Wall clock time and date at job start Tue Mar 31 2020 14:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40366 * 126.64432 * 2 1 4 4 C 1.35132 * 107.11154 * 180.02562 * 3 2 1 5 5 C 1.50704 * 125.61536 * 180.02562 * 4 3 2 6 6 F 1.39899 * 109.47102 * 209.99656 * 5 4 3 7 7 F 1.39894 * 109.46982 * 329.99973 * 5 4 3 8 8 O 1.33929 * 108.76726 * 359.76737 * 4 3 2 9 9 C 1.34907 * 109.38758 * 0.38405 * 8 4 3 10 10 C 1.46660 * 125.98996 * 179.88651 * 9 8 4 11 11 O 1.21696 * 119.99858 * 173.25698 * 10 9 8 12 12 N 1.34770 * 120.00152 * 352.98137 * 10 9 8 13 13 C 1.46502 * 119.99865 * 354.73419 * 12 10 9 14 14 C 1.46500 * 120.00545 * 174.73505 * 12 10 9 15 15 H 1.09010 * 110.63467 * 1.68816 * 14 12 10 16 16 C 1.55151 * 110.72288 * 125.01978 * 14 12 10 17 17 C 1.54914 * 101.58046 * 153.86690 * 16 14 12 18 18 N 1.47416 * 104.83136 * 322.99495 * 17 16 14 19 19 C 1.36943 * 125.64703 * 204.09337 * 18 17 16 20 20 H 1.08001 * 120.00018 * 180.02562 * 19 18 17 21 21 C 1.38817 * 119.99814 * 0.03937 * 19 18 17 22 22 N 1.31616 * 119.99879 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 119.99788 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47039 * 90.00052 * 23 21 19 25 25 H 1.48493 * 109.47189 * 209.99876 * 23 21 19 26 26 H 1.48501 * 109.47516 * 330.00083 * 23 21 19 27 27 C 1.47021 * 108.70889 * 24.12709 * 18 17 16 28 28 H 1.09007 * 109.47116 * 269.97419 * 1 2 3 29 29 H 1.09005 * 109.46971 * 29.97319 * 1 2 3 30 30 H 1.08994 * 109.47693 * 149.97397 * 1 2 3 31 31 H 1.07991 * 126.44602 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.46875 * 89.99690 * 5 4 3 33 33 H 1.08995 * 109.47039 * 85.16354 * 13 12 10 34 34 H 1.09002 * 109.47338 * 205.16621 * 13 12 10 35 35 H 1.09004 * 109.47342 * 325.16609 * 13 12 10 36 36 H 1.09002 * 111.00830 * 271.94663 * 16 14 12 37 37 H 1.09000 * 111.00515 * 35.79564 * 16 14 12 38 38 H 1.09001 * 110.36429 * 204.15462 * 17 16 14 39 39 H 1.09000 * 110.45758 * 81.88175 * 17 16 14 40 40 H 0.97004 * 119.99947 * 179.97438 * 22 21 19 41 41 H 1.09005 * 109.88584 * 239.52822 * 27 18 17 42 42 H 1.08999 * 109.88447 * 118.35609 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 -0.0006 5 6 4.8551 1.5356 -0.0002 6 9 5.8904 0.8652 -0.6603 7 9 4.5848 2.7399 -0.6588 8 8 3.6004 -0.6647 0.0042 9 6 2.3220 -1.0955 -0.0006 10 6 1.8842 -2.4953 0.0000 11 8 0.7032 -2.7634 0.1191 12 7 2.7893 -3.4845 -0.1369 13 6 4.1934 -3.1611 -0.4017 14 6 2.3691 -4.8831 -0.0211 15 1 1.2938 -4.9486 0.1459 16 6 2.7825 -5.6868 -1.2821 17 6 2.8941 -7.1232 -0.7127 18 7 3.4550 -6.9505 0.6396 19 6 4.1519 -7.8976 1.3414 20 1 4.5230 -7.6725 2.3304 21 6 4.3817 -9.1470 0.7816 22 7 3.9302 -9.4210 -0.4239 23 14 5.3317 -10.4391 1.7392 24 1 4.3865 -11.2503 2.5479 25 1 6.0576 -11.3229 0.7922 26 1 6.3062 -9.7714 2.6391 27 6 3.1417 -5.5934 1.1104 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3633 0.8903 -0.5134 30 1 -0.3634 -0.8897 -0.5142 31 1 2.0307 2.1595 -0.0004 32 1 5.1534 1.7426 1.0275 33 1 4.7057 -2.9681 0.5408 34 1 4.6700 -3.9998 -0.9092 35 1 4.2493 -2.2747 -1.0337 36 1 2.0125 -5.6302 -2.0515 37 1 3.7429 -5.3434 -1.6668 38 1 3.5642 -7.7240 -1.3276 39 1 1.9101 -7.5891 -0.6587 40 1 4.0911 -10.2939 -0.8153 41 1 4.0638 -5.0534 1.3253 42 1 2.5227 -5.6454 2.0060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033166314.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:26 Heat of formation + Delta-G solvation = -79.041695 kcal Electronic energy + Delta-G solvation = -28420.040103 eV Core-core repulsion = 24039.122775 eV Total energy + Delta-G solvation = -4380.917328 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.139 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.55261 -47.57457 -43.14887 -39.79068 -37.45941 -35.18727 -34.23067 -32.37203 -31.73029 -29.34037 -28.15023 -27.80950 -27.11212 -26.17796 -24.46119 -22.23007 -21.88507 -20.25765 -20.08922 -19.18270 -18.23994 -17.94505 -17.54155 -17.41230 -17.03231 -16.60825 -16.22315 -14.93740 -14.76767 -14.60232 -14.36760 -14.19264 -14.03218 -13.90361 -13.70931 -13.43102 -13.33246 -13.07469 -13.03234 -12.92819 -12.49428 -12.37404 -11.97812 -11.88191 -11.75819 -11.56871 -11.09183 -10.91621 -10.83756 -10.51738 -10.14571 -10.09119 -10.01465 -9.86521 -9.59119 -9.05279 -8.69227 -8.44469 -6.88894 -5.69012 -3.11567 0.61859 1.80865 1.94478 2.91088 3.02131 3.32372 3.38495 3.43524 3.45340 3.60381 4.15443 4.26390 4.38718 4.46536 4.52436 4.93804 5.11314 5.17844 5.29387 5.34100 5.39078 5.50340 5.52509 5.58228 5.63335 5.69934 5.73819 5.81325 5.94532 6.09088 6.16180 6.28973 6.45171 6.48447 6.52220 6.62615 6.89470 7.37108 7.46842 7.58440 7.80058 8.00672 8.30960 9.17498 9.77956 10.41668 11.34770 Molecular weight = 328.14amu Principal moments of inertia in cm(-1) A = 0.019203 B = 0.002844 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.751309 B = 9842.972353 C =10794.565093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.098 4.098 3 C -0.165 4.165 4 C -0.084 4.084 5 C 0.363 3.637 6 F -0.188 7.188 7 F -0.184 7.184 8 O -0.134 6.134 9 C -0.045 4.045 10 C 0.596 3.404 11 O -0.517 6.517 12 N -0.587 5.587 13 C 0.074 3.926 14 C 0.125 3.875 15 H 0.107 0.893 16 C -0.153 4.153 17 C 0.153 3.847 18 N -0.602 5.602 19 C -0.223 4.223 20 H 0.078 0.922 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.916 3.084 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.130 3.870 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.163 0.837 32 H 0.141 0.859 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.111 0.889 39 H 0.016 0.984 40 H 0.253 0.747 41 H 0.029 0.971 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.839 23.998 -0.584 24.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.101 4.101 3 C -0.184 4.184 4 C -0.137 4.137 5 C 0.309 3.691 6 F -0.169 7.169 7 F -0.165 7.165 8 O -0.030 6.030 9 C -0.098 4.098 10 C 0.383 3.617 11 O -0.395 6.395 12 N -0.317 5.317 13 C -0.069 4.069 14 C 0.023 3.977 15 H 0.125 0.875 16 C -0.192 4.192 17 C 0.028 3.972 18 N -0.329 5.329 19 C -0.352 4.352 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.746 3.254 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.207 1.207 27 C 0.003 3.997 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.181 0.819 32 H 0.158 0.842 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.128 0.872 39 H 0.034 0.966 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -1.081 23.410 -0.575 23.442 hybrid contribution 0.555 -0.417 0.420 0.811 sum -0.527 22.993 -0.155 23.000 Atomic orbital electron populations 1.20410 0.87546 1.03677 1.03197 1.20637 0.98020 0.90377 1.01025 1.21473 0.90633 1.00721 1.05619 1.23070 0.97041 0.83086 1.10533 1.19565 0.79603 0.75933 0.93959 1.93077 1.59556 1.80597 1.83654 1.93061 1.94073 1.45365 1.83980 1.84274 1.28708 1.19698 1.70308 1.22260 0.80700 0.95344 1.11490 1.16588 0.85671 0.81539 0.77915 1.90850 1.15677 1.81747 1.51253 1.47806 1.08871 1.06547 1.68504 1.21939 0.81180 1.01998 1.01741 1.22390 1.00476 0.77216 0.97642 0.87519 1.23423 1.00545 0.99345 0.95901 1.21951 0.98257 0.90246 0.86734 1.44431 1.63914 1.08988 1.15526 1.19069 1.26292 0.91573 0.98229 0.90437 1.24794 1.01114 0.97602 0.97037 1.69776 1.50522 1.21749 1.14979 0.86052 0.79320 0.81388 0.78599 1.21587 1.21620 1.20682 1.21514 0.96324 0.87658 0.94205 0.90476 0.91349 0.89396 0.81918 0.84183 0.92088 0.89330 0.90945 0.91805 0.91498 0.87181 0.96570 0.93638 0.95344 0.95567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 9.75 36.01 0.35 -0.58 16 2 C -0.10 -1.13 6.20 -104.43 -0.65 -1.78 16 3 C -0.17 -1.54 10.38 -39.89 -0.41 -1.95 16 4 C -0.08 -0.82 6.93 -35.41 -0.25 -1.06 16 5 C 0.36 2.56 5.82 36.01 0.21 2.77 16 6 F -0.19 -1.77 17.31 2.25 0.04 -1.73 16 7 F -0.18 -1.43 17.02 2.25 0.04 -1.39 16 8 O -0.13 -1.62 7.53 5.02 0.04 -1.58 16 9 C -0.05 -0.61 6.69 -36.80 -0.25 -0.86 16 10 C 0.60 9.50 7.63 -12.86 -0.10 9.40 16 11 O -0.52 -9.27 14.21 5.19 0.07 -9.20 16 12 N -0.59 -9.39 2.88 -173.38 -0.50 -9.89 16 13 C 0.07 1.01 8.10 59.85 0.48 1.50 16 14 C 0.13 2.32 3.36 -66.10 -0.22 2.10 16 15 H 0.11 2.07 7.00 -51.92 -0.36 1.71 16 16 C -0.15 -2.90 6.59 -24.58 -0.16 -3.06 16 17 C 0.15 3.67 5.89 -2.53 -0.01 3.66 16 18 N -0.60 -15.29 3.39 -170.07 -0.58 -15.86 16 19 C -0.22 -6.17 10.27 -15.05 -0.15 -6.32 16 20 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 21 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 22 N -0.92 -26.51 10.09 55.49 0.56 -25.95 16 23 Si 0.92 21.86 29.55 -169.99 -5.02 16.84 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.13 2.75 6.88 -3.06 -0.02 2.73 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 1.06 6.60 -51.93 -0.34 0.72 16 31 H 0.16 1.08 8.06 -52.49 -0.42 0.65 16 32 H 0.14 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16 34 H 0.09 1.26 6.12 -51.93 -0.32 0.94 16 35 H 0.07 0.90 5.96 -51.93 -0.31 0.59 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.07 1.21 6.14 -51.93 -0.32 0.89 16 38 H 0.11 2.94 5.87 -51.93 -0.30 2.64 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.03 0.59 7.05 -51.93 -0.37 0.22 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 349.13 15.07 5.26 5.26 Total: -1.00 -31.53 349.13 -6.61 -38.14 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -5.25 Total: -0.80 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -1.28 Total: 6.17 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.52 Total: -51.70 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.11 Total: -10.78 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.08 Total: -3.12 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.53 -6.61 -38.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033166314.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.901 kcal (2) G-P(sol) polarization free energy of solvation -31.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds