Wall clock time and date at job start Tue Mar 31 2020 16:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46710 * 2 1 4 4 O 1.42894 * 109.46879 * 120.00174 * 2 1 3 5 5 C 1.35673 * 117.00454 * 269.99901 * 4 2 1 6 6 C 1.38919 * 119.68828 * 179.72917 * 5 4 2 7 7 C 1.38380 * 119.11193 * 179.75691 * 6 5 4 8 8 C 1.38831 * 118.48239 * 0.50371 * 7 6 5 9 9 C 1.38047 * 119.29239 * 359.74064 * 8 7 6 10 10 N 1.31963 * 120.83312 * 0.02562 * 9 8 7 11 11 C 1.50704 * 109.46930 * 240.00342 * 2 1 3 12 12 O 1.21283 * 119.99447 * 244.99703 * 11 2 1 13 13 N 1.34776 * 119.99798 * 65.00419 * 11 2 1 14 14 C 1.39925 * 119.99515 * 175.50111 * 13 11 2 15 15 C 1.38962 * 120.03403 * 215.13894 * 14 13 11 16 16 C 1.38161 * 120.06747 * 179.97438 * 15 14 13 17 17 C 1.38164 * 120.13591 * 359.75402 * 16 15 14 18 18 C 1.38904 * 120.07313 * 0.50236 * 17 16 15 19 19 O 1.35755 * 120.03385 * 179.77419 * 18 17 16 20 20 C 1.34825 * 116.99849 * 354.34768 * 19 18 17 21 21 H 1.07994 * 120.00417 * 5.02943 * 20 19 18 22 22 C 1.38654 * 119.99811 * 185.02830 * 20 19 18 23 23 N 1.31559 * 120.00123 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00121 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47099 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47445 * 119.99965 * 24 22 20 27 27 H 1.48500 * 109.46894 * 240.00205 * 24 22 20 28 28 C 1.38711 * 120.03659 * 35.12138 * 14 13 11 29 29 H 1.09007 * 109.46920 * 59.99559 * 1 2 3 30 30 H 1.09004 * 109.47203 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47065 * 299.99915 * 1 2 3 32 32 H 1.07997 * 120.44027 * 0.02562 * 6 5 4 33 33 H 1.08000 * 120.76022 * 180.24299 * 7 6 5 34 34 H 1.08000 * 120.35360 * 179.70703 * 8 7 6 35 35 H 1.08004 * 119.58215 * 179.97438 * 9 8 7 36 36 H 0.96998 * 120.00322 * 355.49857 * 13 11 2 37 37 H 1.08000 * 119.96935 * 359.96140 * 15 14 13 38 38 H 1.08004 * 119.92926 * 179.97438 * 16 15 14 39 39 H 1.08008 * 119.96325 * 180.24964 * 17 16 15 40 40 H 0.96998 * 120.00261 * 180.02562 * 23 22 20 41 41 H 1.07997 * 120.06884 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2116 0.0828 2.2741 6 6 2.6688 -0.5160 3.4413 7 6 2.8790 0.2676 4.5623 8 6 2.6130 1.6276 4.4787 9 6 2.1556 2.1544 3.2876 10 7 1.9693 1.3823 2.2338 11 6 2.0323 -0.7104 -1.2306 12 8 2.6530 -1.7466 -1.1215 13 7 1.7919 -0.1940 -2.4520 14 6 2.3377 -0.8016 -3.5882 15 6 2.7483 -0.0233 -4.6637 16 6 3.2878 -0.6225 -5.7857 17 6 3.4256 -1.9962 -5.8400 18 6 3.0122 -2.7800 -4.7704 19 8 3.1438 -4.1300 -4.8265 20 6 3.5731 -4.6553 -5.9916 21 1 3.8725 -4.0043 -6.7996 22 6 3.6303 -6.0313 -6.1524 23 7 3.2660 -6.8243 -5.1680 24 14 4.2258 -6.7591 -7.7665 25 1 4.5741 -5.6625 -8.7053 26 1 5.4253 -7.5985 -7.5183 27 1 3.1508 -7.5947 -8.3592 28 6 2.4699 -2.1813 -3.6419 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.8617 -1.5782 3.4721 33 1 3.2376 -0.1695 5.4825 34 1 2.7619 2.2666 5.3366 35 1 1.9469 3.2118 3.2174 36 1 1.2406 0.5988 -2.5435 37 1 2.6453 1.0510 -4.6227 38 1 3.6057 -0.0155 -6.6205 39 1 3.8514 -2.4614 -6.7168 40 1 3.3064 -7.7869 -5.2803 41 1 2.1523 -2.7883 -2.8070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001455401334.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:09 Heat of formation + Delta-G solvation = -49.486677 kcal Electronic energy + Delta-G solvation = -26347.857661 eV Core-core repulsion = 22386.618370 eV Total energy + Delta-G solvation = -3961.239291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.06515 -41.36299 -40.41446 -39.02195 -38.09075 -35.73357 -34.29155 -33.53853 -33.26570 -31.25494 -30.96823 -29.88990 -27.37909 -26.13926 -24.74146 -24.26233 -23.53627 -22.94817 -21.49050 -20.11832 -19.56931 -19.28005 -18.52004 -17.55979 -17.15268 -17.01754 -16.77507 -16.75073 -16.42614 -16.01802 -15.69226 -15.57489 -15.46342 -15.44463 -14.59627 -14.47106 -14.28740 -14.20269 -13.99032 -13.61454 -13.44788 -13.23206 -13.02495 -12.91710 -12.79578 -12.71941 -12.38190 -12.25403 -12.09431 -11.46821 -11.32114 -10.92153 -10.80876 -10.77349 -10.60812 -9.52016 -9.39872 -8.91849 -8.47916 -6.17822 0.19084 0.30472 0.35260 0.67814 1.32403 1.34186 1.40066 1.47469 1.53888 2.16177 2.34774 2.80829 2.81636 3.12366 3.23393 3.32894 3.62261 3.78791 3.91882 4.03863 4.11158 4.12307 4.21688 4.34371 4.35750 4.39557 4.60921 4.64223 4.65354 4.71985 4.80007 5.00002 5.03996 5.06840 5.09805 5.28851 5.35787 5.40059 5.52456 5.61363 5.71694 6.01597 6.12666 6.17846 6.35428 6.82974 6.95517 7.02234 7.78414 8.76373 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.020085 B = 0.002378 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.758912 B =11772.939800 C =12691.412644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.088 3.912 3 H 0.136 0.864 4 O -0.309 6.309 5 C 0.293 3.707 6 C -0.211 4.211 7 C -0.037 4.037 8 C -0.203 4.203 9 C 0.130 3.870 10 N -0.555 5.555 11 C 0.503 3.497 12 O -0.552 6.552 13 N -0.643 5.643 14 C 0.181 3.819 15 C -0.199 4.199 16 C -0.048 4.048 17 C -0.253 4.253 18 C 0.125 3.875 19 O -0.236 6.236 20 C -0.413 4.413 21 H 0.108 0.892 22 C -0.029 4.029 23 N -0.926 5.926 24 Si 1.026 2.974 25 H -0.246 1.246 26 H -0.270 1.270 27 H -0.268 1.268 28 C -0.215 4.215 29 H 0.109 0.891 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.136 0.864 33 H 0.171 0.829 34 H 0.174 0.826 35 H 0.193 0.807 36 H 0.434 0.566 37 H 0.168 0.832 38 H 0.163 0.837 39 H 0.125 0.875 40 H 0.272 0.728 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.727 24.628 14.756 29.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.028 3.972 3 H 0.153 0.847 4 O -0.217 6.217 5 C 0.115 3.885 6 C -0.231 4.231 7 C -0.062 4.062 8 C -0.222 4.222 9 C -0.025 4.025 10 N -0.279 5.279 11 C 0.290 3.710 12 O -0.428 6.428 13 N -0.292 5.292 14 C 0.086 3.914 15 C -0.220 4.220 16 C -0.066 4.066 17 C -0.272 4.272 18 C 0.074 3.926 19 O -0.143 6.143 20 C -0.489 4.489 21 H 0.125 0.875 22 C -0.226 4.226 23 N -0.564 5.564 24 Si 0.844 3.156 25 H -0.169 1.169 26 H -0.195 1.195 27 H -0.193 1.193 28 C -0.236 4.236 29 H 0.128 0.872 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.153 0.847 33 H 0.188 0.812 34 H 0.191 0.809 35 H 0.210 0.790 36 H 0.274 0.726 37 H 0.186 0.814 38 H 0.181 0.819 39 H 0.143 0.857 40 H 0.081 0.919 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.631 23.608 14.292 27.983 hybrid contribution 0.294 -1.280 0.173 1.325 sum -4.336 22.328 14.464 26.955 Atomic orbital electron populations 1.22190 0.89994 1.03464 1.05816 1.22068 0.97178 0.97456 0.80519 0.84651 1.86370 1.80658 1.35991 1.18632 1.20128 0.93261 0.88261 0.86832 1.21345 1.06938 1.02713 0.92132 1.21847 0.92884 0.93864 0.97621 1.22435 1.03039 0.96095 1.00676 1.23106 0.91979 1.00388 0.87062 1.67220 1.22481 1.04069 1.34151 1.21202 0.79165 0.85085 0.85516 1.90823 1.40623 1.24528 1.86784 1.43051 1.51553 1.31641 1.02987 1.17321 0.96738 0.89532 0.87761 1.20922 1.06937 1.00539 0.93577 1.21069 0.94942 0.92447 0.98153 1.21351 1.10266 0.95677 0.99936 1.19682 0.93800 0.84461 0.94657 1.83967 1.76342 1.16882 1.37108 1.21977 1.44256 0.91753 0.90936 0.87450 1.26761 0.96952 0.95138 1.03744 1.70239 1.47116 1.04627 1.34427 0.84442 0.77953 0.78570 0.74616 1.16850 1.19489 1.19258 1.20198 1.10536 0.94793 0.98099 0.87220 0.92797 0.89497 0.84654 0.81179 0.80899 0.79028 0.72552 0.81427 0.81931 0.85748 0.91878 0.88472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.48 71.98 0.68 -2.26 16 2 C 0.09 2.20 2.90 29.85 0.09 2.29 16 3 H 0.14 2.78 6.98 -2.39 -0.02 2.76 16 4 O -0.31 -9.58 9.30 -70.91 -0.66 -10.24 16 5 C 0.29 7.34 7.45 84.79 0.63 7.97 16 6 C -0.21 -4.44 10.04 22.47 0.23 -4.21 16 7 C -0.04 -0.48 10.17 22.45 0.23 -0.25 16 8 C -0.20 -2.00 10.11 22.37 0.23 -1.78 16 9 C 0.13 1.64 11.18 84.63 0.95 2.59 16 10 N -0.56 -11.13 8.65 -308.95 -2.67 -13.81 16 11 C 0.50 16.97 7.02 87.66 0.62 17.58 16 12 O -0.55 -26.13 13.95 15.95 0.22 -25.90 16 13 N -0.64 -18.00 5.30 -303.56 -1.61 -19.60 16 14 C 0.18 6.66 6.30 38.14 0.24 6.90 16 15 C -0.20 -5.94 9.96 22.42 0.22 -5.71 16 16 C -0.05 -1.57 10.03 22.23 0.22 -1.35 16 17 C -0.25 -11.27 9.16 22.41 0.21 -11.07 16 18 C 0.13 6.82 6.64 22.56 0.15 6.97 16 19 O -0.24 -15.49 9.76 -22.74 -0.22 -15.71 16 20 C -0.41 -25.32 9.49 67.92 0.64 -24.68 16 21 H 0.11 5.92 5.20 -2.91 -0.02 5.90 16 22 C -0.03 -1.75 5.49 84.83 0.47 -1.28 16 23 N -0.93 -60.32 13.67 21.61 0.30 -60.03 16 24 Si 1.03 44.56 29.55 68.60 2.03 46.58 16 25 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 28 C -0.21 -10.75 8.64 22.51 0.19 -10.56 16 29 H 0.11 1.32 7.79 -2.38 -0.02 1.30 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 33 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 34 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 35 H 0.19 1.00 8.06 -2.91 -0.02 0.97 16 36 H 0.43 7.16 8.45 -92.71 -0.78 6.37 16 37 H 0.17 3.20 8.06 -2.91 -0.02 3.18 16 38 H 0.16 3.81 8.06 -2.91 -0.02 3.78 16 39 H 0.12 5.54 5.63 -2.91 -0.02 5.52 16 40 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 41 H 0.10 5.52 6.23 -2.91 -0.02 5.50 16 Total: -1.00 -93.44 358.78 3.67 -89.77 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: 0.30 Total: 27.78 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: 5.99 Total: -18.84 kcal Atomic # 7 Polarization: -89.45 SS G_CDS: -3.98 Total: -93.44 kcal Atomic # 8 Polarization: -51.19 SS G_CDS: -0.66 Total: -51.85 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -93.44 3.67 -89.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001455401334.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.283 kcal (2) G-P(sol) polarization free energy of solvation -93.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds