Wall clock time and date at job start Tue Mar 31 2020 14:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40360 * 126.64653 * 2 1 4 4 C 1.35132 * 107.11785 * 180.02562 * 3 2 1 5 5 C 1.50697 * 125.61754 * 179.97438 * 4 3 2 6 6 F 1.39898 * 109.46863 * 209.99739 * 5 4 3 7 7 F 1.39901 * 109.47289 * 329.99561 * 5 4 3 8 8 O 1.33933 * 108.76246 * 359.75205 * 4 3 2 9 9 C 1.34919 * 109.38510 * 0.40678 * 8 4 3 10 10 C 1.46653 * 125.98393 * 179.85584 * 9 8 4 11 11 O 1.21697 * 119.99832 * 172.80684 * 10 9 8 12 12 N 1.34781 * 120.00469 * 352.82048 * 10 9 8 13 13 C 1.46498 * 119.99915 * 4.23525 * 12 10 9 14 14 C 1.46496 * 120.00056 * 184.24784 * 12 10 9 15 15 C 1.53001 * 109.46848 * 275.19853 * 14 12 10 16 16 H 1.08996 * 112.96800 * 67.99481 * 15 14 12 17 17 C 1.53944 * 113.76690 * 296.30971 * 15 14 12 18 18 C 1.53943 * 86.29125 * 222.09593 * 17 15 14 19 19 N 1.47588 * 113.76679 * 199.66976 * 15 14 12 20 20 C 1.36927 * 134.49445 * 318.93214 * 19 15 14 21 21 H 1.08007 * 120.00211 * 5.32417 * 20 19 15 22 22 C 1.38807 * 120.00110 * 185.33298 * 20 19 15 23 23 N 1.31622 * 120.00212 * 359.97438 * 22 20 19 24 24 Si 1.86810 * 120.00261 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47200 * 59.99545 * 24 22 20 26 26 H 1.48500 * 109.47397 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47058 * 299.99780 * 24 22 20 28 28 H 1.08998 * 109.47697 * 269.97855 * 1 2 3 29 29 H 1.09003 * 109.47281 * 29.97590 * 1 2 3 30 30 H 1.09006 * 109.47056 * 149.97549 * 1 2 3 31 31 H 1.08005 * 126.44547 * 0.02562 * 3 2 1 32 32 H 1.08995 * 109.47454 * 89.99906 * 5 4 3 33 33 H 1.09000 * 109.46709 * 84.22549 * 13 12 10 34 34 H 1.09000 * 109.47260 * 324.23264 * 13 12 10 35 35 H 1.08991 * 109.47266 * 204.22946 * 13 12 10 36 36 H 1.09001 * 109.47299 * 35.19268 * 14 12 10 37 37 H 1.08995 * 109.47423 * 155.19952 * 14 12 10 38 38 H 1.09002 * 113.74745 * 336.43966 * 17 15 14 39 39 H 1.09002 * 113.73953 * 107.63907 * 17 15 14 40 40 H 1.08998 * 113.77358 * 137.91343 * 18 17 15 41 41 H 1.09009 * 113.76599 * 269.19616 * 18 17 15 42 42 H 0.97003 * 120.00390 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6744 -0.0006 5 6 4.8550 1.5357 -0.0013 6 9 5.8901 0.8646 -0.6612 7 9 4.5846 2.7394 -0.6610 8 8 3.6005 -0.6648 0.0046 9 6 2.3219 -1.0955 -0.0005 10 6 1.8842 -2.4952 -0.0004 11 8 0.7041 -2.7637 0.1267 12 7 2.7890 -3.4843 -0.1407 13 6 4.2179 -3.1669 -0.2001 14 6 2.3434 -4.8768 -0.2340 15 6 2.1507 -5.4459 1.1731 16 1 1.3156 -4.9905 1.7054 17 6 3.4488 -5.5147 1.9977 18 6 2.9626 -6.8997 2.4617 19 7 2.1550 -6.9209 1.2239 20 6 1.6248 -7.9097 0.4390 21 1 1.1302 -7.6571 -0.4873 22 6 1.7228 -9.2368 0.8339 23 7 2.3258 -9.5448 1.9626 24 14 0.9987 -10.5858 -0.2365 25 1 1.6477 -10.5600 -1.5719 26 1 1.2348 -11.9052 0.4027 27 1 -0.4615 -10.3646 -0.3914 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 2.0307 2.1595 0.0004 32 1 5.1537 1.7435 1.0261 33 1 4.6121 -3.0754 0.8120 34 1 4.3593 -2.2258 -0.7315 35 1 4.7455 -3.9633 -0.7249 36 1 1.3988 -4.9205 -0.7761 37 1 3.0938 -5.4637 -0.7636 38 1 4.3534 -5.5479 1.3905 39 1 3.5006 -4.7754 2.7970 40 1 3.7481 -7.6549 2.4882 41 1 2.3671 -6.8732 3.3743 42 1 2.3946 -10.4723 2.2384 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085648613.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:08 Heat of formation + Delta-G solvation = -72.557821 kcal Electronic energy + Delta-G solvation = -28328.771043 eV Core-core repulsion = 23948.134877 eV Total energy + Delta-G solvation = -4380.636166 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.139 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.11677 -48.15237 -43.98084 -40.98394 -39.48053 -36.81985 -35.17277 -34.24221 -32.78186 -30.35494 -29.85945 -28.89875 -27.98218 -26.88934 -25.32577 -24.35216 -22.76219 -22.19734 -20.98102 -20.51773 -18.89303 -18.80903 -18.57127 -18.13818 -18.11983 -17.62914 -17.25712 -16.89475 -16.46825 -15.89686 -15.55917 -15.24422 -15.04286 -14.82602 -14.65830 -14.45415 -14.27687 -14.14440 -14.04285 -13.94387 -13.91497 -13.74286 -13.33943 -13.12643 -13.08247 -12.89701 -12.59285 -12.39980 -12.38450 -12.30780 -11.83288 -11.60033 -11.39711 -11.22492 -10.85445 -10.85299 -10.01699 -9.64518 -8.91442 -7.90983 -5.24058 -0.26922 1.02061 1.13713 1.44447 1.48085 1.53837 1.81680 1.94857 2.47999 2.65868 3.07109 3.28691 3.35261 3.45713 3.59795 3.75781 3.85497 3.87819 4.11547 4.18406 4.24272 4.25507 4.34736 4.47163 4.53238 4.61788 4.72142 4.74916 4.87900 4.90994 4.93202 4.96265 5.01404 5.06304 5.17801 5.30153 5.39814 5.54488 5.62819 5.66482 5.92932 6.20925 6.86090 6.92042 7.60718 8.57082 9.26600 Molecular weight = 328.14amu Principal moments of inertia in cm(-1) A = 0.022845 B = 0.002731 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.349630 B =10250.042115 C =10847.897255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.095 4.095 3 C -0.164 4.164 4 C -0.079 4.079 5 C 0.365 3.635 6 F -0.201 7.201 7 F -0.187 7.187 8 O -0.139 6.139 9 C -0.076 4.076 10 C 0.589 3.411 11 O -0.548 6.548 12 N -0.593 5.593 13 C 0.072 3.928 14 C 0.136 3.864 15 C 0.129 3.871 16 H 0.029 0.971 17 C -0.124 4.124 18 C 0.158 3.842 19 N -0.627 5.627 20 C -0.233 4.233 21 H 0.082 0.918 22 C -0.065 4.065 23 N -0.954 5.954 24 Si 0.976 3.024 25 H -0.272 1.272 26 H -0.294 1.294 27 H -0.282 1.282 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.192 0.808 32 H 0.190 0.810 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.043 0.957 41 H 0.010 0.990 42 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.180 27.590 -3.491 28.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.183 4.183 4 C -0.131 4.131 5 C 0.312 3.688 6 F -0.182 7.182 7 F -0.168 7.168 8 O -0.035 6.035 9 C -0.128 4.128 10 C 0.378 3.622 11 O -0.429 6.429 12 N -0.324 5.324 13 C -0.069 4.069 14 C 0.012 3.988 15 C 0.022 3.978 16 H 0.046 0.954 17 C -0.162 4.162 18 C 0.033 3.967 19 N -0.354 5.354 20 C -0.361 4.361 21 H 0.100 0.900 22 C -0.258 4.258 23 N -0.603 5.603 24 Si 0.804 3.196 25 H -0.198 1.198 26 H -0.220 1.220 27 H -0.208 1.208 28 H 0.099 0.901 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.209 0.791 32 H 0.207 0.793 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.061 0.939 41 H 0.028 0.972 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.800 26.903 -3.562 27.977 hybrid contribution -0.843 -1.280 -0.332 1.568 sum 5.957 25.623 -3.894 26.593 Atomic orbital electron populations 1.20428 0.87270 1.03724 1.03456 1.20951 0.98536 0.90910 0.99431 1.21765 0.90066 1.01342 1.05090 1.23785 0.98437 0.82562 1.08348 1.20110 0.77982 0.74914 0.95803 1.93047 1.60012 1.80971 1.84218 1.93061 1.94014 1.45453 1.84311 1.84267 1.27648 1.20772 1.70861 1.21800 0.81853 0.94290 1.14906 1.16941 0.85316 0.82630 0.77310 1.90863 1.17531 1.82626 1.51839 1.47759 1.08339 1.05827 1.70435 1.22264 0.78109 1.02922 1.03632 1.21489 1.00548 0.79579 0.97158 1.22575 0.95807 0.84423 0.94958 0.95375 1.23518 0.96950 0.96546 0.99151 1.22105 0.92403 0.94258 0.87982 1.46484 1.62066 1.00089 1.26759 1.19358 1.29922 0.86179 1.00689 0.90048 1.25619 1.02159 0.99280 0.98786 1.70005 1.48899 1.17262 1.24100 0.85195 0.78197 0.78078 0.78136 1.19783 1.21987 1.20823 0.90128 0.88630 0.91945 0.79070 0.79347 0.90870 0.89492 0.88935 0.92475 0.88793 0.88853 0.90610 0.93905 0.97231 0.94250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.86 9.75 71.24 0.69 -1.17 16 2 C -0.10 -2.06 6.20 -19.74 -0.12 -2.18 16 3 C -0.16 -2.50 10.38 22.07 0.23 -2.27 16 4 C -0.08 -1.21 6.93 24.97 0.17 -1.03 16 5 C 0.37 3.38 5.82 71.23 0.41 3.79 16 6 F -0.20 -2.89 17.31 44.97 0.78 -2.11 16 7 F -0.19 -2.11 17.02 44.97 0.77 -1.34 16 8 O -0.14 -2.87 7.25 -5.11 -0.04 -2.90 16 9 C -0.08 -1.94 6.77 24.07 0.16 -1.78 16 10 C 0.59 18.72 7.60 86.44 0.66 19.38 16 11 O -0.55 -21.09 14.54 -4.34 -0.06 -21.16 16 12 N -0.59 -17.57 2.76 -851.56 -2.35 -19.92 16 13 C 0.07 1.55 9.17 127.77 1.17 2.72 16 14 C 0.14 4.92 5.29 86.38 0.46 5.38 16 15 C 0.13 5.48 4.55 45.09 0.21 5.68 16 16 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 17 C -0.12 -4.55 7.32 31.25 0.23 -4.32 16 18 C 0.16 7.70 7.40 86.44 0.64 8.34 16 19 N -0.63 -32.88 3.58 -690.84 -2.47 -35.35 16 20 C -0.23 -13.31 10.51 84.03 0.88 -12.43 16 21 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 22 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 23 N -0.95 -58.58 11.54 21.65 0.25 -58.33 16 24 Si 0.98 46.57 29.55 68.60 2.03 48.60 16 25 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 26 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 27 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 28 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 1.60 6.61 -2.38 -0.02 1.59 16 31 H 0.19 1.70 8.06 -2.91 -0.02 1.68 16 32 H 0.19 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 34 H 0.09 1.73 5.34 -2.39 -0.01 1.72 16 35 H 0.09 1.77 7.78 -2.39 -0.02 1.75 16 36 H 0.06 2.28 7.65 -2.39 -0.02 2.27 16 37 H 0.09 3.29 7.79 -2.39 -0.02 3.27 16 38 H 0.09 3.07 7.96 -2.39 -0.02 3.05 16 39 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.04 2.27 7.43 -2.39 -0.02 2.26 16 41 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 42 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -74.84 359.80 6.21 -68.64 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 1.05 Total: 7.09 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 6.26 Total: 16.78 kcal Atomic # 7 Polarization: -109.03 SS G_CDS: -4.57 Total: -113.60 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.10 Total: -24.06 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 1.54 Total: -3.45 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -74.84 6.21 -68.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085648613.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.922 kcal (2) G-P(sol) polarization free energy of solvation -74.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds