Wall clock time and date at job start Tue Mar 31 2020 16:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47663 * 2 1 4 4 C 1.50702 * 109.47033 * 120.00982 * 2 1 3 5 5 C 1.33082 * 119.99880 * 255.77481 * 4 2 1 6 6 C 1.46957 * 119.99672 * 10.12394 * 5 4 2 7 7 O 1.21529 * 120.00029 * 10.82193 * 6 5 4 8 8 O 1.34801 * 119.99561 * 190.82871 * 6 5 4 9 9 N 1.46509 * 109.46723 * 240.00457 * 2 1 3 10 10 C 1.34770 * 119.99586 * 83.11564 * 9 2 1 11 11 O 1.21664 * 120.00763 * 4.28995 * 10 9 2 12 12 C 1.46896 * 119.99763 * 184.29136 * 10 9 2 13 13 C 1.36115 * 125.43802 * 180.74349 * 12 10 9 14 14 C 1.41702 * 107.75154 * 179.90311 * 13 12 10 15 15 C 1.40021 * 133.35382 * 180.11958 * 14 13 12 16 16 C 1.36580 * 119.82699 * 180.29996 * 15 14 13 17 17 C 1.38858 * 120.60483 * 359.95736 * 16 15 14 18 18 C 1.37845 * 120.62819 * 0.02562 * 17 16 15 19 19 C 1.39085 * 119.81859 * 0.02562 * 18 17 16 20 20 N 1.37831 * 133.16120 * 179.97438 * 19 18 17 21 21 C 1.36884 * 125.62659 * 359.97438 * 20 19 18 22 22 H 1.07997 * 120.00802 * 133.14932 * 21 20 19 23 23 C 1.39020 * 119.99718 * 313.15562 * 21 20 19 24 24 N 1.31346 * 119.99877 * 1.04845 * 23 21 20 25 25 Si 1.86799 * 120.00102 * 181.04956 * 23 21 20 26 26 H 1.48502 * 109.47083 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47221 * 119.99656 * 25 23 21 28 28 H 1.48501 * 109.47206 * 240.00250 * 25 23 21 29 29 H 1.09002 * 109.46620 * 299.99632 * 1 2 3 30 30 H 1.08998 * 109.47550 * 59.99069 * 1 2 3 31 31 H 1.08998 * 109.47663 * 179.97438 * 1 2 3 32 32 H 1.08000 * 120.00450 * 75.77778 * 4 2 1 33 33 H 1.07994 * 120.00493 * 190.39130 * 5 4 2 34 34 H 0.96705 * 116.99167 * 180.02562 * 8 6 5 35 35 H 0.96995 * 119.99783 * 263.11525 * 9 2 1 36 36 H 1.08005 * 126.12499 * 0.03496 * 13 12 10 37 37 H 1.07997 * 120.08553 * 0.30137 * 15 14 13 38 38 H 1.08003 * 119.69583 * 179.97438 * 16 15 14 39 39 H 1.07994 * 119.68455 * 180.02562 * 17 16 15 40 40 H 1.08002 * 120.08809 * 179.97438 * 18 17 16 41 41 H 0.97001 * 120.00080 * 185.01306 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 6 2.5211 -0.0097 2.2506 6 6 2.3700 1.4518 2.2774 7 8 1.6359 2.0015 1.4799 8 8 3.0457 2.1827 3.1864 9 7 2.0182 -0.6906 -1.1963 10 6 2.1109 -0.0279 -2.3662 11 8 1.8639 1.1625 -2.4124 12 6 2.5101 -0.7429 -3.5857 13 6 2.6524 -0.1829 -4.8181 14 6 3.0495 -1.2061 -5.7144 15 6 3.3414 -1.2246 -7.0837 16 6 3.7005 -2.3967 -7.6860 17 6 3.7802 -3.5730 -6.9524 18 6 3.4980 -3.5797 -5.6032 19 6 3.1291 -2.3988 -4.9679 20 7 2.7941 -2.0932 -3.6663 21 6 2.7509 -2.9804 -2.6248 22 1 3.2125 -2.7288 -1.6814 23 6 2.1129 -4.2056 -2.7814 24 7 1.5696 -4.5203 -3.9351 25 14 2.0285 -5.4043 -1.3513 26 1 2.7120 -4.8161 -0.1714 27 1 0.6074 -5.6759 -1.0163 28 1 2.6994 -6.6740 -1.7293 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.9957 -1.7887 1.2842 33 1 3.0326 -0.5145 3.0567 34 1 2.9137 3.1404 3.1653 35 1 2.2748 -1.6246 -1.1463 36 1 2.4934 0.8558 -5.0677 37 1 3.2827 -0.3145 -7.6621 38 1 3.9248 -2.4086 -8.7424 39 1 4.0661 -4.4913 -7.4436 40 1 3.5624 -4.4997 -5.0411 41 1 1.0620 -5.3422 -4.0240 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604061001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:21 Heat of formation + Delta-G solvation = -38.046858 kcal Electronic energy + Delta-G solvation = -27757.489625 eV Core-core repulsion = 23796.746401 eV Total energy + Delta-G solvation = -3960.743223 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.58091 -40.31115 -38.65931 -36.64900 -35.91169 -35.41372 -33.69617 -32.65382 -30.73649 -29.93440 -28.83234 -27.81559 -25.13943 -25.08413 -23.50430 -21.71434 -20.98362 -20.14893 -19.91364 -19.06382 -18.38548 -18.10095 -16.68363 -16.51044 -15.73395 -15.63692 -15.04242 -14.90745 -14.66479 -14.40228 -13.97611 -13.90428 -13.37230 -13.31358 -13.06109 -12.94558 -12.86424 -12.57585 -12.24563 -12.01172 -11.91521 -11.72408 -11.61243 -11.52145 -11.27707 -11.13937 -10.77577 -10.66363 -10.26088 -9.97360 -9.81012 -9.74704 -9.36372 -9.29423 -8.62622 -8.49600 -7.20496 -6.86499 -6.59560 -4.76834 0.94723 1.85687 2.73571 2.77082 2.84670 2.89386 2.91722 3.02347 3.16708 3.61508 3.85235 4.25858 4.53631 4.57217 4.67482 5.00370 5.08361 5.21104 5.50380 5.57792 5.71474 5.86460 5.90548 5.94906 5.98168 6.06751 6.16420 6.27747 6.44017 6.44490 6.60119 6.63554 6.70664 6.78181 6.91880 7.05326 7.11622 7.14664 7.46097 7.58646 7.66178 7.81567 7.90585 7.94600 8.21541 8.29429 8.64287 8.98029 9.24358 10.08584 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013442 B = 0.004198 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.526838 B = 6668.460710 C = 8197.012313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.134 3.866 3 H 0.129 0.871 4 C -0.045 4.045 5 C -0.196 4.196 6 C 0.503 3.497 7 O -0.498 6.498 8 O -0.518 6.518 9 N -0.728 5.728 10 C 0.599 3.401 11 O -0.553 6.553 12 C -0.017 4.017 13 C -0.163 4.163 14 C -0.135 4.135 15 C -0.088 4.088 16 C -0.160 4.160 17 C -0.150 4.150 18 C -0.049 4.049 19 C 0.110 3.890 20 N -0.265 5.265 21 C -0.373 4.373 22 H 0.105 0.895 23 C 0.059 3.941 24 N -0.818 5.818 25 Si 0.925 3.075 26 H -0.261 1.261 27 H -0.271 1.271 28 H -0.270 1.270 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.411 0.589 35 H 0.411 0.589 36 H 0.132 0.868 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.118 0.882 41 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.677 1.858 9.475 9.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.030 3.970 3 H 0.146 0.854 4 C -0.064 4.064 5 C -0.215 4.215 6 C 0.349 3.651 7 O -0.388 6.388 8 O -0.329 6.329 9 N -0.388 5.388 10 C 0.388 3.612 11 O -0.431 6.431 12 C -0.132 4.132 13 C -0.191 4.191 14 C -0.140 4.140 15 C -0.107 4.107 16 C -0.179 4.179 17 C -0.170 4.170 18 C -0.068 4.068 19 C -0.005 4.005 20 N 0.070 4.930 21 C -0.500 4.500 22 H 0.122 0.878 23 C -0.155 4.155 24 N -0.446 5.446 25 Si 0.749 3.251 26 H -0.185 1.185 27 H -0.196 1.196 28 H -0.195 1.195 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.160 0.840 33 H 0.164 0.836 34 H 0.269 0.731 35 H 0.257 0.743 36 H 0.150 0.850 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.136 0.864 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.241 1.979 9.481 9.765 hybrid contribution -0.252 -0.697 0.640 0.979 sum 0.988 1.282 10.121 10.250 Atomic orbital electron populations 1.21959 0.93978 1.01716 1.02810 1.20748 0.95399 0.98866 0.81956 0.85365 1.24176 0.88346 1.00946 0.92887 1.21848 1.06890 0.89420 1.03347 1.21423 0.77035 0.89329 0.77360 1.90899 1.36940 1.73614 1.37317 1.84615 1.66644 1.25771 1.55905 1.46836 1.67330 1.16583 1.08080 1.17225 0.76114 0.85767 0.82071 1.90734 1.51893 1.14570 1.85936 1.20124 1.12604 0.85797 0.94668 1.20410 1.09818 0.98264 0.90579 1.18052 1.08699 0.93444 0.93808 1.20049 1.00853 0.97160 0.92630 1.20274 1.05932 0.93221 0.98476 1.20586 1.05496 0.97209 0.93732 1.20130 0.97459 0.95862 0.93388 1.18283 1.02533 0.94388 0.85256 1.39906 1.42711 1.04275 1.06105 1.19462 1.40007 0.97396 0.93117 0.87792 1.25721 0.93975 0.97964 0.97811 1.69939 1.27259 1.24532 1.22883 0.85892 0.78984 0.80072 0.80166 1.18523 1.19603 1.19527 0.91817 0.91456 0.92665 0.84028 0.83649 0.73127 0.74315 0.84993 0.87804 0.87981 0.87748 0.86372 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.20 37.16 0.34 -1.98 16 2 C 0.13 2.23 2.12 -69.08 -0.15 2.08 16 3 H 0.13 2.43 4.51 -52.03 -0.23 2.19 16 4 C -0.04 -0.55 9.02 -36.10 -0.33 -0.88 16 5 C -0.20 -2.14 10.14 -37.84 -0.38 -2.53 16 6 C 0.50 6.22 8.04 34.26 0.28 6.50 16 7 O -0.50 -7.75 13.45 -19.29 -0.26 -8.01 16 8 O -0.52 -4.91 13.44 -40.77 -0.55 -5.46 16 9 N -0.73 -14.09 5.01 -56.17 -0.28 -14.38 16 10 C 0.60 13.69 7.72 -12.76 -0.10 13.59 16 11 O -0.55 -13.59 16.51 5.22 0.09 -13.51 16 12 C -0.02 -0.42 6.77 -82.24 -0.56 -0.98 16 13 C -0.16 -3.86 10.54 -39.02 -0.41 -4.27 16 14 C -0.14 -3.20 6.16 -106.89 -0.66 -3.86 16 15 C -0.09 -1.82 10.06 -39.51 -0.40 -2.22 16 16 C -0.16 -3.09 9.97 -39.95 -0.40 -3.49 16 17 C -0.15 -3.04 10.02 -39.50 -0.40 -3.43 16 18 C -0.05 -1.13 8.50 -39.41 -0.33 -1.46 16 19 C 0.11 2.73 6.03 -83.84 -0.51 2.22 16 20 N -0.27 -6.54 2.82 -56.08 -0.16 -6.70 16 21 C -0.37 -8.58 7.93 -15.01 -0.12 -8.70 16 22 H 0.11 2.19 6.03 -52.49 -0.32 1.88 16 23 C 0.06 1.32 5.06 -17.47 -0.09 1.24 16 24 N -0.82 -19.70 10.31 55.50 0.57 -19.12 16 25 Si 0.93 16.62 29.56 -169.99 -5.02 11.59 16 26 H -0.26 -4.33 7.11 56.52 0.40 -3.93 16 27 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 28 H -0.27 -4.92 7.11 56.52 0.40 -4.51 16 29 H 0.06 0.91 7.70 -51.93 -0.40 0.51 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.15 1.17 8.06 -52.49 -0.42 0.74 16 34 H 0.41 2.19 9.11 45.56 0.42 2.61 16 35 H 0.41 7.78 4.26 -40.82 -0.17 7.61 16 36 H 0.13 2.90 8.06 -52.48 -0.42 2.48 16 37 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 38 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 39 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 40 H 0.12 2.78 6.64 -52.49 -0.35 2.43 16 41 H 0.28 6.35 8.31 -40.82 -0.34 6.01 16 LS Contribution 350.90 15.07 5.29 5.29 Total: -1.00 -30.58 350.90 -8.10 -38.69 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: -3.58 Total: 19.76 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -4.20 Total: -8.16 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.13 Total: -40.20 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.72 Total: -26.97 kcal Atomic # 14 Polarization: 16.62 SS G_CDS: -5.02 Total: 11.59 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.58 -8.10 -38.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.641 kcal (2) G-P(sol) polarization free energy of solvation -30.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds