Wall clock time and date at job start Tue Mar 31 2020 16:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47663 * 2 1 4 4 C 1.50702 * 109.47033 * 120.00982 * 2 1 3 5 5 C 1.33082 * 119.99880 * 255.77481 * 4 2 1 6 6 C 1.46957 * 119.99672 * 10.12394 * 5 4 2 7 7 O 1.21529 * 120.00029 * 10.82193 * 6 5 4 8 8 O 1.34801 * 119.99561 * 190.82871 * 6 5 4 9 9 N 1.46509 * 109.46723 * 240.00457 * 2 1 3 10 10 C 1.34770 * 119.99586 * 83.11564 * 9 2 1 11 11 O 1.21664 * 120.00763 * 4.28995 * 10 9 2 12 12 C 1.46896 * 119.99763 * 184.29136 * 10 9 2 13 13 C 1.36115 * 125.43802 * 180.74349 * 12 10 9 14 14 C 1.41702 * 107.75154 * 179.90311 * 13 12 10 15 15 C 1.40021 * 133.35382 * 180.11958 * 14 13 12 16 16 C 1.36580 * 119.82699 * 180.29996 * 15 14 13 17 17 C 1.38858 * 120.60483 * 359.95736 * 16 15 14 18 18 C 1.37845 * 120.62819 * 0.02562 * 17 16 15 19 19 C 1.39085 * 119.81859 * 0.02562 * 18 17 16 20 20 N 1.37831 * 133.16120 * 179.97438 * 19 18 17 21 21 C 1.36884 * 125.62659 * 359.97438 * 20 19 18 22 22 H 1.07997 * 120.00802 * 133.14932 * 21 20 19 23 23 C 1.39020 * 119.99718 * 313.15562 * 21 20 19 24 24 N 1.31346 * 119.99877 * 1.04845 * 23 21 20 25 25 Si 1.86799 * 120.00102 * 181.04956 * 23 21 20 26 26 H 1.48502 * 109.47083 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47221 * 119.99656 * 25 23 21 28 28 H 1.48501 * 109.47206 * 240.00250 * 25 23 21 29 29 H 1.09002 * 109.46620 * 299.99632 * 1 2 3 30 30 H 1.08998 * 109.47550 * 59.99069 * 1 2 3 31 31 H 1.08998 * 109.47663 * 179.97438 * 1 2 3 32 32 H 1.08000 * 120.00450 * 75.77778 * 4 2 1 33 33 H 1.07994 * 120.00493 * 190.39130 * 5 4 2 34 34 H 0.96705 * 116.99167 * 180.02562 * 8 6 5 35 35 H 0.96995 * 119.99783 * 263.11525 * 9 2 1 36 36 H 1.08005 * 126.12499 * 0.03496 * 13 12 10 37 37 H 1.07997 * 120.08553 * 0.30137 * 15 14 13 38 38 H 1.08003 * 119.69583 * 179.97438 * 16 15 14 39 39 H 1.07994 * 119.68455 * 180.02562 * 17 16 15 40 40 H 1.08002 * 120.08809 * 179.97438 * 18 17 16 41 41 H 0.97001 * 120.00080 * 185.01306 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 6 2.5211 -0.0097 2.2506 6 6 2.3700 1.4518 2.2774 7 8 1.6359 2.0015 1.4799 8 8 3.0457 2.1827 3.1864 9 7 2.0182 -0.6906 -1.1963 10 6 2.1109 -0.0279 -2.3662 11 8 1.8639 1.1625 -2.4124 12 6 2.5101 -0.7429 -3.5857 13 6 2.6524 -0.1829 -4.8181 14 6 3.0495 -1.2061 -5.7144 15 6 3.3414 -1.2246 -7.0837 16 6 3.7005 -2.3967 -7.6860 17 6 3.7802 -3.5730 -6.9524 18 6 3.4980 -3.5797 -5.6032 19 6 3.1291 -2.3988 -4.9679 20 7 2.7941 -2.0932 -3.6663 21 6 2.7509 -2.9804 -2.6248 22 1 3.2125 -2.7288 -1.6814 23 6 2.1129 -4.2056 -2.7814 24 7 1.5696 -4.5203 -3.9351 25 14 2.0285 -5.4043 -1.3513 26 1 2.7120 -4.8161 -0.1714 27 1 0.6074 -5.6759 -1.0163 28 1 2.6994 -6.6740 -1.7293 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.9957 -1.7887 1.2842 33 1 3.0326 -0.5145 3.0567 34 1 2.9137 3.1404 3.1653 35 1 2.2748 -1.6246 -1.1463 36 1 2.4934 0.8558 -5.0677 37 1 3.2827 -0.3145 -7.6621 38 1 3.9248 -2.4086 -8.7424 39 1 4.0661 -4.4913 -7.4436 40 1 3.5624 -4.4997 -5.0411 41 1 1.0620 -5.3422 -4.0240 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604061001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:18 Heat of formation + Delta-G solvation = -56.914643 kcal Electronic energy + Delta-G solvation = -27758.307793 eV Core-core repulsion = 23796.746401 eV Total energy + Delta-G solvation = -3961.561392 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -42.24344 -41.38786 -40.25840 -37.75503 -37.56954 -36.63931 -35.38347 -33.95260 -32.45720 -31.32377 -30.47580 -29.47648 -26.83347 -26.25476 -24.96089 -23.08749 -22.67406 -21.64972 -21.39783 -20.50193 -19.85996 -19.17454 -18.14361 -17.91774 -17.35014 -16.77293 -16.48773 -16.28469 -16.21256 -16.10184 -15.42149 -15.10695 -14.90511 -14.72610 -14.56527 -14.47405 -14.26597 -14.04122 -13.58847 -13.54098 -13.39810 -13.22127 -13.03573 -12.74784 -12.72729 -12.31527 -12.29670 -12.07242 -11.87756 -11.43277 -11.17782 -11.12518 -11.01369 -10.70587 -10.36714 -10.05807 -8.91917 -8.59714 -8.31575 -6.53645 -0.00071 0.12462 1.12647 1.38532 1.40470 1.45664 1.55552 1.80864 2.09668 2.21682 2.34958 2.52609 2.84695 2.86293 3.37277 3.57033 4.01225 4.12862 4.23643 4.28318 4.32645 4.44658 4.46825 4.55209 4.66734 4.75428 4.85705 4.89162 5.00326 5.03393 5.07150 5.12394 5.22786 5.31089 5.37956 5.46843 5.57162 5.66660 5.76017 5.92116 5.98597 6.21172 6.24483 6.57225 6.58489 6.91042 6.98924 7.27313 7.49821 8.41179 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013442 B = 0.004198 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.526838 B = 6668.460710 C = 8197.012313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.128 3.872 3 H 0.106 0.894 4 C -0.059 4.059 5 C -0.174 4.174 6 C 0.498 3.502 7 O -0.537 6.537 8 O -0.508 6.508 9 N -0.714 5.714 10 C 0.594 3.406 11 O -0.582 6.582 12 C -0.044 4.044 13 C -0.181 4.181 14 C -0.157 4.157 15 C -0.096 4.096 16 C -0.152 4.152 17 C -0.141 4.141 18 C -0.074 4.074 19 C 0.079 3.921 20 N -0.274 5.274 21 C -0.391 4.391 22 H 0.120 0.880 23 C 0.020 3.980 24 N -0.854 5.854 25 Si 0.993 3.007 26 H -0.232 1.232 27 H -0.271 1.271 28 H -0.274 1.274 29 H 0.078 0.922 30 H 0.034 0.966 31 H 0.067 0.933 32 H 0.171 0.829 33 H 0.186 0.814 34 H 0.428 0.572 35 H 0.414 0.586 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.145 0.855 39 H 0.136 0.864 40 H 0.105 0.895 41 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.584 0.370 10.822 11.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.025 3.975 3 H 0.123 0.877 4 C -0.078 4.078 5 C -0.193 4.193 6 C 0.346 3.654 7 O -0.430 6.430 8 O -0.322 6.322 9 N -0.373 5.373 10 C 0.383 3.617 11 O -0.463 6.463 12 C -0.158 4.158 13 C -0.209 4.209 14 C -0.161 4.161 15 C -0.115 4.115 16 C -0.171 4.171 17 C -0.161 4.161 18 C -0.094 4.094 19 C -0.036 4.036 20 N 0.061 4.939 21 C -0.518 4.518 22 H 0.136 0.864 23 C -0.190 4.190 24 N -0.483 5.483 25 Si 0.812 3.188 26 H -0.154 1.154 27 H -0.197 1.197 28 H -0.199 1.199 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.189 0.811 33 H 0.203 0.797 34 H 0.289 0.711 35 H 0.260 0.740 36 H 0.155 0.845 37 H 0.149 0.851 38 H 0.163 0.837 39 H 0.154 0.846 40 H 0.123 0.877 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.171 0.509 10.870 11.096 hybrid contribution -0.486 -0.173 0.171 0.543 sum 1.686 0.337 11.041 11.174 Atomic orbital electron populations 1.21888 0.93841 1.02173 1.01932 1.20842 0.95713 0.98211 0.82712 0.87708 1.24114 0.89951 1.02224 0.91504 1.22230 1.04953 0.88552 1.03563 1.21833 0.76418 0.90258 0.76907 1.90903 1.38754 1.74494 1.38860 1.84577 1.65631 1.27330 1.54622 1.46772 1.66023 1.16499 1.07996 1.17219 0.76197 0.85472 0.82840 1.90696 1.53576 1.15622 1.86457 1.20465 1.13504 0.86290 0.95570 1.20619 1.10490 0.98740 0.91024 1.18422 1.09426 0.93019 0.95279 1.20450 1.00306 0.99069 0.91639 1.20734 1.03917 0.92038 1.00388 1.21025 1.03353 0.99040 0.92678 1.20197 0.99499 0.94947 0.94744 1.18740 1.03603 0.95438 0.85773 1.40148 1.42696 1.04450 1.06629 1.19970 1.40579 0.97728 0.93485 0.86352 1.26699 0.92872 0.99127 1.00336 1.70065 1.27978 1.25118 1.25115 0.84888 0.78971 0.77196 0.77728 1.15434 1.19652 1.19892 0.90308 0.94671 0.91412 0.81125 0.79684 0.71082 0.73993 0.84468 0.85129 0.83726 0.84593 0.87675 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 9.20 71.98 0.66 -3.84 16 2 C 0.13 4.26 2.12 44.24 0.09 4.36 16 3 H 0.11 4.09 4.51 -4.00 -0.02 4.07 16 4 C -0.06 -1.34 9.02 24.53 0.22 -1.12 16 5 C -0.17 -3.28 10.14 23.40 0.24 -3.05 16 6 C 0.50 11.55 8.04 70.11 0.56 12.12 16 7 O -0.54 -16.76 13.45 19.74 0.27 -16.49 16 8 O -0.51 -8.50 13.44 -57.13 -0.77 -9.27 16 9 N -0.71 -28.14 5.01 -449.87 -2.25 -30.40 16 10 C 0.59 28.40 7.72 86.51 0.67 29.06 16 11 O -0.58 -30.22 16.51 -4.23 -0.07 -30.29 16 12 C -0.04 -2.22 6.77 39.91 0.27 -1.95 16 13 C -0.18 -8.95 10.54 22.63 0.24 -8.71 16 14 C -0.16 -7.58 6.16 -21.33 -0.13 -7.72 16 15 C -0.10 -3.86 10.06 22.31 0.22 -3.64 16 16 C -0.15 -5.50 9.97 22.03 0.22 -5.28 16 17 C -0.14 -5.48 10.02 22.32 0.22 -5.26 16 18 C -0.07 -3.46 8.50 22.38 0.19 -3.27 16 19 C 0.08 4.02 6.03 39.06 0.24 4.25 16 20 N -0.27 -13.98 2.82 -331.34 -0.93 -14.92 16 21 C -0.39 -18.21 7.93 84.09 0.67 -17.55 16 22 H 0.12 4.96 6.03 -2.91 -0.02 4.94 16 23 C 0.02 0.89 5.06 84.95 0.43 1.32 16 24 N -0.85 -41.87 10.31 21.67 0.22 -41.65 16 25 Si 0.99 32.88 29.56 68.60 2.03 34.91 16 26 H -0.23 -6.54 7.11 99.48 0.71 -5.83 16 27 H -0.27 -8.98 7.11 99.48 0.71 -8.27 16 28 H -0.27 -9.17 7.11 99.48 0.71 -8.47 16 29 H 0.08 2.25 7.70 -2.39 -0.02 2.23 16 30 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 33 H 0.19 2.05 8.06 -2.91 -0.02 2.02 16 34 H 0.43 3.82 9.11 -74.05 -0.67 3.14 16 35 H 0.41 15.62 4.26 -92.71 -0.40 15.23 16 36 H 0.14 6.37 8.06 -2.91 -0.02 6.35 16 37 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 38 H 0.15 4.00 8.06 -2.91 -0.02 3.97 16 39 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 40 H 0.11 5.08 6.64 -2.91 -0.02 5.06 16 41 H 0.28 12.98 8.31 -92.71 -0.77 12.21 16 Total: -1.00 -70.45 350.90 3.53 -66.91 By element: Atomic # 1 Polarization: 51.42 SS G_CDS: 0.03 Total: 51.45 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 5.01 Total: -10.26 kcal Atomic # 7 Polarization: -83.99 SS G_CDS: -2.96 Total: -86.96 kcal Atomic # 8 Polarization: -55.48 SS G_CDS: -0.57 Total: -56.05 kcal Atomic # 14 Polarization: 32.88 SS G_CDS: 2.03 Total: 34.91 kcal Total: -70.45 3.53 -66.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.997 kcal (2) G-P(sol) polarization free energy of solvation -70.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds