Wall clock time and date at job start Tue Mar 31 2020 14:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40368 * 126.64762 * 2 1 4 4 C 1.35129 * 107.11554 * 180.21872 * 3 2 1 5 5 C 1.50700 * 125.61758 * 179.77452 * 4 3 2 6 6 F 1.39901 * 109.47206 * 300.02890 * 5 4 3 7 7 F 1.39900 * 109.46851 * 60.02763 * 5 4 3 8 8 O 1.33923 * 108.76843 * 359.78318 * 4 3 2 9 9 C 1.34915 * 109.38638 * 359.97438 * 8 4 3 10 10 C 1.46658 * 125.98786 * 179.97438 * 9 8 4 11 11 O 1.21702 * 119.99711 * 173.15476 * 10 9 8 12 12 N 1.34770 * 120.00398 * 353.15706 * 10 9 8 13 13 C 1.46502 * 119.99608 * 3.76918 * 12 10 9 14 14 C 1.46500 * 120.00387 * 183.77602 * 12 10 9 15 15 H 1.09001 * 110.63842 * 1.38067 * 14 12 10 16 16 C 1.55149 * 110.71778 * 238.24234 * 14 12 10 17 17 C 1.54912 * 101.58063 * 277.13194 * 16 14 12 18 18 N 1.47418 * 104.92907 * 322.93854 * 17 16 14 19 19 C 1.36940 * 125.64378 * 204.14995 * 18 17 16 20 20 H 1.08004 * 119.99715 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00496 * 0.02719 * 19 18 17 22 22 N 1.31620 * 119.99479 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00199 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46740 * 60.00338 * 23 21 19 25 25 H 1.48491 * 109.46971 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47306 * 300.00436 * 23 21 19 27 27 C 1.47286 * 108.56029 * 24.15382 * 18 17 16 28 28 H 1.08997 * 109.46834 * 270.15972 * 1 2 3 29 29 H 1.09001 * 109.46876 * 30.15779 * 1 2 3 30 30 H 1.08996 * 109.46756 * 150.15306 * 1 2 3 31 31 H 1.07999 * 126.44215 * 359.97438 * 3 2 1 32 32 H 1.08998 * 109.47334 * 180.02562 * 5 4 3 33 33 H 1.09005 * 109.46781 * 203.87779 * 13 12 10 34 34 H 1.08995 * 109.47440 * 323.87530 * 13 12 10 35 35 H 1.08996 * 109.46883 * 83.88233 * 13 12 10 36 36 H 1.09004 * 111.00445 * 159.06255 * 16 14 12 37 37 H 1.08994 * 111.04083 * 35.22556 * 16 14 12 38 38 H 1.09000 * 110.36476 * 81.83716 * 17 16 14 39 39 H 1.09005 * 110.36905 * 204.04003 * 17 16 14 40 40 H 0.97001 * 119.99665 * 180.02562 * 22 21 19 41 41 H 1.08994 * 109.85964 * 239.50016 * 27 18 17 42 42 H 1.08998 * 109.87245 * 118.35625 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3449 1.1262 0.0000 4 6 3.6184 0.6744 -0.0049 5 6 4.8551 1.5356 -0.0116 6 9 4.8556 2.3421 -1.1547 7 9 4.8662 2.3444 1.1298 8 8 3.6005 -0.6647 -0.0031 9 6 2.3220 -1.0955 0.0035 10 6 1.8843 -2.4953 0.0069 11 8 0.7046 -2.7635 0.1385 12 7 2.7885 -3.4844 -0.1358 13 6 4.2165 -3.1662 -0.2113 14 6 2.3434 -4.8779 -0.2155 15 1 1.2560 -4.9372 -0.1683 16 6 2.9888 -5.7257 0.9122 17 6 4.3700 -6.0620 0.2967 18 7 4.1050 -6.2738 -1.1380 19 6 4.8746 -7.0203 -1.9899 20 1 4.5944 -7.1141 -3.0288 21 6 6.0147 -7.6565 -1.5184 22 7 6.3558 -7.5426 -0.2523 23 14 7.0640 -8.6753 -2.6805 24 1 7.5638 -7.8126 -3.7812 25 1 8.2154 -9.2458 -1.9363 26 1 6.2466 -9.7777 -3.2478 27 6 2.8753 -5.5484 -1.4996 28 1 -0.3633 0.0029 1.0276 29 1 -0.3633 0.8886 -0.5163 30 1 -0.3633 -0.8913 -0.5114 31 1 2.0307 2.1595 -0.0004 32 1 5.7405 0.8999 -0.0150 33 1 4.7406 -3.9686 -0.7306 34 1 4.3523 -2.2317 -0.7556 35 1 4.6192 -3.0616 0.7962 36 1 2.4127 -6.6322 1.0980 37 1 3.1000 -5.1418 1.8259 38 1 5.0603 -5.2300 0.4362 39 1 4.7748 -6.9691 0.7457 40 1 7.1527 -7.9869 0.0771 41 1 2.1339 -6.2469 -1.8875 42 1 3.0998 -4.7891 -2.2487 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033166315.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:28 Heat of formation + Delta-G solvation = -89.161733 kcal Electronic energy + Delta-G solvation = -28760.156085 eV Core-core repulsion = 24378.799919 eV Total energy + Delta-G solvation = -4381.356166 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.139 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.18765 -48.19409 -44.04372 -41.18350 -39.10047 -36.29583 -35.21238 -34.05841 -32.62152 -31.11035 -29.69155 -28.98560 -28.03279 -27.45924 -26.07322 -23.46011 -22.77511 -22.05192 -21.30862 -20.44224 -18.98450 -18.78934 -18.62781 -18.40616 -18.29384 -17.69628 -17.49382 -16.71144 -16.13420 -15.93637 -15.61202 -15.30207 -15.05820 -14.68573 -14.54795 -14.48143 -14.27757 -14.21849 -14.10140 -13.83572 -13.81493 -13.64459 -13.34651 -13.15610 -13.12673 -12.94747 -12.74819 -12.45765 -12.29665 -12.06805 -11.98568 -11.81096 -11.43886 -11.18073 -10.91561 -10.68769 -10.08455 -9.68806 -8.87983 -7.75426 -5.19818 -0.33240 0.97009 1.04232 1.49672 1.51301 1.57758 1.76733 1.90546 2.50815 2.70143 2.99757 3.35096 3.36502 3.55905 3.61939 3.70448 3.80760 3.82826 3.96594 4.13750 4.16674 4.23329 4.34622 4.44502 4.55595 4.63413 4.67196 4.75407 4.86322 4.88410 4.90035 4.98092 5.00930 5.08652 5.26769 5.39353 5.49650 5.61159 5.64347 5.82636 6.18220 6.32246 6.79760 7.12321 7.77634 8.41509 9.25376 Molecular weight = 328.14amu Principal moments of inertia in cm(-1) A = 0.014824 B = 0.003328 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.358994 B = 8411.706792 C = 9644.280379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.092 4.092 3 C -0.162 4.162 4 C -0.083 4.083 5 C 0.363 3.637 6 F -0.188 7.188 7 F -0.188 7.188 8 O -0.142 6.142 9 C -0.074 4.074 10 C 0.596 3.404 11 O -0.542 6.542 12 N -0.584 5.584 13 C 0.075 3.925 14 C 0.138 3.862 15 H 0.113 0.887 16 C -0.140 4.140 17 C 0.150 3.850 18 N -0.619 5.619 19 C -0.239 4.239 20 H 0.078 0.922 21 C -0.058 4.058 22 N -0.944 5.944 23 Si 0.976 3.024 24 H -0.280 1.280 25 H -0.294 1.294 26 H -0.281 1.281 27 C 0.128 3.872 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.186 0.814 32 H 0.168 0.832 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.013 0.987 39 H 0.072 0.928 40 H 0.247 0.753 41 H 0.040 0.960 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.178 19.383 2.312 20.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.181 4.181 4 C -0.135 4.135 5 C 0.309 3.691 6 F -0.169 7.169 7 F -0.169 7.169 8 O -0.039 6.039 9 C -0.126 4.126 10 C 0.386 3.614 11 O -0.423 6.423 12 N -0.314 5.314 13 C -0.067 4.067 14 C 0.034 3.966 15 H 0.131 0.869 16 C -0.179 4.179 17 C 0.025 3.975 18 N -0.346 5.346 19 C -0.368 4.368 20 H 0.096 0.904 21 C -0.251 4.251 22 N -0.593 5.593 23 Si 0.805 3.195 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.207 1.207 27 C 0.002 3.998 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.203 0.797 32 H 0.185 0.815 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.031 0.969 39 H 0.090 0.910 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.331 18.929 2.364 20.099 hybrid contribution 0.718 -0.570 -0.541 1.065 sum -5.613 18.359 1.823 19.284 Atomic orbital electron populations 1.20451 0.86580 1.04002 1.03660 1.20975 0.98846 0.90399 0.99280 1.21870 0.90686 1.01365 1.04199 1.23454 0.98366 0.82584 1.09132 1.19397 0.95418 0.82912 0.71331 1.93067 1.97340 1.75592 1.50949 1.93066 1.97311 1.75453 1.51058 1.84247 1.28212 1.20630 1.70767 1.21901 0.81623 0.94586 1.14483 1.16805 0.85240 0.82274 0.77126 1.90810 1.16654 1.82456 1.52375 1.47762 1.07754 1.06144 1.69786 1.22202 0.79509 1.02342 1.02668 1.22044 0.99836 0.78995 0.95709 0.86940 1.23216 0.98344 0.99246 0.97097 1.21903 0.92126 0.99992 0.83442 1.44789 1.25894 1.57033 1.06868 1.19343 1.03470 1.22237 0.91762 0.90427 1.25502 0.99590 1.02069 0.97903 1.70017 1.26775 1.48490 1.14031 0.85193 0.77937 0.78611 0.77793 1.20569 1.21997 1.20675 1.21747 0.89089 0.94053 0.94953 0.89822 0.88751 0.91252 0.79690 0.81491 0.90187 0.89632 0.91698 0.90241 0.90385 0.96917 0.90994 0.94299 0.94214 0.95625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.77 9.75 71.24 0.69 -1.08 16 2 C -0.09 -2.13 6.20 -19.74 -0.12 -2.25 16 3 C -0.16 -3.09 10.73 22.07 0.24 -2.85 16 4 C -0.08 -1.62 6.75 24.97 0.17 -1.46 16 5 C 0.36 5.20 5.76 71.24 0.41 5.61 16 6 F -0.19 -3.13 17.32 44.97 0.78 -2.36 16 7 F -0.19 -3.07 17.32 44.97 0.78 -2.30 16 8 O -0.14 -3.43 7.28 -4.98 -0.04 -3.46 16 9 C -0.07 -2.02 6.77 24.07 0.16 -1.85 16 10 C 0.60 19.04 7.64 86.44 0.66 19.70 16 11 O -0.54 -18.95 14.22 -4.35 -0.06 -19.01 16 12 N -0.58 -19.20 2.82 -820.70 -2.32 -21.51 16 13 C 0.07 2.35 7.78 127.77 0.99 3.35 16 14 C 0.14 4.85 3.58 46.18 0.17 5.02 16 15 H 0.11 3.82 7.00 -2.39 -0.02 3.80 16 16 C -0.14 -5.12 6.58 31.98 0.21 -4.91 16 17 C 0.15 6.91 5.00 86.86 0.43 7.34 16 18 N -0.62 -30.23 2.93 -691.33 -2.02 -32.25 16 19 C -0.24 -12.88 10.28 84.03 0.86 -12.02 16 20 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 21 C -0.06 -3.13 5.49 84.86 0.47 -2.66 16 22 N -0.94 -53.58 10.09 21.65 0.22 -53.36 16 23 Si 0.98 44.19 29.55 68.60 2.03 46.22 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 26 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 27 C 0.13 5.18 6.20 86.68 0.54 5.71 16 28 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.64 6.62 -2.39 -0.02 1.63 16 31 H 0.19 2.49 8.06 -2.91 -0.02 2.47 16 32 H 0.17 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 3.08 4.92 -2.38 -0.01 3.07 16 34 H 0.09 2.38 5.39 -2.39 -0.01 2.37 16 35 H 0.06 1.92 8.10 -2.39 -0.02 1.90 16 36 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 37 H 0.08 2.61 8.14 -2.39 -0.02 2.60 16 38 H 0.01 0.61 5.68 -2.39 -0.01 0.60 16 39 H 0.07 3.86 5.87 -2.38 -0.01 3.85 16 40 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 41 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.03 1.06 7.98 -2.39 -0.02 1.04 16 Total: -1.00 -63.80 345.94 6.31 -57.48 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 1.06 Total: 12.91 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 5.88 Total: 17.64 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -4.12 Total: -107.13 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.10 Total: -22.47 kcal Atomic # 9 Polarization: -6.21 SS G_CDS: 1.56 Total: -4.65 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -63.80 6.31 -57.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033166315.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.678 kcal (2) G-P(sol) polarization free energy of solvation -63.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds