Wall clock time and date at job start Tue Mar 31 2020 16:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47016 * 2 1 4 4 C 1.50705 * 109.47116 * 240.00809 * 2 1 3 5 5 C 1.33079 * 120.00187 * 124.99732 * 4 2 1 6 6 C 1.46956 * 119.99933 * 179.97438 * 5 4 2 7 7 O 1.21536 * 119.99926 * 0.02562 * 6 5 4 8 8 O 1.34796 * 120.00175 * 180.02562 * 6 5 4 9 9 N 1.46497 * 109.47199 * 120.00494 * 2 1 3 10 10 C 1.34775 * 119.99972 * 274.99559 * 9 2 1 11 11 O 1.21664 * 119.99854 * 4.69909 * 10 9 2 12 12 C 1.46889 * 120.00035 * 184.69202 * 10 9 2 13 13 C 1.36126 * 125.43867 * 173.54627 * 12 10 9 14 14 C 1.41701 * 107.74870 * 180.28250 * 13 12 10 15 15 C 1.40020 * 133.34786 * 179.78070 * 14 13 12 16 16 C 1.36577 * 119.82764 * 179.97438 * 15 14 13 17 17 C 1.38855 * 120.59915 * 359.95613 * 16 15 14 18 18 C 1.37841 * 120.63530 * 0.02696 * 17 16 15 19 19 C 1.39080 * 119.81489 * 359.97438 * 18 17 16 20 20 N 1.37841 * 133.16427 * 180.02562 * 19 18 17 21 21 C 1.36893 * 125.62090 * 359.97438 * 20 19 18 22 22 H 1.07988 * 120.00010 * 137.85406 * 21 20 19 23 23 C 1.39014 * 119.99520 * 317.85543 * 21 20 19 24 24 N 1.31345 * 120.00512 * 341.72056 * 23 21 20 25 25 Si 1.86798 * 119.99518 * 161.72704 * 23 21 20 26 26 H 1.48500 * 109.47271 * 269.99691 * 25 23 21 27 27 H 1.48502 * 109.47501 * 29.99518 * 25 23 21 28 28 H 1.48500 * 109.47161 * 149.99987 * 25 23 21 29 29 H 1.09001 * 109.47302 * 299.99621 * 1 2 3 30 30 H 1.09006 * 109.47288 * 59.99473 * 1 2 3 31 31 H 1.08999 * 109.47077 * 179.97438 * 1 2 3 32 32 H 1.08007 * 119.99449 * 304.99488 * 4 2 1 33 33 H 1.07999 * 120.00337 * 0.02562 * 5 4 2 34 34 H 0.96695 * 117.00416 * 180.02562 * 8 6 5 35 35 H 0.97000 * 120.00043 * 95.00395 * 9 2 1 36 36 H 1.08001 * 126.12303 * 0.02562 * 13 12 10 37 37 H 1.07993 * 120.08508 * 359.97438 * 15 14 13 38 38 H 1.07999 * 119.69893 * 179.97438 * 16 15 14 39 39 H 1.08001 * 119.68145 * 180.02562 * 17 16 15 40 40 H 1.08003 * 120.08974 * 179.97438 * 18 17 16 41 41 H 0.97001 * 119.99996 * 353.99751 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 6 2.8773 -0.0961 -2.0551 6 6 3.3676 -0.7889 -3.2547 7 8 3.0010 -1.9226 -3.4942 8 8 4.2239 -0.1670 -4.0896 9 7 2.0183 -0.6907 1.1961 10 6 2.1471 -0.0184 2.3571 11 8 1.7779 1.1383 2.4344 12 6 2.7331 -0.6823 3.5291 13 6 3.0291 -0.0782 4.7125 14 6 3.5811 -1.0599 5.5724 15 6 4.0645 -1.0247 6.8860 16 6 4.5471 -2.1647 7.4631 17 6 4.5624 -3.3614 6.7590 18 6 4.0916 -3.4211 5.4649 19 6 3.5953 -2.2733 4.8560 20 7 3.0681 -2.0209 3.6077 21 6 2.9090 -2.9426 2.6081 22 1 2.0038 -2.9497 2.0193 23 6 3.9127 -3.8694 2.3512 24 7 5.1313 -3.6574 2.7929 25 14 3.5282 -5.4165 1.3775 26 1 3.1121 -6.4964 2.3079 27 1 2.4286 -5.1379 0.4192 28 1 4.7384 -5.8453 0.6312 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7065 -1.7178 -1.4433 33 1 3.2034 0.9112 -1.8421 34 1 4.5184 -0.6628 -4.8658 35 1 2.2491 -1.6318 1.1524 36 1 2.8750 0.9637 4.9516 37 1 4.0559 -0.0986 7.4415 38 1 4.9199 -2.1351 8.4763 39 1 4.9470 -4.2540 7.2299 40 1 4.1080 -4.3565 4.9253 41 1 5.3521 -2.8159 3.2220 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604061000.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:16 Heat of formation + Delta-G solvation = -56.717232 kcal Electronic energy + Delta-G solvation = -27505.440148 eV Core-core repulsion = 23543.887317 eV Total energy + Delta-G solvation = -3961.552831 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.78150 -40.19442 -38.95268 -36.51231 -36.16195 -35.86118 -33.91179 -32.69796 -30.70234 -30.23198 -28.98590 -27.99156 -25.31263 -24.89652 -23.55744 -21.64973 -21.09612 -20.21236 -20.09237 -19.29574 -18.55605 -18.17898 -17.06871 -16.59727 -15.77325 -15.70683 -15.54110 -15.14065 -14.68679 -14.34177 -14.26974 -14.09900 -13.64780 -13.49198 -13.22160 -13.14219 -12.65770 -12.56033 -12.34178 -12.18448 -12.01569 -11.78671 -11.72138 -11.26389 -11.10283 -10.95185 -10.76893 -10.61894 -10.52771 -10.41673 -10.00666 -9.94824 -9.49239 -9.26318 -8.90246 -8.75602 -7.62334 -7.12414 -6.83562 -4.79541 0.90266 1.63297 2.54978 2.77903 2.92327 2.95217 3.03974 3.05181 3.20826 3.72235 3.79052 4.10081 4.27915 4.60264 4.65150 4.82326 4.84462 5.18711 5.20759 5.31403 5.49079 5.65570 5.73673 5.78152 5.88046 5.97788 6.06605 6.11276 6.23152 6.30774 6.33651 6.34528 6.47824 6.69050 6.79937 6.84383 6.91284 7.13075 7.31982 7.41245 7.48903 7.69646 7.73673 7.77056 8.02001 8.12620 8.55008 8.77287 9.00540 9.99642 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.012202 B = 0.004258 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.218818 B = 6574.315655 C = 8008.738438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.162 3.838 3 H 0.096 0.904 4 C -0.050 4.050 5 C -0.183 4.183 6 C 0.515 3.485 7 O -0.518 6.518 8 O -0.514 6.514 9 N -0.723 5.723 10 C 0.600 3.400 11 O -0.554 6.554 12 C -0.023 4.023 13 C -0.163 4.163 14 C -0.129 4.129 15 C -0.081 4.081 16 C -0.159 4.159 17 C -0.134 4.134 18 C -0.081 4.081 19 C 0.070 3.930 20 N -0.265 5.265 21 C -0.451 4.451 22 H 0.103 0.897 23 C 0.030 3.970 24 N -0.818 5.818 25 Si 1.076 2.924 26 H -0.273 1.273 27 H -0.275 1.275 28 H -0.273 1.273 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.136 0.864 33 H 0.142 0.858 34 H 0.411 0.589 35 H 0.419 0.581 36 H 0.135 0.865 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.119 0.881 41 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.072 2.684 -6.332 7.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.057 3.943 3 H 0.114 0.886 4 C -0.069 4.069 5 C -0.203 4.203 6 C 0.360 3.640 7 O -0.408 6.408 8 O -0.325 6.325 9 N -0.384 5.384 10 C 0.390 3.610 11 O -0.433 6.433 12 C -0.137 4.137 13 C -0.191 4.191 14 C -0.134 4.134 15 C -0.100 4.100 16 C -0.178 4.178 17 C -0.155 4.155 18 C -0.101 4.101 19 C -0.044 4.044 20 N 0.071 4.929 21 C -0.578 4.578 22 H 0.121 0.879 23 C -0.187 4.187 24 N -0.443 5.443 25 Si 0.898 3.102 26 H -0.199 1.199 27 H -0.200 1.200 28 H -0.198 1.198 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.154 0.846 33 H 0.160 0.840 34 H 0.269 0.731 35 H 0.265 0.735 36 H 0.152 0.848 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.137 0.863 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.917 1.772 -6.892 7.691 hybrid contribution -0.206 0.643 -0.040 0.676 sum -3.123 2.415 -6.931 7.977 Atomic orbital electron populations 1.22161 0.94014 1.02776 1.02920 1.19999 0.94852 0.97034 0.82393 0.88639 1.24073 0.90607 0.99767 0.92430 1.21889 1.01903 1.02396 0.94149 1.21246 0.75554 0.84064 0.83106 1.90923 1.56568 1.19198 1.74125 1.84620 1.59613 1.50294 1.37975 1.46803 1.67267 1.16275 1.08055 1.17217 0.76778 0.85221 0.81777 1.90722 1.50938 1.17223 1.84432 1.20137 1.12360 0.84665 0.96553 1.20414 1.07683 0.98437 0.92541 1.18009 1.06806 0.93579 0.94979 1.20127 0.99164 0.97519 0.93157 1.20342 1.04860 0.93215 0.99420 1.20619 1.02991 0.97448 0.94408 1.20205 0.99043 0.96521 0.94290 1.18429 1.05130 0.95380 0.85483 1.40141 1.40270 1.04496 1.08025 1.20492 1.06669 1.15015 1.15632 0.87944 1.26831 0.91519 1.02755 0.97580 1.70573 1.18259 1.27013 1.28504 0.83387 0.76765 0.73802 0.76220 1.19864 1.19995 1.19829 0.90952 0.91610 0.91970 0.84645 0.83995 0.73057 0.73468 0.84758 0.87414 0.87519 0.87199 0.86341 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.47 37.16 0.35 -1.68 16 2 C 0.16 2.34 2.90 -69.08 -0.20 2.14 16 3 H 0.10 1.39 7.33 -51.93 -0.38 1.01 16 4 C -0.05 -0.65 8.54 -36.10 -0.31 -0.96 16 5 C -0.18 -2.26 9.76 -37.85 -0.37 -2.63 16 6 C 0.51 6.65 8.28 34.26 0.28 6.93 16 7 O -0.52 -8.18 17.01 -19.29 -0.33 -8.50 16 8 O -0.51 -5.14 13.44 -40.75 -0.55 -5.69 16 9 N -0.72 -13.25 5.00 -56.18 -0.28 -13.53 16 10 C 0.60 12.83 7.72 -12.76 -0.10 12.73 16 11 O -0.55 -12.39 16.53 5.22 0.09 -12.30 16 12 C -0.02 -0.52 6.77 -82.25 -0.56 -1.08 16 13 C -0.16 -3.67 10.55 -39.02 -0.41 -4.08 16 14 C -0.13 -2.90 6.16 -106.89 -0.66 -3.56 16 15 C -0.08 -1.58 10.06 -39.51 -0.40 -1.97 16 16 C -0.16 -2.91 9.97 -39.95 -0.40 -3.31 16 17 C -0.13 -2.61 10.02 -39.50 -0.40 -3.01 16 18 C -0.08 -1.82 8.57 -39.41 -0.34 -2.15 16 19 C 0.07 1.67 5.42 -83.84 -0.45 1.22 16 20 N -0.26 -6.37 2.57 -56.08 -0.14 -6.51 16 21 C -0.45 -10.48 7.78 -15.00 -0.12 -10.60 16 22 H 0.10 2.24 6.29 -52.49 -0.33 1.91 16 23 C 0.03 0.70 4.40 -17.47 -0.08 0.63 16 24 N -0.82 -20.59 12.02 55.50 0.67 -19.92 16 25 Si 1.08 20.43 29.96 -169.99 -5.09 15.34 16 26 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 27 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 28 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 29 H 0.07 1.03 8.11 -51.93 -0.42 0.61 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.14 1.80 7.49 -52.48 -0.39 1.40 16 33 H 0.14 1.51 7.87 -52.49 -0.41 1.10 16 34 H 0.41 2.25 9.11 45.56 0.42 2.66 16 35 H 0.42 8.00 4.38 -40.82 -0.18 7.82 16 36 H 0.13 2.77 8.06 -52.49 -0.42 2.35 16 37 H 0.11 1.80 8.06 -52.49 -0.42 1.37 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 40 H 0.12 2.76 6.78 -52.48 -0.36 2.40 16 41 H 0.29 7.80 6.91 -40.82 -0.28 7.52 16 LS Contribution 357.01 15.07 5.38 5.38 Total: -1.00 -29.71 357.01 -8.08 -37.79 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: -3.67 Total: 19.32 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -4.15 Total: -11.37 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.24 Total: -39.96 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.79 Total: -26.49 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.09 Total: 15.34 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.71 -8.08 -37.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061000.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.930 kcal (2) G-P(sol) polarization free energy of solvation -29.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds