Wall clock time and date at job start Tue Mar 31 2020 15:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.49840 * 2 1 4 4 C 1.53192 * 109.49845 * 239.93315 * 2 1 3 5 5 N 1.46925 * 108.77384 * 185.41580 * 4 2 1 6 6 C 1.34782 * 120.62801 * 233.63266 * 5 4 2 7 7 O 1.21696 * 120.00206 * 353.64357 * 6 5 4 8 8 C 1.46661 * 119.99860 * 173.64893 * 6 5 4 9 9 C 1.36543 * 125.98491 * 173.04074 * 8 6 5 10 10 C 1.40370 * 106.70580 * 179.84928 * 9 8 6 11 11 C 1.35129 * 107.11375 * 0.40567 * 10 9 8 12 12 C 1.50695 * 125.61889 * 179.71458 * 11 10 9 13 13 F 1.39906 * 109.47177 * 210.01941 * 12 11 10 14 14 F 1.39908 * 109.46884 * 330.01213 * 12 11 10 15 15 O 1.33936 * 108.76633 * 359.74747 * 11 10 9 16 16 C 1.46916 * 118.74084 * 53.61143 * 5 4 2 17 17 C 1.53189 * 108.77943 * 306.38874 * 16 5 4 18 18 C 1.53038 * 109.49672 * 120.09914 * 2 1 3 19 19 H 1.09010 * 109.46030 * 301.33599 * 18 2 1 20 20 N 1.46499 * 109.46272 * 61.29217 * 18 2 1 21 21 C 1.36940 * 120.00280 * 205.07088 * 20 18 2 22 22 H 1.08001 * 119.99831 * 359.97438 * 21 20 18 23 23 C 1.38809 * 119.99900 * 180.02562 * 21 20 18 24 24 N 1.31619 * 120.00379 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00025 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47055 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47274 * 119.99564 * 25 23 21 28 28 H 1.48492 * 109.47063 * 239.99842 * 25 23 21 29 29 H 1.08999 * 109.47233 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47451 * 300.06883 * 1 2 3 31 31 H 1.09001 * 109.47014 * 60.06218 * 1 2 3 32 32 H 1.09007 * 109.58194 * 65.62949 * 4 2 1 33 33 H 1.08998 * 109.58769 * 305.20517 * 4 2 1 34 34 H 1.07997 * 126.64716 * 359.94780 * 9 8 6 35 35 H 1.07995 * 126.44222 * 180.15342 * 10 9 8 36 36 H 1.09001 * 109.47705 * 90.01385 * 12 11 10 37 37 H 1.09005 * 109.59110 * 186.60349 * 16 5 4 38 38 H 1.08999 * 109.70716 * 66.24650 * 16 5 4 39 39 H 1.08990 * 109.50745 * 174.58361 * 17 16 5 40 40 H 1.08997 * 109.49843 * 294.68929 * 17 16 5 41 41 H 0.96998 * 119.99590 * 25.07311 * 20 18 2 42 42 H 0.96993 * 120.00552 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2498 5 7 3.5046 -0.8288 -1.1697 6 6 4.2812 -0.3850 -2.1779 7 8 3.7720 0.0016 -3.2134 8 6 5.7399 -0.3681 -2.0271 9 6 6.6444 -0.0733 -3.0066 10 6 7.9174 -0.1743 -2.4240 11 6 7.7368 -0.5308 -1.1332 12 6 8.8327 -0.7610 -0.1247 13 9 8.4139 -1.7145 0.8096 14 9 9.9797 -1.2224 -0.7796 15 8 6.4234 -0.6466 -0.8979 16 6 4.1052 -1.4267 0.0304 17 6 3.5708 -0.6955 1.2659 18 6 2.0408 -0.7235 1.2481 19 1 1.6581 -0.2251 2.1389 20 7 1.5782 -2.1134 1.2302 21 6 1.4466 -2.8065 2.4039 22 1 1.6843 -2.3285 3.3428 23 6 1.0089 -4.1236 2.3869 24 7 0.7198 -4.7063 1.2426 25 14 0.8301 -5.0693 3.9879 26 1 1.2146 -4.1948 5.1249 27 1 -0.5809 -5.5021 4.1522 28 1 1.7137 -6.2623 3.9594 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5149 0.8893 31 1 -0.3633 0.5129 -0.8906 32 1 1.7638 -0.1573 -2.1389 33 1 1.6052 -1.7212 -1.2985 34 1 6.4231 0.1887 -4.0307 35 1 8.8635 -0.0036 -2.9161 36 1 9.0581 0.1746 0.3870 37 1 5.1896 -1.3247 -0.0140 38 1 3.8396 -2.4824 0.0874 39 1 3.9333 -1.1903 2.1668 40 1 3.9158 0.3384 1.2543 41 1 1.3652 -2.5428 0.3869 42 1 0.4136 -5.6266 1.2307 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036282199.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:31 Heat of formation + Delta-G solvation = -92.791555 kcal Electronic energy + Delta-G solvation = -29040.683120 eV Core-core repulsion = 24659.169554 eV Total energy + Delta-G solvation = -4381.513567 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.139 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.42867 -47.44870 -43.06881 -39.91668 -37.80866 -34.54938 -33.48404 -32.86399 -31.51083 -31.30772 -29.22226 -27.48873 -25.94789 -24.92878 -23.54624 -22.37566 -21.91638 -21.64608 -20.34190 -18.71432 -18.13035 -17.97348 -17.44138 -17.37244 -17.10405 -16.38321 -15.96234 -15.01696 -14.78735 -14.50318 -14.36291 -14.23481 -13.95885 -13.88794 -13.76074 -13.49056 -13.32989 -13.24989 -13.09792 -12.88320 -12.56964 -12.13237 -11.84098 -11.59124 -11.38774 -11.17720 -10.93045 -10.82385 -10.54930 -10.51138 -10.34792 -10.18149 -10.04597 -9.88617 -9.58694 -9.07723 -8.94871 -8.34839 -7.00272 -5.81038 -3.09769 0.69375 1.91865 1.99323 3.01334 3.11527 3.40605 3.43534 3.46817 3.48798 3.71530 4.25656 4.35975 4.52368 4.55974 4.60716 5.07095 5.21466 5.26316 5.29831 5.34716 5.46681 5.53153 5.61148 5.73863 5.84584 5.85414 5.97790 5.98674 6.06097 6.21254 6.31919 6.34282 6.45693 6.49067 6.59247 6.67519 6.72200 6.88603 6.94113 7.48541 7.67589 8.05805 8.37246 9.49114 10.04907 10.39905 11.41430 Molecular weight = 328.14amu Principal moments of inertia in cm(-1) A = 0.012115 B = 0.004002 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.602668 B = 6994.643584 C = 8629.531635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 H 0.067 0.933 4 C 0.119 3.881 5 N -0.586 5.586 6 C 0.593 3.407 7 O -0.529 6.529 8 C -0.037 4.037 9 C -0.132 4.132 10 C -0.166 4.166 11 C -0.092 4.092 12 C 0.361 3.639 13 F -0.186 7.186 14 F -0.185 7.185 15 O -0.129 6.129 16 C 0.099 3.901 17 C -0.147 4.147 18 C 0.177 3.823 19 H 0.053 0.947 20 N -0.719 5.719 21 C -0.238 4.238 22 H 0.071 0.929 23 C -0.011 4.011 24 N -0.932 5.932 25 Si 0.904 3.096 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.167 0.833 35 H 0.163 0.837 36 H 0.140 0.860 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.048 0.952 41 H 0.384 0.616 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.382 12.142 -5.252 19.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 H 0.085 0.915 4 C -0.003 4.003 5 N -0.316 5.316 6 C 0.380 3.620 7 O -0.408 6.408 8 C -0.090 4.090 9 C -0.152 4.152 10 C -0.185 4.185 11 C -0.144 4.144 12 C 0.308 3.692 13 F -0.167 7.167 14 F -0.166 7.166 15 O -0.025 6.025 16 C -0.022 4.022 17 C -0.188 4.188 18 C 0.067 3.933 19 H 0.071 0.929 20 N -0.361 5.361 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.207 4.207 24 N -0.580 5.580 25 Si 0.735 3.265 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.184 0.816 35 H 0.181 0.819 36 H 0.157 0.843 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.219 0.781 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.937 12.135 -5.298 19.224 hybrid contribution 0.083 -0.955 0.556 1.108 sum 14.019 11.180 -4.742 18.548 Atomic orbital electron populations 1.21664 0.93946 1.03320 1.00547 1.21724 0.96700 0.98849 0.95595 0.91504 1.21785 0.77429 1.02133 0.98912 1.48094 1.07555 1.57919 1.18029 1.16695 0.82486 0.78783 0.84054 1.90855 1.72270 1.50111 1.27571 1.22526 0.93296 1.08079 0.85066 1.21957 0.90612 1.01923 1.00745 1.21576 0.99732 1.04538 0.92656 1.23311 0.84661 1.09030 0.97374 1.19578 0.77985 0.90523 0.81149 1.93099 1.90235 1.67523 1.65831 1.93060 1.50150 1.90862 1.82500 1.84378 1.15790 1.67347 1.34962 1.22300 0.97495 0.99084 0.83360 1.22513 1.00336 0.98601 0.97350 1.20241 0.90760 0.87435 0.94865 0.92916 1.42482 1.78970 1.07682 1.06978 1.19260 1.37196 0.93890 0.86557 0.91154 1.24701 1.02213 0.97161 0.96608 1.69652 1.51711 1.13029 1.23633 0.86169 0.77276 0.80003 0.83030 1.20616 1.21966 1.21956 0.90936 0.92668 0.93686 0.89493 0.90066 0.81554 0.81918 0.84259 0.88930 0.89268 0.90505 0.93304 0.78129 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.05 37.16 0.34 -1.79 16 2 C -0.11 -1.74 2.67 -90.50 -0.24 -1.98 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 4 C 0.12 1.98 5.40 -3.71 -0.02 1.96 16 5 N -0.59 -9.74 2.97 -174.32 -0.52 -10.25 16 6 C 0.59 9.79 7.65 -12.86 -0.10 9.69 16 7 O -0.53 -9.71 16.32 5.19 0.08 -9.62 16 8 C -0.04 -0.53 6.83 -36.80 -0.25 -0.78 16 9 C -0.13 -1.55 10.63 -39.39 -0.42 -1.97 16 10 C -0.17 -1.62 10.42 -39.89 -0.42 -2.04 16 11 C -0.09 -0.98 6.93 -35.42 -0.25 -1.23 16 12 C 0.36 3.02 5.82 36.00 0.21 3.23 16 13 F -0.19 -2.12 17.31 2.25 0.04 -2.08 16 14 F -0.18 -1.66 17.02 2.25 0.04 -1.62 16 15 O -0.13 -1.72 7.11 5.00 0.04 -1.68 16 16 C 0.10 1.66 6.07 -3.72 -0.02 1.64 16 17 C -0.15 -2.46 5.78 -26.61 -0.15 -2.61 16 18 C 0.18 3.26 2.53 -67.89 -0.17 3.09 16 19 H 0.05 1.00 8.08 -51.92 -0.42 0.58 16 20 N -0.72 -16.37 3.64 -53.38 -0.19 -16.56 16 21 C -0.24 -6.17 9.93 -15.06 -0.15 -6.32 16 22 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 23 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 24 N -0.93 -27.01 13.06 55.49 0.72 -26.29 16 25 Si 0.90 21.77 29.55 -169.99 -5.02 16.74 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H 0.07 1.32 7.53 -51.93 -0.39 0.92 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.09 1.41 7.05 -51.93 -0.37 1.04 16 33 H 0.08 1.50 6.64 -51.93 -0.34 1.15 16 34 H 0.17 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 36 H 0.14 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 1.46 3.79 -55.04 -0.21 1.25 16 38 H 0.09 1.76 7.74 -51.93 -0.40 1.36 16 39 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.38 9.37 5.93 -40.82 -0.24 9.13 16 42 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 351.38 15.07 5.30 5.30 Total: -1.00 -30.40 351.38 -6.56 -36.96 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -5.30 Total: 8.60 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -1.74 Total: 0.51 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 0.01 Total: -53.10 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.12 Total: -11.30 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.08 Total: -3.70 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.40 -6.56 -36.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036282199.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.834 kcal (2) G-P(sol) polarization free energy of solvation -30.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds