Wall clock time and date at job start Tue Mar 31 2020 16:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47209 * 2 1 4 4 C 1.50704 * 109.47195 * 239.99928 * 2 1 3 5 5 C 1.33082 * 120.00036 * 89.67087 * 4 2 1 6 6 C 1.46951 * 120.00158 * 351.84989 * 5 4 2 7 7 O 1.21534 * 119.99723 * 1.95432 * 6 5 4 8 8 O 1.34798 * 120.00161 * 181.95246 * 6 5 4 9 9 N 1.46503 * 109.47040 * 119.99993 * 2 1 3 10 10 C 1.34779 * 119.99860 * 277.37086 * 9 2 1 11 11 O 1.21670 * 119.99688 * 4.78728 * 10 9 2 12 12 C 1.46880 * 119.99922 * 184.78684 * 10 9 2 13 13 C 1.36132 * 125.43763 * 177.73816 * 12 10 9 14 14 C 1.41696 * 107.74964 * 180.25540 * 13 12 10 15 15 C 1.40020 * 133.35180 * 179.80646 * 14 13 12 16 16 C 1.36577 * 119.83401 * 179.97438 * 15 14 13 17 17 C 1.38861 * 120.59643 * 359.95390 * 16 15 14 18 18 C 1.37837 * 120.63376 * 0.02562 * 17 16 15 19 19 C 1.39082 * 119.81863 * 0.02562 * 18 17 16 20 20 N 1.37836 * 133.16788 * 180.02562 * 19 18 17 21 21 C 1.36888 * 125.61899 * 359.97438 * 20 19 18 22 22 H 1.08007 * 120.00263 * 224.94535 * 21 20 19 23 23 C 1.39011 * 120.00004 * 44.95050 * 21 20 19 24 24 N 1.31346 * 120.00319 * 188.29796 * 23 21 20 25 25 Si 1.86806 * 119.99755 * 8.29883 * 23 21 20 26 26 H 1.48497 * 109.46915 * 264.39048 * 25 23 21 27 27 H 1.48501 * 109.46896 * 24.39102 * 25 23 21 28 28 H 1.48505 * 109.46990 * 144.38842 * 25 23 21 29 29 H 1.08991 * 109.46839 * 305.31269 * 1 2 3 30 30 H 1.09006 * 109.46514 * 65.31297 * 1 2 3 31 31 H 1.09001 * 109.46875 * 185.30771 * 1 2 3 32 32 H 1.07996 * 119.99766 * 269.66416 * 4 2 1 33 33 H 1.07999 * 120.00095 * 171.85634 * 5 4 2 34 34 H 0.96697 * 116.99918 * 179.97438 * 8 6 5 35 35 H 0.97000 * 120.00141 * 97.37763 * 9 2 1 36 36 H 1.07998 * 126.12284 * 359.97130 * 13 12 10 37 37 H 1.08002 * 120.08466 * 359.93963 * 15 14 13 38 38 H 1.07991 * 119.70242 * 179.97438 * 16 15 14 39 39 H 1.07996 * 119.68165 * 180.02562 * 17 16 15 40 40 H 1.08004 * 120.09485 * 179.97438 * 18 17 16 41 41 H 0.96996 * 120.00190 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 2.2479 -0.0271 -2.3520 6 6 1.8298 1.3783 -2.4479 7 8 1.3193 1.9271 -1.4912 8 8 2.0124 2.0589 -3.5971 9 7 2.0183 -0.6906 1.1962 10 6 2.1018 -0.0307 2.3684 11 8 1.6906 1.1111 2.4543 12 6 2.6890 -0.6901 3.5422 13 6 2.8675 -0.1156 4.7634 14 6 3.4660 -1.0803 5.6113 15 6 3.8776 -1.0606 6.9495 16 6 4.4362 -2.1762 7.5051 17 6 4.5997 -3.3332 6.7548 18 6 4.2019 -3.3771 5.4358 19 6 3.6315 -2.2532 4.8477 20 7 3.1463 -1.9938 3.5840 21 6 3.1244 -2.8801 2.5410 22 1 3.4357 -2.5633 1.5564 23 6 2.7014 -4.1878 2.7489 24 7 2.8327 -5.0802 1.7941 25 14 1.9460 -4.6760 4.3862 26 1 2.9935 -5.2652 5.2584 27 1 1.3719 -3.4748 5.0441 28 1 0.8722 -5.6759 4.1574 29 1 -0.3633 0.5940 0.8385 30 1 -0.3632 0.4293 -0.9338 31 1 -0.3633 -1.0233 0.0951 32 1 2.2175 -1.7740 -1.2021 33 1 2.7301 -0.5056 -3.1916 34 1 1.7211 2.9808 -3.6123 35 1 2.2817 -1.6228 1.1445 36 1 2.6047 0.8959 5.0356 37 1 3.7542 -0.1652 7.5407 38 1 4.7533 -2.1585 8.5372 39 1 5.0428 -4.2070 7.2092 40 1 4.3336 -4.2814 4.8603 41 1 2.5378 -5.9928 1.9393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604060974.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:00 Heat of formation + Delta-G solvation = -48.020201 kcal Electronic energy + Delta-G solvation = -27801.127629 eV Core-core repulsion = 23839.951930 eV Total energy + Delta-G solvation = -3961.175700 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 3.60 seconds Orbital eigenvalues (eV) -42.55505 -41.41385 -40.34509 -37.88558 -37.70895 -36.61860 -35.44226 -33.98770 -33.15919 -31.37688 -30.68490 -29.65770 -26.77533 -26.34668 -25.05298 -23.19171 -22.86136 -21.77108 -21.45444 -20.48994 -20.17114 -19.21309 -18.27635 -17.96137 -17.61752 -16.84804 -16.68586 -16.39430 -16.29571 -16.09039 -15.52541 -15.28066 -15.04929 -14.91773 -14.83634 -14.61274 -14.42951 -14.15821 -13.93377 -13.66572 -13.51004 -13.24390 -13.07407 -12.70882 -12.62029 -12.49651 -12.31492 -12.27751 -11.95972 -11.59098 -11.21551 -11.18852 -11.06482 -10.80219 -10.41000 -10.07276 -9.04508 -8.85758 -8.65137 -6.63891 -0.07278 0.00619 0.87787 1.08474 1.19502 1.32242 1.39191 1.85846 2.01251 2.18895 2.22883 2.32183 2.48941 2.71575 3.11276 3.54736 3.88947 3.99647 4.13609 4.24798 4.26923 4.29819 4.36003 4.45430 4.54673 4.63586 4.65755 4.77048 4.85122 4.98032 5.03181 5.09468 5.12492 5.23115 5.26200 5.35686 5.54378 5.65791 5.66887 5.67298 5.78815 5.95262 6.00974 6.35847 6.52419 6.74818 7.00489 7.18431 7.21373 8.20034 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.016769 B = 0.003891 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.340795 B = 7193.652433 C = 8249.677130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.140 3.860 3 H 0.107 0.893 4 C -0.057 4.057 5 C -0.179 4.179 6 C 0.502 3.498 7 O -0.537 6.537 8 O -0.507 6.507 9 N -0.719 5.719 10 C 0.590 3.410 11 O -0.575 6.575 12 C -0.035 4.035 13 C -0.160 4.160 14 C -0.146 4.146 15 C -0.073 4.073 16 C -0.153 4.153 17 C -0.107 4.107 18 C -0.156 4.156 19 C 0.047 3.953 20 N -0.297 5.297 21 C -0.376 4.376 22 H 0.115 0.885 23 C 0.063 3.937 24 N -0.853 5.853 25 Si 0.916 3.084 26 H -0.223 1.223 27 H -0.282 1.282 28 H -0.284 1.284 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.159 0.841 33 H 0.180 0.820 34 H 0.429 0.571 35 H 0.416 0.584 36 H 0.151 0.849 37 H 0.144 0.856 38 H 0.157 0.843 39 H 0.149 0.851 40 H 0.113 0.887 41 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.544 3.419 -3.568 4.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.037 3.963 3 H 0.124 0.876 4 C -0.075 4.075 5 C -0.198 4.198 6 C 0.350 3.650 7 O -0.429 6.429 8 O -0.321 6.321 9 N -0.378 5.378 10 C 0.379 3.621 11 O -0.456 6.456 12 C -0.148 4.148 13 C -0.188 4.188 14 C -0.151 4.151 15 C -0.092 4.092 16 C -0.172 4.172 17 C -0.126 4.126 18 C -0.176 4.176 19 C -0.066 4.066 20 N 0.036 4.964 21 C -0.502 4.502 22 H 0.132 0.868 23 C -0.149 4.149 24 N -0.483 5.483 25 Si 0.741 3.259 26 H -0.146 1.146 27 H -0.208 1.208 28 H -0.211 1.211 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.177 0.823 33 H 0.198 0.802 34 H 0.290 0.710 35 H 0.262 0.738 36 H 0.169 0.831 37 H 0.162 0.838 38 H 0.175 0.825 39 H 0.167 0.833 40 H 0.131 0.869 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.214 3.488 -3.802 5.164 hybrid contribution -0.599 -0.175 0.162 0.645 sum -0.385 3.313 -3.639 4.936 Atomic orbital electron populations 1.21851 0.93619 1.01563 1.02309 1.20723 0.95687 0.97500 0.82398 0.87568 1.24109 0.90195 1.01152 0.92086 1.22117 1.06017 0.90148 1.01519 1.21666 0.75083 0.88551 0.79729 1.90932 1.42355 1.71462 1.38196 1.84570 1.78048 1.32275 1.37163 1.46978 1.65737 1.16862 1.08256 1.17226 0.77583 0.84792 0.82507 1.90711 1.51053 1.18767 1.85039 1.20516 1.09590 0.87999 0.96723 1.20769 1.07011 0.99987 0.91001 1.18393 1.07293 0.93382 0.95988 1.20660 0.97119 0.99694 0.91700 1.20897 1.02670 0.92431 1.01184 1.21135 0.99735 0.99705 0.92066 1.20442 1.03868 0.96173 0.97089 1.18856 1.03316 0.97318 0.87122 1.40318 1.39609 1.08479 1.08005 1.19164 1.48840 0.91945 0.90271 0.86814 1.25810 0.93697 0.95083 1.00313 1.69600 1.40182 1.04502 1.34010 0.86371 0.79805 0.78943 0.80741 1.14643 1.20772 1.21072 0.93876 0.90536 0.92184 0.82328 0.80236 0.70994 0.73778 0.83103 0.83804 0.82539 0.83349 0.86877 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 8.86 71.98 0.64 -3.87 16 2 C 0.14 4.89 2.02 44.25 0.09 4.98 16 3 H 0.11 4.23 5.14 -2.39 -0.01 4.21 16 4 C -0.06 -1.48 9.03 24.53 0.22 -1.26 16 5 C -0.18 -3.83 10.14 23.40 0.24 -3.59 16 6 C 0.50 11.98 8.17 70.10 0.57 12.55 16 7 O -0.54 -16.80 12.41 19.73 0.24 -16.56 16 8 O -0.51 -8.58 13.44 -57.09 -0.77 -9.35 16 9 N -0.72 -29.44 5.03 -449.86 -2.26 -31.70 16 10 C 0.59 27.63 7.71 86.50 0.67 28.29 16 11 O -0.57 -28.72 16.34 -4.25 -0.07 -28.79 16 12 C -0.03 -1.67 6.77 39.91 0.27 -1.40 16 13 C -0.16 -7.16 10.55 22.63 0.24 -6.92 16 14 C -0.15 -6.24 6.16 -21.33 -0.13 -6.38 16 15 C -0.07 -2.48 10.06 22.31 0.22 -2.25 16 16 C -0.15 -4.56 9.97 22.03 0.22 -4.34 16 17 C -0.11 -3.53 10.02 22.32 0.22 -3.30 16 18 C -0.16 -6.47 6.52 22.38 0.15 -6.33 16 19 C 0.05 2.17 4.85 39.06 0.19 2.36 16 20 N -0.30 -14.51 2.45 -331.33 -0.81 -15.33 16 21 C -0.38 -18.48 8.44 84.09 0.71 -17.77 16 22 H 0.11 5.63 6.26 -2.91 -0.02 5.61 16 23 C 0.06 3.07 5.25 84.95 0.45 3.51 16 24 N -0.85 -41.35 13.95 21.67 0.30 -41.05 16 25 Si 0.92 40.54 23.51 68.60 1.61 42.15 16 26 H -0.22 -8.94 5.51 99.48 0.55 -8.39 16 27 H -0.28 -13.93 6.71 99.48 0.67 -13.26 16 28 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 29 H 0.04 1.63 7.91 -2.39 -0.02 1.61 16 30 H 0.08 2.27 7.06 -2.38 -0.02 2.25 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.16 3.74 8.04 -2.91 -0.02 3.72 16 33 H 0.18 2.59 8.06 -2.91 -0.02 2.56 16 34 H 0.43 3.71 9.11 -74.06 -0.67 3.03 16 35 H 0.42 17.29 4.23 -92.71 -0.39 16.90 16 36 H 0.15 6.15 8.06 -2.91 -0.02 6.13 16 37 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 38 H 0.16 3.28 8.06 -2.92 -0.02 3.26 16 39 H 0.15 3.82 8.06 -2.91 -0.02 3.79 16 40 H 0.11 4.82 5.34 -2.91 -0.02 4.80 16 41 H 0.29 13.23 8.31 -92.71 -0.77 12.46 16 Total: -1.00 -66.48 340.80 3.05 -63.43 By element: Atomic # 1 Polarization: 43.07 SS G_CDS: -0.16 Total: 42.92 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 4.96 Total: -5.72 kcal Atomic # 7 Polarization: -85.31 SS G_CDS: -2.77 Total: -88.08 kcal Atomic # 8 Polarization: -54.11 SS G_CDS: -0.59 Total: -54.70 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 1.61 Total: 42.15 kcal Total: -66.48 3.05 -63.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060974.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.410 kcal (2) G-P(sol) polarization free energy of solvation -66.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.60 seconds