Wall clock time and date at job start Tue Mar 31 2020 14:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40366 * 126.64432 * 2 1 4 4 C 1.35132 * 107.11154 * 180.02562 * 3 2 1 5 5 C 1.50704 * 125.61536 * 180.02562 * 4 3 2 6 6 F 1.39899 * 109.47102 * 209.99656 * 5 4 3 7 7 F 1.39894 * 109.46982 * 329.99973 * 5 4 3 8 8 O 1.33929 * 108.76726 * 359.76737 * 4 3 2 9 9 C 1.34907 * 109.38758 * 0.38405 * 8 4 3 10 10 C 1.46660 * 125.98996 * 179.88651 * 9 8 4 11 11 O 1.21696 * 119.99858 * 173.25698 * 10 9 8 12 12 N 1.34770 * 120.00152 * 352.98137 * 10 9 8 13 13 C 1.46502 * 119.99865 * 354.73419 * 12 10 9 14 14 C 1.46500 * 120.00545 * 174.73505 * 12 10 9 15 15 H 1.09010 * 110.63467 * 1.68816 * 14 12 10 16 16 C 1.55151 * 110.72288 * 125.01978 * 14 12 10 17 17 C 1.54914 * 101.58046 * 153.86690 * 16 14 12 18 18 N 1.47416 * 104.83136 * 322.99495 * 17 16 14 19 19 C 1.36943 * 125.64703 * 204.09337 * 18 17 16 20 20 H 1.08001 * 120.00018 * 180.02562 * 19 18 17 21 21 C 1.38817 * 119.99814 * 0.03937 * 19 18 17 22 22 N 1.31616 * 119.99879 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 119.99788 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47039 * 90.00052 * 23 21 19 25 25 H 1.48493 * 109.47189 * 209.99876 * 23 21 19 26 26 H 1.48501 * 109.47516 * 330.00083 * 23 21 19 27 27 C 1.47021 * 108.70889 * 24.12709 * 18 17 16 28 28 H 1.09007 * 109.47116 * 269.97419 * 1 2 3 29 29 H 1.09005 * 109.46971 * 29.97319 * 1 2 3 30 30 H 1.08994 * 109.47693 * 149.97397 * 1 2 3 31 31 H 1.07991 * 126.44602 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.46875 * 89.99690 * 5 4 3 33 33 H 1.08995 * 109.47039 * 85.16354 * 13 12 10 34 34 H 1.09002 * 109.47338 * 205.16621 * 13 12 10 35 35 H 1.09004 * 109.47342 * 325.16609 * 13 12 10 36 36 H 1.09002 * 111.00830 * 271.94663 * 16 14 12 37 37 H 1.09000 * 111.00515 * 35.79564 * 16 14 12 38 38 H 1.09001 * 110.36429 * 204.15462 * 17 16 14 39 39 H 1.09000 * 110.45758 * 81.88175 * 17 16 14 40 40 H 0.97004 * 119.99947 * 179.97438 * 22 21 19 41 41 H 1.09005 * 109.88584 * 239.52822 * 27 18 17 42 42 H 1.08999 * 109.88447 * 118.35609 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 -0.0006 5 6 4.8551 1.5356 -0.0002 6 9 5.8904 0.8652 -0.6603 7 9 4.5848 2.7399 -0.6588 8 8 3.6004 -0.6647 0.0042 9 6 2.3220 -1.0955 -0.0006 10 6 1.8842 -2.4953 0.0000 11 8 0.7032 -2.7634 0.1191 12 7 2.7893 -3.4845 -0.1369 13 6 4.1934 -3.1611 -0.4017 14 6 2.3691 -4.8831 -0.0211 15 1 1.2938 -4.9486 0.1459 16 6 2.7825 -5.6868 -1.2821 17 6 2.8941 -7.1232 -0.7127 18 7 3.4550 -6.9505 0.6396 19 6 4.1519 -7.8976 1.3414 20 1 4.5230 -7.6725 2.3304 21 6 4.3817 -9.1470 0.7816 22 7 3.9302 -9.4210 -0.4239 23 14 5.3317 -10.4391 1.7392 24 1 4.3865 -11.2503 2.5479 25 1 6.0576 -11.3229 0.7922 26 1 6.3062 -9.7714 2.6391 27 6 3.1417 -5.5934 1.1104 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3633 0.8903 -0.5134 30 1 -0.3634 -0.8897 -0.5142 31 1 2.0307 2.1595 -0.0004 32 1 5.1534 1.7426 1.0275 33 1 4.7057 -2.9681 0.5408 34 1 4.6700 -3.9998 -0.9092 35 1 4.2493 -2.2747 -1.0337 36 1 2.0125 -5.6302 -2.0515 37 1 3.7429 -5.3434 -1.6668 38 1 3.5642 -7.7240 -1.3276 39 1 1.9101 -7.5891 -0.6587 40 1 4.0911 -10.2939 -0.8153 41 1 4.0638 -5.0534 1.3253 42 1 2.5227 -5.6454 2.0060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033166314.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:25 Heat of formation + Delta-G solvation = -97.348058 kcal Electronic energy + Delta-G solvation = -28420.833927 eV Core-core repulsion = 24039.122775 eV Total energy + Delta-G solvation = -4381.711151 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.139 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.13925 -48.17497 -44.00331 -41.10452 -39.04805 -36.57683 -35.21538 -34.13716 -32.68424 -31.16308 -29.50272 -28.87167 -28.07378 -27.47760 -26.25363 -23.32539 -22.72508 -22.15652 -21.21177 -20.44061 -18.99109 -18.90169 -18.82850 -18.37759 -18.12941 -17.63481 -17.45317 -16.75132 -16.15241 -15.92567 -15.64783 -15.28038 -14.97437 -14.76183 -14.54697 -14.53258 -14.41187 -14.23331 -14.03975 -13.94440 -13.77308 -13.66906 -13.48109 -13.15980 -13.01445 -12.97997 -12.72225 -12.48115 -12.41642 -12.19761 -12.02053 -11.85365 -11.42550 -11.30125 -10.86481 -10.76805 -10.04068 -9.67934 -8.93951 -7.79153 -5.25049 -0.30595 1.00135 1.11738 1.47673 1.49483 1.58134 1.74520 1.89421 2.49241 2.62967 3.04397 3.31253 3.33114 3.58473 3.66300 3.72649 3.81912 3.84662 3.91022 4.11161 4.15351 4.17166 4.30127 4.47198 4.49788 4.54299 4.63659 4.75661 4.78720 4.87611 4.91191 4.94678 5.01587 5.04983 5.27538 5.40113 5.43794 5.54773 5.64002 5.75362 6.15756 6.26810 6.78409 7.07584 7.73104 8.36524 9.22649 Molecular weight = 328.14amu Principal moments of inertia in cm(-1) A = 0.019203 B = 0.002844 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.751309 B = 9842.972353 C =10794.565093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.091 4.091 3 C -0.163 4.163 4 C -0.077 4.077 5 C 0.364 3.636 6 F -0.202 7.202 7 F -0.186 7.186 8 O -0.144 6.144 9 C -0.080 4.080 10 C 0.595 3.405 11 O -0.546 6.546 12 N -0.590 5.590 13 C 0.078 3.922 14 C 0.142 3.858 15 H 0.096 0.904 16 C -0.135 4.135 17 C 0.157 3.843 18 N -0.621 5.621 19 C -0.241 4.241 20 H 0.081 0.919 21 C -0.063 4.063 22 N -0.948 5.948 23 Si 0.982 3.018 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.268 1.268 27 C 0.131 3.869 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.064 0.936 31 H 0.194 0.806 32 H 0.189 0.811 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.082 0.918 39 H -0.010 1.010 40 H 0.249 0.751 41 H 0.039 0.961 42 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.054 26.781 -0.021 26.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.182 4.182 4 C -0.130 4.130 5 C 0.311 3.689 6 F -0.183 7.183 7 F -0.167 7.167 8 O -0.040 6.040 9 C -0.132 4.132 10 C 0.385 3.615 11 O -0.426 6.426 12 N -0.320 5.320 13 C -0.064 4.064 14 C 0.038 3.962 15 H 0.114 0.886 16 C -0.174 4.174 17 C 0.032 3.968 18 N -0.348 5.348 19 C -0.370 4.370 20 H 0.099 0.901 21 C -0.256 4.256 22 N -0.597 5.597 23 Si 0.810 3.190 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.193 1.193 27 C 0.005 3.995 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.083 0.917 31 H 0.211 0.789 32 H 0.206 0.794 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.008 0.992 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -0.179 26.236 -0.007 26.236 hybrid contribution 0.254 -1.150 0.258 1.206 sum 0.075 25.086 0.251 25.087 Atomic orbital electron populations 1.20450 0.86891 1.03907 1.03600 1.20985 0.98696 0.90656 0.99022 1.21787 0.89916 1.01461 1.05019 1.23763 0.98552 0.82322 1.08359 1.20108 0.78024 0.74973 0.95795 1.93051 1.60069 1.81022 1.84208 1.93060 1.94005 1.45300 1.84333 1.84223 1.27966 1.21031 1.70813 1.21772 0.81828 0.94320 1.15309 1.16862 0.85201 0.82525 0.76940 1.90827 1.16786 1.82575 1.52440 1.47751 1.09921 1.05382 1.68964 1.22004 0.79757 1.02287 1.02337 1.21946 0.99403 0.78740 0.96099 0.88602 1.23221 1.01869 0.95971 0.96311 1.21716 0.95911 0.92834 0.86360 1.44687 1.63783 1.10217 1.16113 1.19432 1.26447 0.92450 0.98666 0.90100 1.25635 1.02316 0.99582 0.98064 1.70016 1.51563 1.21815 1.16291 0.85022 0.78038 0.78599 0.77298 1.21556 1.21781 1.19302 1.21580 0.96865 0.86210 0.94851 0.89906 0.88556 0.91679 0.78865 0.79447 0.91392 0.89922 0.89499 0.90072 0.90272 0.90004 0.99210 0.94149 0.94326 0.96283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.72 9.75 71.24 0.69 -1.03 16 2 C -0.09 -1.92 6.20 -19.74 -0.12 -2.04 16 3 C -0.16 -2.49 10.38 22.07 0.23 -2.26 16 4 C -0.08 -1.25 6.93 24.97 0.17 -1.08 16 5 C 0.36 3.81 5.82 71.24 0.41 4.23 16 6 F -0.20 -3.28 17.31 44.97 0.78 -2.50 16 7 F -0.19 -2.23 17.02 44.97 0.77 -1.46 16 8 O -0.14 -3.19 7.53 -4.94 -0.04 -3.22 16 9 C -0.08 -2.07 6.69 24.07 0.16 -1.91 16 10 C 0.60 18.85 7.63 86.44 0.66 19.51 16 11 O -0.55 -19.85 14.21 -4.34 -0.06 -19.91 16 12 N -0.59 -18.63 2.88 -820.68 -2.37 -21.00 16 13 C 0.08 2.04 8.10 127.77 1.03 3.08 16 14 C 0.14 5.29 3.36 46.18 0.16 5.44 16 15 H 0.10 3.81 7.00 -2.38 -0.02 3.79 16 16 C -0.13 -5.12 6.59 31.99 0.21 -4.91 16 17 C 0.16 7.79 5.89 86.86 0.51 8.30 16 18 N -0.62 -32.26 3.39 -691.99 -2.35 -34.61 16 19 C -0.24 -13.52 10.27 84.03 0.86 -12.66 16 20 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 21 C -0.06 -3.56 5.49 84.86 0.47 -3.10 16 22 N -0.95 -55.98 10.09 21.65 0.22 -55.77 16 23 Si 0.98 45.34 29.55 68.60 2.03 47.37 16 24 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 25 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 C 0.13 5.61 6.88 86.73 0.60 6.21 16 28 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.06 1.55 6.60 -2.39 -0.02 1.53 16 31 H 0.19 1.67 8.06 -2.91 -0.02 1.65 16 32 H 0.19 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.07 1.68 8.06 -2.39 -0.02 1.67 16 34 H 0.08 2.27 6.12 -2.39 -0.01 2.25 16 35 H 0.09 2.04 5.96 -2.38 -0.01 2.03 16 36 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.08 2.83 6.14 -2.39 -0.01 2.81 16 38 H 0.08 4.55 5.87 -2.39 -0.01 4.54 16 39 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 40 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 41 H 0.04 1.58 7.05 -2.38 -0.02 1.56 16 42 H 0.02 0.84 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -70.04 349.13 6.08 -63.96 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 1.06 Total: 9.36 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 6.05 Total: 17.78 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -4.50 Total: -111.37 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.10 Total: -23.14 kcal Atomic # 9 Polarization: -5.51 SS G_CDS: 1.54 Total: -3.96 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -70.04 6.08 -63.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033166314.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.388 kcal (2) G-P(sol) polarization free energy of solvation -70.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds