297 6.21901 6.39293 6.66791 6.83661 6.99750 7.04497 7.09231 7.36162 7.48687 7.52671 7.65509 7.79667 8.04756 8.28665 9.04765 9.76326 10.77928 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.020085 B = 0.002378 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.758912 B =11772.939800 C =12691.412644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.077 3.923 3 H 0.115 0.885 4 O -0.273 6.273 5 C 0.326 3.674 6 C -0.187 4.187 7 C -0.040 4.040 8 C -0.216 4.216 9 C 0.139 3.861 10 N -0.544 5.544 11 C 0.507 3.493 12 O -0.488 6.488 13 N -0.664 5.664 14 C 0.174 3.826 15 C -0.234 4.234 16 C -0.059 4.059 17 C -0.244 4.244 18 C 0.166 3.834 19 O -0.173 6.173 20 C -0.391 4.391 21 H 0.094 0.906 22 C 0.038 3.962 23 N -0.860 5.860 24 Si 0.942 3.058 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.276 1.276 28 C -0.186 4.186 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.136 0.864 35 H 0.159 0.841 36 H 0.406 0.594 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.128 0.872 40 H 0.269 0.731 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.652 19.305 15.052 24.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.017 3.983 3 H 0.133 0.867 4 O -0.179 6.179 5 C 0.147 3.853 6 C -0.208 4.208 7 C -0.066 4.066 8 C -0.236 4.236 9 C -0.017 4.017 10 N -0.268 5.268 11 C 0.291 3.709 12 O -0.359 6.359 13 N -0.310 5.310 14 C 0.081 3.919 15 C -0.255 4.255 16 C -0.078 4.078 17 C -0.264 4.264 18 C 0.112 3.888 19 O -0.076 6.076 20 C -0.468 4.468 21 H 0.111 0.889 22 C -0.166 4.166 23 N -0.495 5.495 24 Si 0.767 3.233 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.202 1.202 28 C -0.208 4.208 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.162 0.838 33 H 0.159 0.841 34 H 0.154 0.846 35 H 0.176 0.824 36 H 0.242 0.758 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.146 0.854 40 H 0.079 0.921 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.514 18.160 14.573 23.718 hybrid contribution 0.319 -0.052 -0.168 0.364 sum -4.195 18.108 14.405 23.516 Atomic orbital electron populations 1.22183 0.92223 1.04072 1.03760 1.22046 0.95818 0.97802 0.82683 0.86735 1.86419 1.79678 1.34236 1.17525 1.19918 0.91000 0.87353 0.87064 1.21149 1.05809 1.02475 0.91327 1.21438 0.93988 0.93424 0.97702 1.21979 1.05448 0.96241 0.99977 1.22409 0.92745 0.99150 0.87355 1.67254 1.22059 1.04757 1.32709 1.20302 0.80580 0.85933 0.84059 1.90831 1.37712 1.21552 1.85840 1.43183 1.51937 1.31386 1.04525 1.17152 0.97717 0.91088 0.85908 1.20265 1.11427 0.97974 0.95861 1.20502 0.96780 0.94092 0.96379 1.21188 1.10243 0.93794 1.01181 1.19137 0.91894 0.85198 0.92601 1.83998 1.73394 1.14346 1.35855 1.21399 1.43966 0.90836 0.90563 0.88913 1.25317 0.96997 0.95053 0.99255 1.70067 1.43938 1.04219 1.31243 0.85635 0.78452 0.79227 0.80012 1.19082 1.20159 1.20169 1.20187 1.08672 0.92559 0.99337 0.90242 0.90849 0.90723 0.83756 0.84083 0.84578 0.82365 0.75832 0.87301 0.86980 0.85410 0.92063 0.84837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.48 37.16 0.35 -1.27 16 2 C 0.08 0.97 2.90 -27.88 -0.08 0.89 16 3 H 0.12 1.28 6.98 -51.93 -0.36 0.91 16 4 O -0.27 -4.00 9.30 -38.58 -0.36 -4.36 16 5 C 0.33 4.02 7.45 -17.12 -0.13 3.89 16 6 C -0.19 -1.92 10.04 -39.28 -0.39 -2.32 16 7 C -0.04 -0.30 10.17 -39.31 -0.40 -0.70 16 8 C -0.22 -1.45 10.11 -39.43 -0.40 -1.84 16 9 C 0.14 1.09 11.18 -17.57 -0.20 0.90 16 10 N -0.54 -5.88 8.65 -13.33 -0.12 -5.99 16 11 C 0.51 8.35 7.02 -10.98 -0.08 8.27 16 12 O -0.49 -10.68 13.95 -14.31 -0.20 -10.88 16 13 N -0.66 -9.82 5.30 -9.88 -0.05 -9.87 16 14 C 0.17 3.31 6.30 -83.72 -0.53 2.78 16 15 C -0.23 -4.04 9.96 -39.34 -0.39 -4.43 16 16 C -0.06 -1.08 10.03 -39.64 -0.40 -1.48 16 17 C -0.24 -5.45 9.16 -39.36 -0.36 -5.81 16 18 C 0.17 4.27 6.64 -39.14 -0.26 4.01 16 19 O -0.17 -5.19 9.76 0.05 0.00 -5.19 16 20 C -0.39 -11.27 9.49 30.89 0.29 -10.97 16 21 H 0.09 2.45 5.20 -52.49 -0.27 2.18 16 22 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 23 N -0.86 -26.05 13.67 55.48 0.76 -25.29 16 24 Si 0.94 20.97 29.55 -169.99 -5.02 15.95 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 28 C -0.19 -4.39 8.64 -39.21 -0.34 -4.73 16 29 H 0.08 0.59 7.79 -51.93 -0.40 0.19 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 33 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 35 H 0.16 0.76 8.06 -52.48 -0.42 0.33 16 36 H 0.41 4.15 8.45 -40.82 -0.35 3.80 16 37 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 39 H 0.13 2.82 5.63 -52.48 -0.30 2.53 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.13 3.39 6.23 -52.49 -0.33 3.07 16 LS Contribution 358.78 15.07 5.41 5.41 Total: -1.00 -36.63 358.78 -7.51 -44.14 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -4.52 Total: 7.91 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -3.40 Total: -11.82 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.59 Total: -41.16 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.56 Total: -20.43 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.63 -7.51 -44.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001455401334.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.740 kcal (2) G-P(sol) polarization free energy of solvation -36.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.65 seconds