Wall clock time and date at job start Tue Mar 31 2020 14:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40368 * 126.64762 * 2 1 4 4 C 1.35129 * 107.11554 * 180.21872 * 3 2 1 5 5 C 1.50700 * 125.61758 * 179.77452 * 4 3 2 6 6 F 1.39901 * 109.47206 * 300.02890 * 5 4 3 7 7 F 1.39900 * 109.46851 * 60.02763 * 5 4 3 8 8 O 1.33923 * 108.76843 * 359.78318 * 4 3 2 9 9 C 1.34915 * 109.38638 * 359.97438 * 8 4 3 10 10 C 1.46658 * 125.98786 * 179.97438 * 9 8 4 11 11 O 1.21702 * 119.99711 * 173.15476 * 10 9 8 12 12 N 1.34770 * 120.00398 * 353.15706 * 10 9 8 13 13 C 1.46502 * 119.99608 * 3.76918 * 12 10 9 14 14 C 1.46500 * 120.00387 * 183.77602 * 12 10 9 15 15 H 1.09001 * 110.63842 * 1.38067 * 14 12 10 16 16 C 1.55149 * 110.71778 * 238.24234 * 14 12 10 17 17 C 1.54912 * 101.58063 * 277.13194 * 16 14 12 18 18 N 1.47418 * 104.92907 * 322.93854 * 17 16 14 19 19 C 1.36940 * 125.64378 * 204.14995 * 18 17 16 20 20 H 1.08004 * 119.99715 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00496 * 0.02719 * 19 18 17 22 22 N 1.31620 * 119.99479 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00199 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46740 * 60.00338 * 23 21 19 25 25 H 1.48491 * 109.46971 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47306 * 300.00436 * 23 21 19 27 27 C 1.47286 * 108.56029 * 24.15382 * 18 17 16 28 28 H 1.08997 * 109.46834 * 270.15972 * 1 2 3 29 29 H 1.09001 * 109.46876 * 30.15779 * 1 2 3 30 30 H 1.08996 * 109.46756 * 150.15306 * 1 2 3 31 31 H 1.07999 * 126.44215 * 359.97438 * 3 2 1 32 32 H 1.08998 * 109.47334 * 180.02562 * 5 4 3 33 33 H 1.09005 * 109.46781 * 203.87779 * 13 12 10 34 34 H 1.08995 * 109.47440 * 323.87530 * 13 12 10 35 35 H 1.08996 * 109.46883 * 83.88233 * 13 12 10 36 36 H 1.09004 * 111.00445 * 159.06255 * 16 14 12 37 37 H 1.08994 * 111.04083 * 35.22556 * 16 14 12 38 38 H 1.09000 * 110.36476 * 81.83716 * 17 16 14 39 39 H 1.09005 * 110.36905 * 204.04003 * 17 16 14 40 40 H 0.97001 * 119.99665 * 180.02562 * 22 21 19 41 41 H 1.08994 * 109.85964 * 239.50016 * 27 18 17 42 42 H 1.08998 * 109.87245 * 118.35625 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3449 1.1262 0.0000 4 6 3.6184 0.6744 -0.0049 5 6 4.8551 1.5356 -0.0116 6 9 4.8556 2.3421 -1.1547 7 9 4.8662 2.3444 1.1298 8 8 3.6005 -0.6647 -0.0031 9 6 2.3220 -1.0955 0.0035 10 6 1.8843 -2.4953 0.0069 11 8 0.7046 -2.7635 0.1385 12 7 2.7885 -3.4844 -0.1358 13 6 4.2165 -3.1662 -0.2113 14 6 2.3434 -4.8779 -0.2155 15 1 1.2560 -4.9372 -0.1683 16 6 2.9888 -5.7257 0.9122 17 6 4.3700 -6.0620 0.2967 18 7 4.1050 -6.2738 -1.1380 19 6 4.8746 -7.0203 -1.9899 20 1 4.5944 -7.1141 -3.0288 21 6 6.0147 -7.6565 -1.5184 22 7 6.3558 -7.5426 -0.2523 23 14 7.0640 -8.6753 -2.6805 24 1 7.5638 -7.8126 -3.7812 25 1 8.2154 -9.2458 -1.9363 26 1 6.2466 -9.7777 -3.2478 27 6 2.8753 -5.5484 -1.4996 28 1 -0.3633 0.0029 1.0276 29 1 -0.3633 0.8886 -0.5163 30 1 -0.3633 -0.8913 -0.5114 31 1 2.0307 2.1595 -0.0004 32 1 5.7405 0.8999 -0.0150 33 1 4.7406 -3.9686 -0.7306 34 1 4.3523 -2.2317 -0.7556 35 1 4.6192 -3.0616 0.7962 36 1 2.4127 -6.6322 1.0980 37 1 3.1000 -5.1418 1.8259 38 1 5.0603 -5.2300 0.4362 39 1 4.7748 -6.9691 0.7457 40 1 7.1527 -7.9869 0.0771 41 1 2.1339 -6.2469 -1.8875 42 1 3.0998 -4.7891 -2.2487 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033166315.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:29 Heat of formation + Delta-G solvation = -73.361169 kcal Electronic energy + Delta-G solvation = -28759.470921 eV Core-core repulsion = 24378.799919 eV Total energy + Delta-G solvation = -4380.671002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.47669 -47.47978 -43.09268 -39.82883 -37.58414 -34.93387 -34.07716 -32.35925 -31.58552 -29.36648 -28.13841 -28.06807 -27.00764 -26.02352 -24.34294 -22.28601 -21.87297 -20.30903 -20.12683 -19.15180 -17.86336 -17.82810 -17.60274 -17.37746 -16.98454 -16.61782 -16.20123 -14.93923 -14.72820 -14.62597 -14.33241 -14.16927 -13.84157 -13.83210 -13.68056 -13.44691 -13.35785 -13.05104 -12.96616 -12.66391 -12.33177 -12.24931 -11.99464 -11.75048 -11.64445 -11.54333 -11.14189 -10.94364 -10.88999 -10.46754 -10.20455 -10.03127 -9.94032 -9.81255 -9.61375 -9.03119 -8.72511 -8.37973 -6.93304 -5.72858 -3.15554 0.67780 1.88678 1.96271 2.98514 3.08852 3.36053 3.40992 3.41734 3.52110 3.74656 4.17155 4.42536 4.44128 4.49756 4.54130 5.00541 5.17544 5.24277 5.34174 5.37938 5.41607 5.55158 5.57482 5.61563 5.69743 5.77697 5.83746 5.87018 6.14633 6.17637 6.23211 6.27625 6.47626 6.50106 6.52242 6.62004 6.90120 7.37779 7.46966 7.54683 7.77316 8.06672 8.27380 9.13648 9.73807 10.37898 11.30447 Molecular weight = 328.14amu Principal moments of inertia in cm(-1) A = 0.014824 B = 0.003328 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.358994 B = 8411.706792 C = 9644.280379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.101 4.101 3 C -0.157 4.157 4 C -0.089 4.089 5 C 0.360 3.640 6 F -0.184 7.184 7 F -0.184 7.184 8 O -0.135 6.135 9 C -0.039 4.039 10 C 0.594 3.406 11 O -0.523 6.523 12 N -0.579 5.579 13 C 0.063 3.937 14 C 0.125 3.875 15 H 0.104 0.896 16 C -0.154 4.154 17 C 0.143 3.857 18 N -0.603 5.603 19 C -0.225 4.225 20 H 0.077 0.923 21 C -0.008 4.008 22 N -0.922 5.922 23 Si 0.915 3.085 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.126 3.874 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.160 0.840 32 H 0.136 0.864 33 H 0.111 0.889 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.021 0.979 39 H 0.108 0.892 40 H 0.253 0.747 41 H 0.037 0.963 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.832 17.521 2.497 18.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 C -0.177 4.177 4 C -0.141 4.141 5 C 0.306 3.694 6 F -0.165 7.165 7 F -0.165 7.165 8 O -0.031 6.031 9 C -0.092 4.092 10 C 0.381 3.619 11 O -0.402 6.402 12 N -0.309 5.309 13 C -0.079 4.079 14 C 0.022 3.978 15 H 0.122 0.878 16 C -0.194 4.194 17 C 0.019 3.981 18 N -0.330 5.330 19 C -0.353 4.353 20 H 0.095 0.905 21 C -0.204 4.204 22 N -0.570 5.570 23 Si 0.745 3.255 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.000 4.000 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.178 0.822 32 H 0.153 0.847 33 H 0.130 0.870 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.039 0.961 39 H 0.125 0.875 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -5.963 17.046 2.557 18.239 hybrid contribution 0.647 -0.115 -0.586 0.880 sum -5.316 16.931 1.971 17.855 Atomic orbital electron populations 1.20395 0.87604 1.03618 1.03097 1.20626 0.97988 0.90394 1.01340 1.21541 0.91055 1.00598 1.04488 1.22875 0.97058 0.83157 1.11031 1.19110 0.95400 0.83111 0.71808 1.93073 1.97376 1.75429 1.50620 1.93070 1.97353 1.75315 1.50785 1.84319 1.28786 1.19611 1.70359 1.22250 0.80642 0.95282 1.11037 1.16640 0.85665 0.81578 0.77993 1.90830 1.16010 1.81820 1.51547 1.47778 1.07386 1.06523 1.69199 1.22360 0.80191 1.02894 1.02458 1.22277 0.99657 0.78344 0.97528 0.87843 1.23370 1.00831 0.98614 0.96552 1.22134 0.90116 1.02010 0.83858 1.44602 1.25031 1.56919 1.06434 1.19023 1.02977 1.22133 0.91199 0.90504 1.24769 0.98350 1.00745 0.96493 1.69779 1.26740 1.47747 1.12718 0.86151 0.79727 0.80040 0.79553 1.21208 1.21558 1.21142 1.21684 0.90375 0.94271 0.93710 0.90569 0.91396 0.89432 0.82196 0.84713 0.87025 0.91247 0.92416 0.90739 0.91942 0.96118 0.87482 0.93620 0.94530 0.95380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.98 9.75 36.01 0.35 -0.63 16 2 C -0.10 -1.26 6.20 -104.43 -0.65 -1.91 16 3 C -0.16 -1.72 10.73 -39.89 -0.43 -2.15 16 4 C -0.09 -0.98 6.75 -35.41 -0.24 -1.22 16 5 C 0.36 3.09 5.76 36.01 0.21 3.30 16 6 F -0.18 -1.77 17.32 2.25 0.04 -1.73 16 7 F -0.18 -1.75 17.32 2.25 0.04 -1.71 16 8 O -0.13 -1.75 7.28 5.01 0.04 -1.71 16 9 C -0.04 -0.56 6.77 -36.80 -0.25 -0.81 16 10 C 0.59 9.72 7.64 -12.87 -0.10 9.62 16 11 O -0.52 -9.31 14.22 5.19 0.07 -9.24 16 12 N -0.58 -9.68 2.82 -173.39 -0.49 -10.17 16 13 C 0.06 1.00 7.78 59.85 0.47 1.47 16 14 C 0.12 2.23 3.58 -66.10 -0.24 1.99 16 15 H 0.10 1.81 7.00 -51.93 -0.36 1.44 16 16 C -0.15 -2.86 6.58 -24.59 -0.16 -3.02 16 17 C 0.14 3.24 5.00 -2.53 -0.01 3.22 16 18 N -0.60 -14.50 2.93 -169.86 -0.50 -14.99 16 19 C -0.23 -5.98 10.28 -15.06 -0.15 -6.14 16 20 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 21 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 22 N -0.92 -25.56 10.09 55.49 0.56 -25.00 16 23 Si 0.91 21.32 29.55 -169.99 -5.02 16.30 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 27 C 0.13 2.56 6.20 -2.92 -0.02 2.54 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 1.08 6.62 -51.93 -0.34 0.74 16 31 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.14 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.11 2.12 4.92 -51.93 -0.26 1.86 16 34 H 0.07 1.00 5.39 -51.93 -0.28 0.72 16 35 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.02 0.48 5.68 -51.93 -0.30 0.19 16 39 H 0.11 2.78 5.87 -51.93 -0.30 2.48 16 40 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.03 0.58 7.98 -51.93 -0.41 0.16 16 LS Contribution 345.94 15.07 5.21 5.21 Total: -1.00 -29.50 345.94 -6.55 -36.05 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -5.18 Total: 1.04 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -1.32 Total: 5.96 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -0.43 Total: -50.16 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.11 Total: -10.95 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.08 Total: -3.45 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.50 -6.55 -36.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033166315.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.311 kcal (2) G-P(sol) polarization free energy of solvation -29.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds