Wall clock time and date at job start Tue Mar 31 2020 15:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99875 * 2 1 4 4 H 1.48492 * 109.47002 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46651 * 299.99716 * 3 2 1 6 6 H 1.48498 * 109.47056 * 59.99822 * 3 2 1 7 7 C 1.37884 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99712 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00004 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47197 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47067 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.47341 * 305.00231 * 11 10 9 13 13 N 1.46905 * 109.47270 * 65.00352 * 11 10 9 14 14 C 1.50704 * 109.47244 * 185.00168 * 11 10 9 15 15 O 1.21288 * 119.99922 * 260.00176 * 14 11 10 16 16 N 1.34776 * 119.99868 * 80.00072 * 14 11 10 17 17 C 1.40112 * 120.00074 * 184.62982 * 16 14 11 18 18 C 1.38842 * 120.02116 * 144.91139 * 17 16 14 19 19 C 1.38079 * 119.99143 * 180.25671 * 18 17 16 20 20 C 1.38726 * 120.01027 * 359.43993 * 19 18 17 21 21 O 1.35971 * 119.98863 * 180.25673 * 20 19 18 22 22 C 1.42905 * 116.99525 * 0.30283 * 21 20 19 23 23 C 1.53003 * 109.47099 * 179.97438 * 22 21 20 24 24 F 1.39893 * 109.47096 * 300.00195 * 23 22 21 25 25 F 1.39899 * 109.46924 * 59.99897 * 23 22 21 26 26 C 1.38724 * 120.03049 * 0.56132 * 20 19 18 27 27 C 1.38084 * 120.01269 * 359.72040 * 26 20 19 28 28 H 0.96994 * 120.00358 * 0.02562 * 1 2 3 29 29 H 1.09009 * 109.46892 * 60.00330 * 9 7 2 30 30 H 1.09004 * 109.47431 * 300.00302 * 9 7 2 31 31 H 1.08996 * 109.46928 * 60.00176 * 10 9 7 32 32 H 1.08998 * 109.47427 * 300.00102 * 10 9 7 33 33 H 1.00895 * 110.99883 * 59.99839 * 13 11 10 34 34 H 1.00901 * 110.99769 * 183.95328 * 13 11 10 35 35 H 0.96995 * 119.99953 * 4.62072 * 16 14 11 36 36 H 1.08004 * 119.99997 * 359.97405 * 18 17 16 37 37 H 1.07994 * 119.99906 * 179.70042 * 19 18 17 38 38 H 1.09004 * 109.47385 * 299.99662 * 22 21 20 39 39 H 1.09003 * 109.47080 * 59.99785 * 22 21 20 40 40 H 1.08997 * 109.47207 * 179.97438 * 23 22 21 41 41 H 1.07996 * 119.99195 * 179.70340 * 26 20 19 42 42 H 1.08000 * 120.00937 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0015 11 6 1.4805 -4.9870 0.0020 12 1 0.7887 -5.0069 0.8441 13 7 0.7283 -5.1187 -1.2530 14 6 2.4552 -6.1298 0.1256 15 8 2.7867 -6.7535 -0.8604 16 7 2.9586 -6.4586 1.3318 17 6 3.9371 -7.4561 1.4343 18 6 4.9440 -7.3465 2.3840 19 6 5.9111 -8.3273 2.4809 20 6 5.8702 -9.4278 1.6374 21 8 6.8198 -10.3959 1.7367 22 6 7.8255 -10.2179 2.7362 23 6 8.7975 -11.3989 2.6976 24 9 8.0994 -12.5857 2.9448 25 9 9.3998 -11.4662 1.4367 26 6 4.8645 -9.5381 0.6883 27 6 3.9001 -8.5551 0.5864 28 1 -0.4850 0.8400 -0.0004 29 1 0.6242 -2.5575 -0.8881 30 1 0.6248 -2.5563 0.8920 31 1 2.8727 -3.6038 0.8909 32 1 2.8715 -3.6047 -0.8890 33 1 1.3478 -5.1031 -2.0492 34 1 0.1639 -5.9552 -1.2502 35 1 2.6435 -6.0046 2.1290 36 1 4.9734 -6.4919 3.0437 37 1 6.6972 -8.2397 3.2163 38 1 8.3693 -9.2930 2.5438 39 1 7.3563 -10.1659 3.7187 40 1 9.5649 -11.2629 3.4596 41 1 4.8360 -10.3928 0.0287 42 1 3.1174 -8.6408 -0.1528 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424133708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:32 Heat of formation + Delta-G solvation = -157.513281 kcal Electronic energy + Delta-G solvation = -26630.651540 eV Core-core repulsion = 22246.331429 eV Total energy + Delta-G solvation = -4384.320111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.139 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.40825 -47.43926 -40.84870 -39.89318 -37.75077 -35.31563 -34.53817 -32.85243 -31.58230 -30.80939 -30.17392 -28.88184 -26.37417 -24.52369 -23.90558 -22.74738 -22.05892 -20.62832 -19.91321 -19.04263 -17.98821 -17.90322 -17.54488 -17.27028 -16.90193 -16.23120 -15.97681 -15.58778 -15.56258 -15.08089 -14.59069 -14.37214 -14.28137 -14.22106 -13.78824 -13.74904 -13.59013 -13.47929 -13.03899 -12.97501 -12.77843 -12.38445 -12.08923 -11.80286 -11.64447 -11.56698 -11.20762 -10.94461 -10.73652 -10.57523 -10.23755 -10.01779 -9.85328 -9.43927 -9.23001 -9.03235 -8.44935 -8.27736 -7.93995 -5.97559 -3.99815 1.08760 1.10941 2.46896 2.57594 3.05251 3.23755 3.31276 3.39123 3.42751 3.56306 3.58508 3.87571 4.29315 4.45839 4.46731 4.56051 4.63978 4.72212 4.76758 4.92857 5.05640 5.19498 5.37448 5.37898 5.42268 5.65643 5.72333 5.74718 6.00140 6.14538 6.27752 6.35895 6.57513 6.64042 7.00649 7.01998 7.23823 7.43475 7.70356 7.72500 7.91247 8.08102 8.10997 8.44096 9.08263 9.63616 11.13294 Molecular weight = 328.14amu Principal moments of inertia in cm(-1) A = 0.021010 B = 0.001952 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.362702 B =14342.967278 C =15208.629093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.523 4.523 8 H 0.052 0.948 9 C 0.031 3.969 10 C -0.096 4.096 11 C 0.081 3.919 12 H 0.101 0.899 13 N -0.806 5.806 14 C 0.483 3.517 15 O -0.535 6.535 16 N -0.672 5.672 17 C 0.118 3.882 18 C -0.106 4.106 19 C -0.189 4.189 20 C 0.105 3.895 21 O -0.305 6.305 22 C 0.005 3.995 23 C 0.273 3.727 24 F -0.198 7.198 25 F -0.197 7.197 26 C -0.128 4.128 27 C -0.082 4.082 28 H 0.259 0.741 29 H 0.036 0.964 30 H 0.014 0.986 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.349 0.651 34 H 0.335 0.665 35 H 0.413 0.587 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.131 0.869 41 H 0.134 0.866 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.147 -22.667 9.656 28.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.006 4.006 10 C -0.134 4.134 11 C -0.035 4.035 12 H 0.119 0.881 13 N -0.333 5.333 14 C 0.270 3.730 15 O -0.411 6.411 16 N -0.318 5.318 17 C 0.024 3.976 18 C -0.127 4.127 19 C -0.208 4.208 20 C 0.060 3.940 21 O -0.219 6.219 22 C -0.072 4.072 23 C 0.220 3.780 24 F -0.179 7.179 25 F -0.179 7.179 26 C -0.147 4.147 27 C -0.102 4.102 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.163 0.837 34 H 0.147 0.853 35 H 0.250 0.750 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.149 0.851 41 H 0.152 0.848 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 13.841 -22.438 8.964 27.846 hybrid contribution 1.033 0.405 0.471 1.205 sum 14.874 -22.033 9.436 28.208 Atomic orbital electron populations 1.69977 1.05941 1.26360 1.50825 1.24999 0.94818 0.99098 0.95457 0.86590 0.80088 0.84061 0.77557 1.19871 1.21030 1.21090 1.21300 0.92933 0.91274 1.50587 0.92931 1.19025 0.93530 0.89781 0.98284 1.21683 0.98909 0.91999 1.00837 1.21883 0.93317 0.92879 0.95408 0.88086 1.58986 1.26819 1.44357 1.03176 1.23091 0.82145 0.85664 0.82069 1.90643 1.59937 1.53396 1.37096 1.43796 1.39717 1.37563 1.10751 1.17807 0.91446 0.89790 0.98592 1.20746 0.92903 0.99258 0.99761 1.20952 1.01877 0.95521 1.02426 1.18917 0.90091 0.88510 0.96478 1.86131 1.36942 1.44565 1.54272 1.23992 0.90373 0.98785 0.94008 1.22039 0.90503 0.81762 0.83742 1.93028 1.80896 1.49813 1.94197 1.93036 1.84184 1.96543 1.44106 1.20340 0.94277 1.00895 0.99159 1.21151 0.99156 0.90799 0.99075 0.93118 0.94590 0.96810 0.92744 0.92714 0.83651 0.85298 0.75035 0.85033 0.85264 0.88842 0.88883 0.85150 0.84831 0.83585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.03 0.77 4.86 -27.89 -0.14 0.63 16 10 C -0.10 -1.85 4.78 -26.73 -0.13 -1.98 16 11 C 0.08 1.27 3.15 -68.86 -0.22 1.05 16 12 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 13 N -0.81 -12.81 8.44 -5.65 -0.05 -12.86 16 14 C 0.48 7.12 6.91 -10.98 -0.08 7.05 16 15 O -0.53 -9.14 13.69 5.55 0.08 -9.06 16 16 N -0.67 -8.13 5.34 -9.83 -0.05 -8.18 16 17 C 0.12 1.45 6.30 -83.62 -0.53 0.92 16 18 C -0.11 -1.08 9.96 -39.42 -0.39 -1.48 16 19 C -0.19 -1.75 9.03 -39.46 -0.36 -2.11 16 20 C 0.10 1.14 6.69 -39.22 -0.26 0.88 16 21 O -0.31 -3.12 10.03 -19.65 -0.20 -3.32 16 22 C 0.01 0.03 4.96 37.16 0.18 0.21 16 23 C 0.27 1.48 5.63 37.16 0.21 1.69 16 24 F -0.20 -1.65 17.28 2.25 0.04 -1.61 16 25 F -0.20 -1.71 17.28 2.25 0.04 -1.67 16 26 C -0.13 -1.50 9.98 -39.46 -0.39 -1.90 16 27 C -0.08 -1.05 8.70 -39.41 -0.34 -1.40 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.04 0.97 7.75 -51.92 -0.40 0.57 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.35 5.66 8.58 -39.29 -0.34 5.33 16 34 H 0.34 4.55 9.06 -39.29 -0.36 4.19 16 35 H 0.41 3.93 8.82 -40.82 -0.36 3.57 16 36 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 37 H 0.13 0.80 6.29 -52.49 -0.33 0.47 16 38 H 0.09 0.38 7.65 -51.93 -0.40 -0.02 16 39 H 0.09 0.34 7.67 -51.93 -0.40 -0.06 16 40 H 0.13 0.09 8.14 -51.93 -0.42 -0.33 16 41 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.15 2.03 6.22 -52.49 -0.33 1.71 16 LS Contribution 366.64 15.07 5.53 5.53 Total: -1.00 -34.72 366.64 -7.16 -41.88 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.41 Total: 8.34 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -2.85 Total: -9.71 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.64 Total: -46.82 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -0.12 Total: -12.38 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.08 Total: -3.28 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.72 -7.16 -41.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424133708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.635 kcal (2) G-P(sol) polarization free energy of solvation -34.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds