Wall clock time and date at job start Tue Mar 31 2020 15:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50700 * 109.47257 * 2 1 4 4 O 1.21279 * 120.00113 * 0.02562 * 3 2 1 5 5 N 1.34784 * 119.99961 * 180.02562 * 3 2 1 6 6 C 1.47216 * 135.96861 * 359.63695 * 5 3 2 7 7 C 1.52943 * 87.67080 * 153.63941 * 6 5 3 8 8 C 1.47218 * 135.96483 * 179.97438 * 5 3 2 9 9 C 1.53325 * 115.75782 * 270.15395 * 7 6 5 10 10 C 1.55028 * 103.78673 * 229.61584 * 9 7 6 11 11 H 1.09004 * 110.86814 * 262.49611 * 10 9 7 12 12 N 1.46495 * 110.87203 * 139.02572 * 10 9 7 13 13 C 1.34768 * 120.00460 * 155.00065 * 12 10 9 14 14 O 1.21285 * 119.99994 * 359.97438 * 13 12 10 15 15 C 1.50704 * 120.00349 * 179.97438 * 13 12 10 16 16 S 1.80997 * 109.47166 * 180.02562 * 15 13 12 17 17 C 1.76201 * 100.00256 * 180.02562 * 16 15 13 18 18 H 1.08009 * 119.99343 * 359.97438 * 17 16 15 19 19 C 1.38794 * 120.00393 * 179.97438 * 17 16 15 20 20 N 1.31636 * 119.99957 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00072 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46971 * 90.00176 * 21 19 17 23 23 H 1.48503 * 109.47207 * 209.99946 * 21 19 17 24 24 H 1.48493 * 109.47129 * 330.00026 * 21 19 17 25 25 C 1.55054 * 102.13131 * 20.86234 * 10 9 7 26 26 O 1.42838 * 115.80704 * 141.75678 * 7 6 5 27 27 H 1.08996 * 109.47365 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47330 * 299.99977 * 1 2 3 29 29 H 1.09005 * 109.47124 * 59.99773 * 1 2 3 30 30 H 1.09004 * 109.47330 * 240.00023 * 2 1 3 31 31 H 1.08997 * 109.47279 * 120.00509 * 2 1 3 32 32 H 1.09004 * 113.49712 * 268.31344 * 6 5 3 33 33 H 1.09003 * 113.49946 * 38.85235 * 6 5 3 34 34 H 1.08997 * 113.50281 * 321.15102 * 8 5 3 35 35 H 1.09002 * 113.49699 * 91.62496 * 8 5 3 36 36 H 1.08997 * 110.56430 * 348.19568 * 9 7 6 37 37 H 1.09002 * 110.56156 * 110.89015 * 9 7 6 38 38 H 0.97003 * 120.00001 * 334.99476 * 12 10 9 39 39 H 1.09000 * 109.47132 * 299.99637 * 15 13 12 40 40 H 1.08994 * 109.47041 * 59.99982 * 15 13 12 41 41 H 0.96993 * 119.99831 * 180.02562 * 20 19 17 42 42 H 1.08995 * 110.58851 * 82.02753 * 25 10 9 43 43 H 1.08998 * 110.58814 * 204.78616 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.5850 0.8544 0.0053 7 6 5.2895 2.0264 -0.6798 8 6 4.2110 2.8665 -0.0012 9 6 5.2557 2.0201 -2.2127 10 6 6.7347 2.2514 -2.6158 11 1 6.9147 3.3016 -2.8458 12 7 7.1061 1.4004 -3.7488 13 6 8.1140 1.7668 -4.5650 14 8 8.7133 2.8014 -4.3618 15 6 8.4965 0.8909 -5.7303 16 16 9.8737 1.6483 -6.6278 17 6 10.1063 0.4504 -7.8989 18 1 9.4769 -0.4265 -7.9361 19 6 11.0983 0.6337 -8.8521 20 7 11.8651 1.7027 -8.8070 21 14 11.3453 -0.6367 -10.1992 22 1 10.5017 -0.2868 -11.3702 23 1 12.7734 -0.6556 -10.6060 24 1 10.9572 -1.9774 -9.6924 25 6 7.4928 1.8246 -1.3324 26 8 6.6323 2.2754 -0.2612 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 4.9629 0.6452 1.0061 33 1 4.5182 -0.0384 -0.6164 34 1 3.8286 3.6718 -0.6283 35 1 4.4865 3.2044 0.9979 36 1 4.9037 1.0576 -2.5839 37 1 4.6243 2.8268 -2.5850 38 1 6.6266 0.5730 -3.9116 39 1 8.7980 -0.0903 -5.3637 40 1 7.6425 0.7824 -6.3988 41 1 12.5581 1.8310 -9.4734 42 1 7.6107 0.7415 -1.2991 43 1 8.4641 2.3164 -1.2794 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001068711237.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:17 Heat of formation + Delta-G solvation = -76.534769 kcal Electronic energy + Delta-G solvation = -25033.998380 eV Core-core repulsion = 21207.030147 eV Total energy + Delta-G solvation = -3826.968233 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.61904 -39.74280 -38.92631 -37.20450 -34.66505 -33.22884 -32.47528 -31.34293 -30.17914 -28.52461 -26.80264 -26.61704 -25.52861 -24.04092 -22.19920 -20.93369 -20.48930 -19.19876 -18.04699 -17.68147 -16.99727 -16.84981 -16.33657 -16.27383 -15.60424 -15.56598 -15.13653 -14.84806 -14.52693 -14.25469 -14.06130 -13.83285 -13.64849 -13.39313 -13.18728 -12.90516 -12.67966 -12.48596 -12.30139 -12.28315 -12.09527 -11.84353 -11.65552 -11.61544 -11.19789 -11.10082 -11.07215 -10.80712 -10.33368 -10.04204 -9.87266 -9.56827 -9.23624 -9.12943 -9.06755 -8.30370 -6.56047 -6.26363 -3.97654 2.17542 2.25886 2.83210 2.91284 3.19064 3.21570 3.26728 3.41185 3.62518 3.70833 3.87319 4.08134 4.13806 4.15901 4.57417 4.60803 4.66852 4.74681 4.83212 4.88458 4.92557 5.02436 5.05839 5.09028 5.14141 5.20208 5.22685 5.29376 5.38998 5.42728 5.49385 5.51290 5.61468 5.76516 5.79904 5.80347 6.04853 6.29778 6.53001 7.21502 7.50637 7.55096 7.70529 8.30299 8.44351 9.19040 10.81009 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.022799 B = 0.002047 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.851529 B =13678.582683 C =14473.176709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.137 4.137 3 C 0.544 3.456 4 O -0.536 6.536 5 N -0.645 5.645 6 C 0.088 3.912 7 C 0.069 3.931 8 C 0.112 3.888 9 C -0.131 4.131 10 C 0.117 3.883 11 H 0.111 0.889 12 N -0.729 5.729 13 C 0.534 3.466 14 O -0.512 6.512 15 C -0.154 4.154 16 S -0.059 6.059 17 C -0.537 4.537 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.035 3.965 26 O -0.346 6.346 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.400 0.600 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.269 0.731 42 H 0.069 0.931 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.057 -5.939 19.083 26.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.177 4.177 3 C 0.335 3.665 4 O -0.413 6.413 5 N -0.383 5.383 6 C -0.036 4.036 7 C 0.027 3.973 8 C -0.010 4.010 9 C -0.169 4.169 10 C 0.011 3.989 11 H 0.129 0.871 12 N -0.385 5.385 13 C 0.320 3.680 14 O -0.385 6.385 15 C -0.305 4.305 16 S 0.168 5.832 17 C -0.685 4.685 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.746 3.254 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.043 4.043 26 O -0.262 6.262 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.115 0.885 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.235 0.765 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.498 -3.548 19.540 26.469 hybrid contribution -0.674 -2.593 -1.268 2.964 sum -18.172 -6.141 18.272 26.492 Atomic orbital electron populations 1.21554 0.92706 1.01836 1.03482 1.21582 0.98603 0.93035 1.04448 1.20376 0.78952 0.92016 0.75146 1.90733 1.53651 1.46922 1.49946 1.49354 1.03780 1.11073 1.74070 1.23599 0.81839 0.96127 1.02020 1.22993 0.84224 0.96201 0.93850 1.23030 0.85886 0.90301 1.01813 1.22774 0.97176 1.04495 0.92416 1.22465 0.92344 0.97697 0.86413 0.87122 1.45940 1.37333 1.25895 1.29330 1.20403 0.78662 0.86321 0.82598 1.90722 1.51373 1.24451 1.71993 1.23535 1.06247 1.02466 0.98208 1.85425 1.35553 1.31370 1.30885 1.22854 1.22046 1.09213 1.14362 0.90902 1.24999 0.94804 0.96191 0.97605 1.70013 1.19197 1.26186 1.34802 0.86159 0.77647 0.80711 0.80930 1.20253 1.20729 1.19698 1.24147 0.95091 1.00070 0.84944 1.88830 1.14074 1.82982 1.40332 0.91813 0.91942 0.91832 0.88827 0.88913 0.88530 0.89706 0.89388 0.88672 0.89348 0.88836 0.76542 0.89080 0.89104 0.92128 0.91255 0.87552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.20 37.15 0.34 -0.51 16 2 C -0.14 -0.79 6.24 -27.89 -0.17 -0.96 16 3 C 0.54 5.12 8.08 -10.98 -0.09 5.03 16 4 O -0.54 -7.26 16.76 5.56 0.09 -7.17 16 5 N -0.64 -5.09 3.65 -185.11 -0.68 -5.76 16 6 C 0.09 0.50 7.95 -7.90 -0.06 0.43 16 7 C 0.07 0.51 1.66 -90.68 -0.15 0.36 16 8 C 0.11 0.89 8.13 -8.06 -0.07 0.83 16 9 C -0.13 -0.96 6.20 -25.49 -0.16 -1.11 16 10 C 0.12 1.18 3.51 -65.78 -0.23 0.95 16 11 H 0.11 1.36 7.54 -51.93 -0.39 0.97 16 12 N -0.73 -8.17 5.19 -51.72 -0.27 -8.44 16 13 C 0.53 8.98 7.85 -10.99 -0.09 8.90 16 14 O -0.51 -10.76 15.50 5.55 0.09 -10.67 16 15 C -0.15 -2.88 6.16 36.01 0.22 -2.66 16 16 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 17 C -0.54 -14.86 9.50 30.94 0.29 -14.56 16 18 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 19 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 20 N -0.87 -25.66 13.22 55.49 0.73 -24.92 16 21 Si 0.92 20.95 29.55 -169.99 -5.02 15.92 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 25 C 0.04 0.33 7.42 38.24 0.28 0.62 16 26 O -0.35 -3.23 11.32 -35.23 -0.40 -3.63 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 29 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.33 7.94 -51.93 -0.41 -0.08 16 34 H 0.09 0.73 7.91 -51.93 -0.41 0.32 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.51 7.45 -51.93 -0.39 0.12 16 37 H 0.09 0.71 7.81 -51.93 -0.41 0.31 16 38 H 0.40 3.24 8.41 -40.82 -0.34 2.90 16 39 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 40 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 41 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 377.14 15.07 5.68 5.68 Total: -1.00 -35.90 377.14 -8.49 -44.40 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -6.54 Total: -0.91 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 0.03 Total: -0.75 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: -0.21 Total: -39.13 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.22 Total: -21.46 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.90 -8.49 -44.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001068711237.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.139 kcal (2) G-P(sol) polarization free energy of solvation -35.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds