Wall clock time and date at job start Tue Mar 31 2020 14:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40360 * 126.64653 * 2 1 4 4 C 1.35132 * 107.11785 * 180.02562 * 3 2 1 5 5 C 1.50697 * 125.61754 * 179.97438 * 4 3 2 6 6 F 1.39898 * 109.46863 * 209.99739 * 5 4 3 7 7 F 1.39901 * 109.47289 * 329.99561 * 5 4 3 8 8 O 1.33933 * 108.76246 * 359.75205 * 4 3 2 9 9 C 1.34919 * 109.38510 * 0.40678 * 8 4 3 10 10 C 1.46653 * 125.98393 * 179.85584 * 9 8 4 11 11 O 1.21697 * 119.99832 * 172.80684 * 10 9 8 12 12 N 1.34781 * 120.00469 * 352.82048 * 10 9 8 13 13 C 1.46498 * 119.99915 * 4.23525 * 12 10 9 14 14 C 1.46496 * 120.00056 * 184.24784 * 12 10 9 15 15 C 1.53001 * 109.46848 * 275.19853 * 14 12 10 16 16 H 1.08996 * 112.96800 * 67.99481 * 15 14 12 17 17 C 1.53944 * 113.76690 * 296.30971 * 15 14 12 18 18 C 1.53943 * 86.29125 * 222.09593 * 17 15 14 19 19 N 1.47588 * 113.76679 * 199.66976 * 15 14 12 20 20 C 1.36927 * 134.49445 * 318.93214 * 19 15 14 21 21 H 1.08007 * 120.00211 * 5.32417 * 20 19 15 22 22 C 1.38807 * 120.00110 * 185.33298 * 20 19 15 23 23 N 1.31622 * 120.00212 * 359.97438 * 22 20 19 24 24 Si 1.86810 * 120.00261 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47200 * 59.99545 * 24 22 20 26 26 H 1.48500 * 109.47397 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47058 * 299.99780 * 24 22 20 28 28 H 1.08998 * 109.47697 * 269.97855 * 1 2 3 29 29 H 1.09003 * 109.47281 * 29.97590 * 1 2 3 30 30 H 1.09006 * 109.47056 * 149.97549 * 1 2 3 31 31 H 1.08005 * 126.44547 * 0.02562 * 3 2 1 32 32 H 1.08995 * 109.47454 * 89.99906 * 5 4 3 33 33 H 1.09000 * 109.46709 * 84.22549 * 13 12 10 34 34 H 1.09000 * 109.47260 * 324.23264 * 13 12 10 35 35 H 1.08991 * 109.47266 * 204.22946 * 13 12 10 36 36 H 1.09001 * 109.47299 * 35.19268 * 14 12 10 37 37 H 1.08995 * 109.47423 * 155.19952 * 14 12 10 38 38 H 1.09002 * 113.74745 * 336.43966 * 17 15 14 39 39 H 1.09002 * 113.73953 * 107.63907 * 17 15 14 40 40 H 1.08998 * 113.77358 * 137.91343 * 18 17 15 41 41 H 1.09009 * 113.76599 * 269.19616 * 18 17 15 42 42 H 0.97003 * 120.00390 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6744 -0.0006 5 6 4.8550 1.5357 -0.0013 6 9 5.8901 0.8646 -0.6612 7 9 4.5846 2.7394 -0.6610 8 8 3.6005 -0.6648 0.0046 9 6 2.3219 -1.0955 -0.0005 10 6 1.8842 -2.4952 -0.0004 11 8 0.7041 -2.7637 0.1267 12 7 2.7890 -3.4843 -0.1407 13 6 4.2179 -3.1669 -0.2001 14 6 2.3434 -4.8768 -0.2340 15 6 2.1507 -5.4459 1.1731 16 1 1.3156 -4.9905 1.7054 17 6 3.4488 -5.5147 1.9977 18 6 2.9626 -6.8997 2.4617 19 7 2.1550 -6.9209 1.2239 20 6 1.6248 -7.9097 0.4390 21 1 1.1302 -7.6571 -0.4873 22 6 1.7228 -9.2368 0.8339 23 7 2.3258 -9.5448 1.9626 24 14 0.9987 -10.5858 -0.2365 25 1 1.6477 -10.5600 -1.5719 26 1 1.2348 -11.9052 0.4027 27 1 -0.4615 -10.3646 -0.3914 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 2.0307 2.1595 0.0004 32 1 5.1537 1.7435 1.0261 33 1 4.6121 -3.0754 0.8120 34 1 4.3593 -2.2258 -0.7315 35 1 4.7455 -3.9633 -0.7249 36 1 1.3988 -4.9205 -0.7761 37 1 3.0938 -5.4637 -0.7636 38 1 4.3534 -5.5479 1.3905 39 1 3.5006 -4.7754 2.7970 40 1 3.7481 -7.6549 2.4882 41 1 2.3671 -6.8732 3.3743 42 1 2.3946 -10.4723 2.2384 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085648613.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:09 Heat of formation + Delta-G solvation = -52.695765 kcal Electronic energy + Delta-G solvation = -28327.909759 eV Core-core repulsion = 23948.134877 eV Total energy + Delta-G solvation = -4379.774883 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.139 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.57020 -47.59396 -43.14633 -39.68486 -37.79261 -35.59723 -34.25360 -32.20857 -31.91973 -29.01257 -28.05508 -27.82870 -27.12430 -25.80926 -23.34566 -22.88591 -21.99658 -21.10470 -19.66000 -19.03382 -18.25742 -17.91358 -17.54930 -17.33979 -16.77487 -16.51554 -15.97434 -15.25425 -14.96329 -14.57339 -14.37208 -14.12482 -14.00086 -13.85653 -13.61924 -13.54384 -13.38625 -13.29072 -12.98900 -12.91109 -12.40151 -12.38822 -12.30886 -11.94520 -11.75271 -11.38724 -11.04683 -10.84915 -10.71618 -10.46688 -10.13350 -10.08661 -9.87107 -9.72527 -9.50887 -9.03470 -8.77256 -8.40816 -6.84743 -5.74479 -3.06280 0.63435 1.82071 1.94548 2.92785 3.06800 3.31161 3.41493 3.46079 3.46909 3.59898 4.14732 4.25282 4.39606 4.47347 4.53513 4.94783 5.07758 5.14847 5.20094 5.30762 5.44721 5.52770 5.55013 5.56129 5.65375 5.77290 5.82400 5.86965 5.93784 6.12912 6.16281 6.22594 6.38287 6.44248 6.60281 6.70969 6.81130 7.26931 7.34858 7.46745 7.59309 8.00219 8.05647 9.07281 9.73795 10.64045 11.43224 Molecular weight = 328.14amu Principal moments of inertia in cm(-1) A = 0.022845 B = 0.002731 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.349630 B =10250.042115 C =10847.897255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.098 4.098 3 C -0.164 4.164 4 C -0.089 4.089 5 C 0.363 3.637 6 F -0.189 7.189 7 F -0.184 7.184 8 O -0.135 6.135 9 C -0.044 4.044 10 C 0.592 3.408 11 O -0.508 6.508 12 N -0.593 5.593 13 C 0.074 3.926 14 C 0.119 3.881 15 C 0.129 3.871 16 H 0.050 0.950 17 C -0.159 4.159 18 C 0.166 3.834 19 N -0.601 5.601 20 C -0.224 4.224 21 H 0.079 0.921 22 C -0.007 4.007 23 N -0.921 5.921 24 Si 0.910 3.090 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.285 1.285 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.163 0.837 32 H 0.141 0.859 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.067 0.933 41 H 0.027 0.973 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.870 24.898 -2.846 25.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.101 4.101 3 C -0.183 4.183 4 C -0.141 4.141 5 C 0.310 3.690 6 F -0.170 7.170 7 F -0.165 7.165 8 O -0.031 6.031 9 C -0.097 4.097 10 C 0.379 3.621 11 O -0.386 6.386 12 N -0.324 5.324 13 C -0.069 4.069 14 C -0.004 4.004 15 C 0.021 3.979 16 H 0.067 0.933 17 C -0.198 4.198 18 C 0.040 3.960 19 N -0.328 5.328 20 C -0.351 4.351 21 H 0.097 0.903 22 C -0.203 4.203 23 N -0.568 5.568 24 Si 0.740 3.260 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.212 1.212 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.180 0.820 32 H 0.158 0.842 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.045 0.955 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.462 24.162 -2.897 24.940 hybrid contribution -0.428 -0.604 -0.545 0.919 sum 5.034 23.557 -3.443 24.334 Atomic orbital electron populations 1.20415 0.87551 1.03658 1.03268 1.20632 0.98030 0.90390 1.01048 1.21474 0.90656 1.00712 1.05456 1.23079 0.96986 0.83275 1.10770 1.19565 0.79611 0.75948 0.93914 1.93068 1.59631 1.80603 1.83696 1.93063 1.94072 1.45439 1.83932 1.84315 1.28676 1.19558 1.70522 1.22337 0.80655 0.95410 1.11290 1.16611 0.85770 0.81456 0.78271 1.90892 1.15936 1.81644 1.50089 1.47767 1.06876 1.07268 1.70514 1.22072 0.80269 1.01969 1.02569 1.21936 1.01158 0.77717 0.99559 1.22522 0.95433 0.87018 0.92937 0.93299 1.23768 0.97465 0.99429 0.99087 1.22132 0.93143 0.91838 0.88844 1.46098 1.61986 0.98252 1.26462 1.18976 1.30707 0.85206 1.00251 0.90345 1.24791 1.01208 0.97032 0.97285 1.69822 1.47292 1.17353 1.22333 0.86242 0.78995 0.81335 0.79441 1.21096 1.21611 1.21166 0.90421 0.91387 0.89387 0.81971 0.84184 0.91995 0.90492 0.90108 0.90452 0.89335 0.90974 0.93411 0.91503 0.95499 0.93634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 9.75 36.01 0.35 -0.62 16 2 C -0.10 -1.14 6.20 -104.44 -0.65 -1.79 16 3 C -0.16 -1.51 10.38 -39.89 -0.41 -1.92 16 4 C -0.09 -0.82 6.93 -35.41 -0.25 -1.07 16 5 C 0.36 2.40 5.82 36.00 0.21 2.61 16 6 F -0.19 -1.65 17.31 2.25 0.04 -1.61 16 7 F -0.18 -1.37 17.02 2.25 0.04 -1.34 16 8 O -0.13 -1.54 7.25 4.98 0.04 -1.51 16 9 C -0.04 -0.59 6.77 -36.80 -0.25 -0.84 16 10 C 0.59 9.38 7.60 -12.86 -0.10 9.28 16 11 O -0.51 -9.42 14.54 5.19 0.08 -9.35 16 12 N -0.59 -8.98 2.76 -183.14 -0.50 -9.48 16 13 C 0.07 0.87 9.17 59.85 0.55 1.42 16 14 C 0.12 2.14 5.29 -4.04 -0.02 2.12 16 15 C 0.13 2.70 4.55 -66.86 -0.30 2.40 16 16 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 17 C -0.16 -3.02 7.32 -25.79 -0.19 -3.21 16 18 C 0.17 3.96 7.40 -2.85 -0.02 3.93 16 19 N -0.60 -15.45 3.58 -169.71 -0.61 -16.06 16 20 C -0.22 -6.27 10.51 -15.07 -0.16 -6.43 16 21 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 22 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 23 N -0.92 -27.54 11.54 55.49 0.64 -26.90 16 24 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.09 1.10 6.61 -51.93 -0.34 0.76 16 31 H 0.16 1.07 8.06 -52.48 -0.42 0.65 16 32 H 0.14 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.85 5.34 -51.93 -0.28 0.57 16 35 H 0.08 0.88 7.78 -51.93 -0.40 0.47 16 36 H 0.08 1.50 7.65 -51.93 -0.40 1.10 16 37 H 0.09 1.58 7.79 -51.93 -0.40 1.17 16 38 H 0.07 1.27 7.96 -51.93 -0.41 0.86 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 1.72 7.43 -51.93 -0.39 1.34 16 41 H 0.03 0.67 8.14 -51.92 -0.42 0.25 16 42 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 359.80 15.07 5.42 5.42 Total: -1.00 -33.18 359.80 -6.77 -39.95 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -5.55 Total: -2.03 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -1.33 Total: 5.61 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -0.47 Total: -52.43 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.11 Total: -10.85 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.08 Total: -2.95 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.18 -6.77 -39.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085648613.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.749 kcal (2) G-P(sol) polarization free energy of solvation -33.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds