Wall clock time and date at job start Tue Mar 31 2020 16:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47209 * 2 1 4 4 C 1.50704 * 109.47195 * 239.99928 * 2 1 3 5 5 C 1.33082 * 120.00036 * 89.67087 * 4 2 1 6 6 C 1.46951 * 120.00158 * 351.84989 * 5 4 2 7 7 O 1.21534 * 119.99723 * 1.95432 * 6 5 4 8 8 O 1.34798 * 120.00161 * 181.95246 * 6 5 4 9 9 N 1.46503 * 109.47040 * 119.99993 * 2 1 3 10 10 C 1.34779 * 119.99860 * 277.37086 * 9 2 1 11 11 O 1.21670 * 119.99688 * 4.78728 * 10 9 2 12 12 C 1.46880 * 119.99922 * 184.78684 * 10 9 2 13 13 C 1.36132 * 125.43763 * 177.73816 * 12 10 9 14 14 C 1.41696 * 107.74964 * 180.25540 * 13 12 10 15 15 C 1.40020 * 133.35180 * 179.80646 * 14 13 12 16 16 C 1.36577 * 119.83401 * 179.97438 * 15 14 13 17 17 C 1.38861 * 120.59643 * 359.95390 * 16 15 14 18 18 C 1.37837 * 120.63376 * 0.02562 * 17 16 15 19 19 C 1.39082 * 119.81863 * 0.02562 * 18 17 16 20 20 N 1.37836 * 133.16788 * 180.02562 * 19 18 17 21 21 C 1.36888 * 125.61899 * 359.97438 * 20 19 18 22 22 H 1.08007 * 120.00263 * 224.94535 * 21 20 19 23 23 C 1.39011 * 120.00004 * 44.95050 * 21 20 19 24 24 N 1.31346 * 120.00319 * 188.29796 * 23 21 20 25 25 Si 1.86806 * 119.99755 * 8.29883 * 23 21 20 26 26 H 1.48497 * 109.46915 * 264.39048 * 25 23 21 27 27 H 1.48501 * 109.46896 * 24.39102 * 25 23 21 28 28 H 1.48505 * 109.46990 * 144.38842 * 25 23 21 29 29 H 1.08991 * 109.46839 * 305.31269 * 1 2 3 30 30 H 1.09006 * 109.46514 * 65.31297 * 1 2 3 31 31 H 1.09001 * 109.46875 * 185.30771 * 1 2 3 32 32 H 1.07996 * 119.99766 * 269.66416 * 4 2 1 33 33 H 1.07999 * 120.00095 * 171.85634 * 5 4 2 34 34 H 0.96697 * 116.99918 * 179.97438 * 8 6 5 35 35 H 0.97000 * 120.00141 * 97.37763 * 9 2 1 36 36 H 1.07998 * 126.12284 * 359.97130 * 13 12 10 37 37 H 1.08002 * 120.08466 * 359.93963 * 15 14 13 38 38 H 1.07991 * 119.70242 * 179.97438 * 16 15 14 39 39 H 1.07996 * 119.68165 * 180.02562 * 17 16 15 40 40 H 1.08004 * 120.09485 * 179.97438 * 18 17 16 41 41 H 0.96996 * 120.00190 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 2.2479 -0.0271 -2.3520 6 6 1.8298 1.3783 -2.4479 7 8 1.3193 1.9271 -1.4912 8 8 2.0124 2.0589 -3.5971 9 7 2.0183 -0.6906 1.1962 10 6 2.1018 -0.0307 2.3684 11 8 1.6906 1.1111 2.4543 12 6 2.6890 -0.6901 3.5422 13 6 2.8675 -0.1156 4.7634 14 6 3.4660 -1.0803 5.6113 15 6 3.8776 -1.0606 6.9495 16 6 4.4362 -2.1762 7.5051 17 6 4.5997 -3.3332 6.7548 18 6 4.2019 -3.3771 5.4358 19 6 3.6315 -2.2532 4.8477 20 7 3.1463 -1.9938 3.5840 21 6 3.1244 -2.8801 2.5410 22 1 3.4357 -2.5633 1.5564 23 6 2.7014 -4.1878 2.7489 24 7 2.8327 -5.0802 1.7941 25 14 1.9460 -4.6760 4.3862 26 1 2.9935 -5.2652 5.2584 27 1 1.3719 -3.4748 5.0441 28 1 0.8722 -5.6759 4.1574 29 1 -0.3633 0.5940 0.8385 30 1 -0.3632 0.4293 -0.9338 31 1 -0.3633 -1.0233 0.0951 32 1 2.2175 -1.7740 -1.2021 33 1 2.7301 -0.5056 -3.1916 34 1 1.7211 2.9808 -3.6123 35 1 2.2817 -1.6228 1.1445 36 1 2.6047 0.8959 5.0356 37 1 3.7542 -0.1652 7.5407 38 1 4.7533 -2.1585 8.5372 39 1 5.0428 -4.2070 7.2092 40 1 4.3336 -4.2814 4.8603 41 1 2.5378 -5.9928 1.9393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604060974.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:04 Heat of formation + Delta-G solvation = -28.788454 kcal Electronic energy + Delta-G solvation = -27800.293678 eV Core-core repulsion = 23839.951930 eV Total energy + Delta-G solvation = -3960.341749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -40.91500 -40.35422 -38.78265 -36.69324 -36.22594 -35.37497 -33.72863 -32.63945 -31.49536 -29.98265 -29.14659 -28.10826 -25.17366 -25.03148 -23.63526 -21.86243 -21.25347 -20.22433 -20.07986 -19.04441 -18.58535 -18.21602 -16.80331 -16.60305 -15.91389 -15.64245 -15.32897 -15.10137 -14.63896 -14.42165 -14.11689 -13.72301 -13.65714 -13.42373 -13.37169 -13.21105 -12.98355 -12.80169 -12.36907 -12.23311 -12.06218 -11.95459 -11.53390 -11.42810 -11.18880 -11.05396 -10.87429 -10.61854 -10.31774 -9.99015 -9.88874 -9.75162 -9.51153 -9.41446 -8.74868 -8.52293 -7.42142 -7.07530 -7.00048 -4.83235 1.02516 1.53249 2.41214 2.77623 2.86257 2.95306 3.06352 3.08955 3.17264 3.73466 3.80220 4.04215 4.15405 4.47275 4.66956 4.70685 5.08567 5.29614 5.45018 5.54437 5.59428 5.63103 5.67133 5.83278 5.95530 5.96580 6.10877 6.12406 6.15357 6.28205 6.36071 6.46202 6.54179 6.66517 6.68886 6.76503 7.03666 7.08463 7.16154 7.26891 7.43947 7.56913 7.59707 7.86151 7.97680 8.19629 8.50030 8.88561 8.92158 9.97386 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.016769 B = 0.003891 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.340795 B = 7193.652433 C = 8249.677130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.143 3.857 3 H 0.128 0.872 4 C -0.038 4.038 5 C -0.203 4.203 6 C 0.503 3.497 7 O -0.501 6.501 8 O -0.518 6.518 9 N -0.727 5.727 10 C 0.596 3.404 11 O -0.549 6.549 12 C -0.007 4.007 13 C -0.157 4.157 14 C -0.126 4.126 15 C -0.072 4.072 16 C -0.162 4.162 17 C -0.123 4.123 18 C -0.120 4.120 19 C 0.068 3.932 20 N -0.281 5.281 21 C -0.370 4.370 22 H 0.124 0.876 23 C 0.084 3.916 24 N -0.831 5.831 25 Si 0.880 3.120 26 H -0.245 1.245 27 H -0.250 1.250 28 H -0.285 1.285 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.410 0.590 35 H 0.417 0.583 36 H 0.139 0.861 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.123 0.877 41 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.470 3.950 -4.529 6.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.039 3.961 3 H 0.145 0.855 4 C -0.057 4.057 5 C -0.223 4.223 6 C 0.349 3.651 7 O -0.391 6.391 8 O -0.330 6.330 9 N -0.389 5.389 10 C 0.385 3.615 11 O -0.428 6.428 12 C -0.122 4.122 13 C -0.184 4.184 14 C -0.131 4.131 15 C -0.091 4.091 16 C -0.181 4.181 17 C -0.144 4.144 18 C -0.140 4.140 19 C -0.046 4.046 20 N 0.054 4.946 21 C -0.496 4.496 22 H 0.141 0.859 23 C -0.131 4.131 24 N -0.460 5.460 25 Si 0.705 3.295 26 H -0.170 1.170 27 H -0.174 1.174 28 H -0.212 1.212 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.268 0.732 35 H 0.264 0.736 36 H 0.157 0.843 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.140 0.860 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.815 4.029 -4.720 6.259 hybrid contribution -0.358 -0.481 0.410 0.727 sum -1.173 3.548 -4.309 5.703 Atomic orbital electron populations 1.21943 0.93854 1.01705 1.02663 1.20664 0.95326 0.98225 0.81896 0.85491 1.24268 0.87985 1.00519 0.92968 1.21782 1.08317 0.90762 1.01405 1.21450 0.75859 0.88102 0.79695 1.90925 1.40734 1.70640 1.36810 1.84614 1.78668 1.30785 1.38925 1.46978 1.66738 1.17086 1.08071 1.17136 0.77608 0.84959 0.81818 1.90749 1.49637 1.17840 1.84541 1.20235 1.08431 0.87668 0.95836 1.20490 1.07516 0.99355 0.91077 1.18011 1.06652 0.93981 0.94432 1.20203 0.98197 0.97742 0.92972 1.20368 1.04638 0.93807 0.99311 1.20588 1.02379 0.98010 0.93400 1.20291 1.01480 0.96667 0.95520 1.18393 1.02904 0.96054 0.87258 1.40290 1.38322 1.08435 1.07585 1.19181 1.48718 0.91621 0.90123 0.85941 1.25501 0.93527 0.95057 0.98968 1.69588 1.39028 1.04055 1.33299 0.86881 0.79973 0.80542 0.82140 1.17021 1.17359 1.21230 0.91287 0.92069 0.92727 0.83600 0.83748 0.73237 0.73614 0.84272 0.86999 0.87150 0.86891 0.85974 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 8.86 37.16 0.33 -1.98 16 2 C 0.14 2.40 2.02 -69.08 -0.14 2.26 16 3 H 0.13 2.41 5.14 -51.93 -0.27 2.14 16 4 C -0.04 -0.51 9.03 -36.10 -0.33 -0.84 16 5 C -0.20 -2.35 10.14 -37.85 -0.38 -2.73 16 6 C 0.50 6.28 8.17 34.26 0.28 6.56 16 7 O -0.50 -7.78 12.41 -19.29 -0.24 -8.02 16 8 O -0.52 -4.94 13.44 -40.76 -0.55 -5.49 16 9 N -0.73 -14.19 5.03 -56.17 -0.28 -14.47 16 10 C 0.60 13.27 7.71 -12.76 -0.10 13.17 16 11 O -0.55 -13.05 16.34 5.22 0.09 -12.96 16 12 C -0.01 -0.17 6.77 -82.25 -0.56 -0.73 16 13 C -0.16 -3.45 10.55 -39.02 -0.41 -3.86 16 14 C -0.13 -2.73 6.16 -106.89 -0.66 -3.39 16 15 C -0.07 -1.34 10.06 -39.51 -0.40 -1.74 16 16 C -0.16 -2.79 9.97 -39.95 -0.40 -3.19 16 17 C -0.12 -2.27 10.02 -39.50 -0.40 -2.67 16 18 C -0.12 -2.57 6.52 -39.42 -0.26 -2.82 16 19 C 0.07 1.56 4.85 -83.83 -0.41 1.16 16 20 N -0.28 -6.65 2.45 -56.08 -0.14 -6.79 16 21 C -0.37 -8.80 8.44 -15.01 -0.13 -8.93 16 22 H 0.12 2.90 6.26 -52.48 -0.33 2.57 16 23 C 0.08 2.00 5.25 -17.47 -0.09 1.91 16 24 N -0.83 -19.93 13.95 55.50 0.77 -19.16 16 25 Si 0.88 19.57 23.51 -169.99 -4.00 15.57 16 26 H -0.25 -5.14 5.51 56.52 0.31 -4.83 16 27 H -0.25 -6.05 6.71 56.52 0.38 -5.67 16 28 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 29 H 0.07 1.23 7.91 -51.93 -0.41 0.82 16 30 H 0.06 0.89 7.06 -51.93 -0.37 0.53 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.15 1.75 8.04 -52.49 -0.42 1.33 16 33 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 34 H 0.41 2.17 9.11 45.56 0.42 2.59 16 35 H 0.42 8.26 4.23 -40.82 -0.17 8.09 16 36 H 0.14 2.79 8.06 -52.49 -0.42 2.37 16 37 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 39 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.12 2.64 5.34 -52.48 -0.28 2.36 16 41 H 0.29 6.47 8.31 -40.82 -0.34 6.13 16 LS Contribution 340.80 15.07 5.14 5.14 Total: -1.00 -29.55 340.80 -6.86 -36.41 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -3.62 Total: 17.57 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -4.04 Total: -7.80 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.35 Total: -40.42 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.70 Total: -26.47 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.00 Total: 15.57 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.55 -6.86 -36.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060974.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.625 kcal (2) G-P(sol) polarization free energy of solvation -29.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds