Wall clock time and date at job start Tue Mar 31 2020 16:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47016 * 2 1 4 4 C 1.50705 * 109.47116 * 240.00809 * 2 1 3 5 5 C 1.33079 * 120.00187 * 124.99732 * 4 2 1 6 6 C 1.46956 * 119.99933 * 179.97438 * 5 4 2 7 7 O 1.21536 * 119.99926 * 0.02562 * 6 5 4 8 8 O 1.34796 * 120.00175 * 180.02562 * 6 5 4 9 9 N 1.46497 * 109.47199 * 120.00494 * 2 1 3 10 10 C 1.34775 * 119.99972 * 274.99559 * 9 2 1 11 11 O 1.21664 * 119.99854 * 4.69909 * 10 9 2 12 12 C 1.46889 * 120.00035 * 184.69202 * 10 9 2 13 13 C 1.36126 * 125.43867 * 173.54627 * 12 10 9 14 14 C 1.41701 * 107.74870 * 180.28250 * 13 12 10 15 15 C 1.40020 * 133.34786 * 179.78070 * 14 13 12 16 16 C 1.36577 * 119.82764 * 179.97438 * 15 14 13 17 17 C 1.38855 * 120.59915 * 359.95613 * 16 15 14 18 18 C 1.37841 * 120.63530 * 0.02696 * 17 16 15 19 19 C 1.39080 * 119.81489 * 359.97438 * 18 17 16 20 20 N 1.37841 * 133.16427 * 180.02562 * 19 18 17 21 21 C 1.36893 * 125.62090 * 359.97438 * 20 19 18 22 22 H 1.07988 * 120.00010 * 137.85406 * 21 20 19 23 23 C 1.39014 * 119.99520 * 317.85543 * 21 20 19 24 24 N 1.31345 * 120.00512 * 341.72056 * 23 21 20 25 25 Si 1.86798 * 119.99518 * 161.72704 * 23 21 20 26 26 H 1.48500 * 109.47271 * 269.99691 * 25 23 21 27 27 H 1.48502 * 109.47501 * 29.99518 * 25 23 21 28 28 H 1.48500 * 109.47161 * 149.99987 * 25 23 21 29 29 H 1.09001 * 109.47302 * 299.99621 * 1 2 3 30 30 H 1.09006 * 109.47288 * 59.99473 * 1 2 3 31 31 H 1.08999 * 109.47077 * 179.97438 * 1 2 3 32 32 H 1.08007 * 119.99449 * 304.99488 * 4 2 1 33 33 H 1.07999 * 120.00337 * 0.02562 * 5 4 2 34 34 H 0.96695 * 117.00416 * 180.02562 * 8 6 5 35 35 H 0.97000 * 120.00043 * 95.00395 * 9 2 1 36 36 H 1.08001 * 126.12303 * 0.02562 * 13 12 10 37 37 H 1.07993 * 120.08508 * 359.97438 * 15 14 13 38 38 H 1.07999 * 119.69893 * 179.97438 * 16 15 14 39 39 H 1.08001 * 119.68145 * 180.02562 * 17 16 15 40 40 H 1.08003 * 120.08974 * 179.97438 * 18 17 16 41 41 H 0.97001 * 119.99996 * 353.99751 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 6 2.8773 -0.0961 -2.0551 6 6 3.3676 -0.7889 -3.2547 7 8 3.0010 -1.9226 -3.4942 8 8 4.2239 -0.1670 -4.0896 9 7 2.0183 -0.6907 1.1961 10 6 2.1471 -0.0184 2.3571 11 8 1.7779 1.1383 2.4344 12 6 2.7331 -0.6823 3.5291 13 6 3.0291 -0.0782 4.7125 14 6 3.5811 -1.0599 5.5724 15 6 4.0645 -1.0247 6.8860 16 6 4.5471 -2.1647 7.4631 17 6 4.5624 -3.3614 6.7590 18 6 4.0916 -3.4211 5.4649 19 6 3.5953 -2.2733 4.8560 20 7 3.0681 -2.0209 3.6077 21 6 2.9090 -2.9426 2.6081 22 1 2.0038 -2.9497 2.0193 23 6 3.9127 -3.8694 2.3512 24 7 5.1313 -3.6574 2.7929 25 14 3.5282 -5.4165 1.3775 26 1 3.1121 -6.4964 2.3079 27 1 2.4286 -5.1379 0.4192 28 1 4.7384 -5.8453 0.6312 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7065 -1.7178 -1.4433 33 1 3.2034 0.9112 -1.8421 34 1 4.5184 -0.6628 -4.8658 35 1 2.2491 -1.6318 1.1524 36 1 2.8750 0.9637 4.9516 37 1 4.0559 -0.0986 7.4415 38 1 4.9199 -2.1351 8.4763 39 1 4.9470 -4.2540 7.2299 40 1 4.1080 -4.3565 4.9253 41 1 5.3521 -2.8159 3.2220 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604061000.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:14 Heat of formation + Delta-G solvation = -74.054398 kcal Electronic energy + Delta-G solvation = -27506.191944 eV Core-core repulsion = 23543.887317 eV Total energy + Delta-G solvation = -3962.304627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = -0.58 seconds Orbital eigenvalues (eV) -42.44929 -41.21257 -40.48400 -37.80540 -37.61906 -37.01051 -35.62086 -34.00986 -32.38125 -31.50538 -30.56895 -29.58283 -26.65025 -26.39746 -25.01733 -22.96371 -22.70455 -21.75071 -21.46813 -20.74892 -20.04531 -19.24399 -18.31055 -18.00704 -17.48781 -16.95580 -16.75221 -16.62923 -16.27743 -15.86841 -15.68177 -15.51146 -15.01045 -14.85479 -14.78337 -14.54838 -14.24013 -13.95808 -13.71822 -13.50217 -13.34204 -13.04425 -12.80330 -12.66521 -12.47220 -12.26051 -12.17848 -12.11519 -11.98779 -11.84060 -11.57147 -11.32486 -10.98968 -10.84791 -10.58867 -10.23293 -9.39565 -8.83969 -8.53070 -6.60997 -0.14321 -0.01577 0.94811 1.25584 1.48264 1.52999 1.71339 1.74161 2.03251 2.16408 2.35535 2.41186 2.61522 2.89420 3.18576 3.57090 3.80111 3.92225 4.09067 4.12537 4.23629 4.29268 4.32177 4.42492 4.61731 4.66520 4.69640 4.81000 4.86147 5.01343 5.08183 5.09582 5.15634 5.24231 5.26563 5.39892 5.43173 5.51361 5.66696 5.74037 5.82690 6.02925 6.05734 6.41186 6.46564 6.82596 6.91271 7.14364 7.26581 8.13999 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.012202 B = 0.004258 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.218818 B = 6574.315655 C = 8008.738438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.160 3.840 3 H 0.096 0.904 4 C -0.056 4.056 5 C -0.175 4.175 6 C 0.519 3.481 7 O -0.551 6.551 8 O -0.505 6.505 9 N -0.717 5.717 10 C 0.597 3.403 11 O -0.571 6.571 12 C -0.047 4.047 13 C -0.172 4.172 14 C -0.149 4.149 15 C -0.083 4.083 16 C -0.152 4.152 17 C -0.122 4.122 18 C -0.113 4.113 19 C 0.046 3.954 20 N -0.282 5.282 21 C -0.459 4.459 22 H 0.110 0.890 23 C 0.001 3.999 24 N -0.843 5.843 25 Si 1.115 2.885 26 H -0.265 1.265 27 H -0.252 1.252 28 H -0.280 1.280 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.134 0.866 33 H 0.160 0.840 34 H 0.432 0.568 35 H 0.415 0.585 36 H 0.147 0.853 37 H 0.139 0.861 38 H 0.151 0.849 39 H 0.140 0.860 40 H 0.100 0.900 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.081 2.765 -6.181 7.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.057 3.943 3 H 0.114 0.886 4 C -0.075 4.075 5 C -0.194 4.194 6 C 0.365 3.635 7 O -0.443 6.443 8 O -0.319 6.319 9 N -0.375 5.375 10 C 0.386 3.614 11 O -0.452 6.452 12 C -0.161 4.161 13 C -0.200 4.200 14 C -0.154 4.154 15 C -0.102 4.102 16 C -0.171 4.171 17 C -0.142 4.142 18 C -0.133 4.133 19 C -0.068 4.068 20 N 0.053 4.947 21 C -0.585 4.585 22 H 0.127 0.873 23 C -0.210 4.210 24 N -0.469 5.469 25 Si 0.933 3.067 26 H -0.190 1.190 27 H -0.176 1.176 28 H -0.205 1.205 29 H 0.072 0.928 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.152 0.848 33 H 0.178 0.822 34 H 0.294 0.706 35 H 0.261 0.739 36 H 0.164 0.836 37 H 0.157 0.843 38 H 0.169 0.831 39 H 0.158 0.842 40 H 0.118 0.882 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.934 1.870 -6.777 7.618 hybrid contribution -0.145 0.697 -0.028 0.712 sum -3.079 2.566 -6.804 7.897 Atomic orbital electron populations 1.22116 0.92471 1.03252 1.03426 1.20202 0.96090 0.96702 0.81325 0.88647 1.23884 0.91624 0.99785 0.92205 1.22083 1.00730 1.02989 0.93623 1.21279 0.75393 0.83497 0.83291 1.90916 1.57869 1.20600 1.74961 1.84576 1.58525 1.50198 1.38556 1.46782 1.66292 1.15998 1.08478 1.17124 0.76905 0.85065 0.82288 1.90692 1.51989 1.17689 1.84822 1.20582 1.12900 0.84941 0.97699 1.20681 1.07595 0.99076 0.92609 1.18401 1.07540 0.93007 0.96425 1.20561 0.98090 0.99487 0.92060 1.20818 1.03255 0.91952 1.01052 1.21075 1.00660 0.99322 0.93113 1.20257 1.01576 0.95633 0.95816 1.18867 1.05521 0.96500 0.85906 1.40292 1.41209 1.04796 1.08450 1.20736 1.06871 1.15056 1.15858 0.87295 1.28037 0.90864 1.04754 0.97348 1.70686 1.19459 1.26160 1.30612 0.82932 0.76992 0.71158 0.75650 1.19004 1.17598 1.20511 0.92801 0.88640 0.91541 0.84811 0.82237 0.70647 0.73948 0.83563 0.84310 0.83125 0.84173 0.88169 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.47 71.98 0.68 -3.10 16 2 C 0.16 4.56 2.90 44.25 0.13 4.69 16 3 H 0.10 2.73 7.33 -2.39 -0.02 2.71 16 4 C -0.06 -1.41 8.54 24.53 0.21 -1.20 16 5 C -0.17 -4.04 9.76 23.40 0.23 -3.81 16 6 C 0.52 12.62 8.28 70.11 0.58 13.20 16 7 O -0.55 -16.85 17.01 19.72 0.34 -16.52 16 8 O -0.51 -9.02 13.44 -57.08 -0.77 -9.79 16 9 N -0.72 -26.63 5.00 -449.89 -2.25 -28.88 16 10 C 0.60 26.13 7.72 86.51 0.67 26.80 16 11 O -0.57 -25.93 16.53 -4.23 -0.07 -26.00 16 12 C -0.05 -2.25 6.77 39.91 0.27 -1.98 16 13 C -0.17 -7.86 10.55 22.63 0.24 -7.62 16 14 C -0.15 -6.73 6.16 -21.33 -0.13 -6.86 16 15 C -0.08 -3.08 10.06 22.31 0.22 -2.85 16 16 C -0.15 -5.08 9.97 22.03 0.22 -4.86 16 17 C -0.12 -4.52 10.02 22.32 0.22 -4.29 16 18 C -0.11 -5.13 8.57 22.38 0.19 -4.94 16 19 C 0.05 2.24 5.42 39.06 0.21 2.46 16 20 N -0.28 -14.00 2.57 -331.34 -0.85 -14.86 16 21 C -0.46 -21.90 7.78 84.09 0.65 -21.25 16 22 H 0.11 4.88 6.29 -2.92 -0.02 4.86 16 23 C 0.00 0.05 4.40 84.95 0.37 0.43 16 24 N -0.84 -43.85 12.02 21.67 0.26 -43.59 16 25 Si 1.12 41.30 29.96 68.60 2.06 43.36 16 26 H -0.27 -9.41 7.11 99.48 0.71 -8.70 16 27 H -0.25 -8.34 7.11 99.48 0.71 -7.64 16 28 H -0.28 -10.60 7.11 99.48 0.71 -9.89 16 29 H 0.05 1.52 8.11 -2.39 -0.02 1.50 16 30 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.13 3.47 7.49 -2.91 -0.02 3.44 16 33 H 0.16 3.09 7.87 -2.91 -0.02 3.07 16 34 H 0.43 3.75 9.11 -74.06 -0.67 3.07 16 35 H 0.42 16.17 4.38 -92.71 -0.41 15.76 16 36 H 0.15 6.10 8.06 -2.91 -0.02 6.08 16 37 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 38 H 0.15 3.74 8.06 -2.91 -0.02 3.71 16 39 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 40 H 0.10 4.83 6.78 -2.91 -0.02 4.81 16 41 H 0.27 15.17 6.91 -92.71 -0.64 14.53 16 Total: -1.00 -66.31 357.01 3.83 -62.48 By element: Atomic # 1 Polarization: 48.84 SS G_CDS: 0.15 Total: 48.99 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 4.97 Total: -15.19 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: -2.84 Total: -87.33 kcal Atomic # 8 Polarization: -51.81 SS G_CDS: -0.50 Total: -52.31 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.06 Total: 43.36 kcal Total: -66.31 3.83 -62.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061000.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.571 kcal (2) G-P(sol) polarization free energy of solvation -66.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.58 seconds