Wall clock time and date at job start Tue Mar 31 2020 14:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.40360 * 126.64577 * 2 1 4 4 C 1.35131 * 107.11529 * 179.97438 * 3 2 1 5 5 C 1.50699 * 125.61606 * 180.02562 * 4 3 2 6 6 F 1.39897 * 109.47342 * 209.99950 * 5 4 3 7 7 F 1.39897 * 109.47553 * 330.00423 * 5 4 3 8 8 O 1.33932 * 108.76659 * 359.75974 * 4 3 2 9 9 C 1.34912 * 109.38367 * 0.39702 * 8 4 3 10 10 C 1.46660 * 125.99026 * 179.86429 * 9 8 4 11 11 O 1.21691 * 120.00521 * 173.61829 * 10 9 8 12 12 N 1.34785 * 119.99596 * 353.62194 * 10 9 8 13 13 C 1.46494 * 119.99627 * 174.84881 * 12 10 9 14 14 C 1.46496 * 120.00080 * 354.84855 * 12 10 9 15 15 C 1.53004 * 109.47343 * 85.32084 * 14 12 10 16 16 H 1.08998 * 113.03971 * 293.38634 * 15 14 12 17 17 C 1.53946 * 113.76613 * 65.14091 * 15 14 12 18 18 C 1.53943 * 86.28801 * 137.90661 * 17 15 14 19 19 N 1.47579 * 86.24399 * 336.33640 * 18 17 15 20 20 C 1.36930 * 134.49186 * 204.69604 * 19 18 17 21 21 H 1.08008 * 119.99942 * 183.38728 * 20 19 18 22 22 C 1.38816 * 120.00300 * 3.39195 * 20 19 18 23 23 N 1.31618 * 119.99782 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00202 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47090 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47419 * 119.99635 * 24 22 20 27 27 H 1.48500 * 109.47007 * 240.00243 * 24 22 20 28 28 H 1.09003 * 109.46797 * 270.02566 * 1 2 3 29 29 H 1.08994 * 109.47078 * 30.02586 * 1 2 3 30 30 H 1.09004 * 109.46829 * 150.02647 * 1 2 3 31 31 H 1.08003 * 126.44051 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.46776 * 90.00642 * 5 4 3 33 33 H 1.08998 * 109.47340 * 269.27190 * 13 12 10 34 34 H 1.08996 * 109.47858 * 29.27934 * 13 12 10 35 35 H 1.09004 * 109.46863 * 149.28041 * 13 12 10 36 36 H 1.09004 * 109.47010 * 325.32646 * 14 12 10 37 37 H 1.08994 * 109.47377 * 205.32758 * 14 12 10 38 38 H 1.09000 * 113.74347 * 23.55687 * 17 15 14 39 39 H 1.09003 * 113.83465 * 252.27014 * 17 15 14 40 40 H 1.09000 * 113.76600 * 90.69383 * 18 17 15 41 41 H 1.09001 * 113.76777 * 221.97312 * 18 17 15 42 42 H 0.96997 * 119.99812 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6744 0.0006 5 6 4.8551 1.5356 0.0013 6 9 5.8909 0.8649 -0.6577 7 9 4.5854 2.7397 -0.6580 8 8 3.6005 -0.6648 0.0062 9 6 2.3221 -1.0956 0.0006 10 6 1.8842 -2.4953 0.0012 11 8 0.7024 -2.7632 0.1129 12 7 2.7909 -3.4850 -0.1218 13 6 2.3688 -4.8832 -0.0081 14 6 4.1984 -3.1624 -0.3691 15 6 4.9014 -2.8924 0.9628 16 1 4.5402 -1.9929 1.4612 17 6 4.9794 -4.1234 1.8839 18 6 6.4233 -3.6822 2.1847 19 7 6.3761 -2.9807 0.8871 20 6 7.3188 -2.5768 -0.0202 21 1 7.0216 -2.0173 -0.8950 22 6 8.6565 -2.8862 0.1843 23 7 9.0188 -3.5675 1.2505 24 14 9.9425 -2.3345 -1.0530 25 1 9.2818 -1.5896 -2.1549 26 1 10.9298 -1.4522 -0.3809 27 1 10.6381 -3.5236 -1.6076 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8903 -0.5134 31 1 2.0306 2.1595 -0.0004 32 1 5.1527 1.7430 1.0292 33 1 2.4474 -5.2032 1.0309 34 1 1.3353 -4.9790 -0.3407 35 1 3.0100 -5.5079 -0.6300 36 1 4.2625 -2.2759 -1.0000 37 1 4.6806 -4.0012 -0.8710 38 1 4.9122 -5.0733 1.3536 39 1 4.3155 -4.0706 2.7468 40 1 6.5091 -3.0147 3.0421 41 1 7.1372 -4.5054 2.2135 42 1 9.9535 -3.7841 1.3932 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085648614.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:11 Heat of formation + Delta-G solvation = -51.854275 kcal Electronic energy + Delta-G solvation = -29757.542984 eV Core-core repulsion = 25377.804591 eV Total energy + Delta-G solvation = -4379.738393 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.139 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.08953 -47.07837 -42.89548 -39.62336 -37.97089 -35.42932 -34.07529 -32.11911 -31.73417 -28.80218 -28.05891 -27.84009 -27.23341 -25.40223 -23.33901 -22.71323 -21.71061 -21.17745 -19.51057 -18.99574 -17.81215 -17.65866 -17.13945 -17.05930 -16.79764 -16.25379 -15.95477 -15.26658 -14.80073 -14.50499 -14.17394 -13.93485 -13.68013 -13.66997 -13.46204 -13.30256 -13.18452 -13.01618 -12.81786 -12.71164 -12.48342 -12.24183 -12.14694 -11.92797 -11.44626 -11.39601 -11.06635 -10.91262 -10.72619 -10.45836 -10.16247 -9.89859 -9.78867 -9.72264 -9.59781 -8.82611 -8.77284 -8.39676 -6.86861 -5.74171 -3.07250 0.85633 2.03985 2.26343 3.01461 3.12378 3.39727 3.46611 3.48388 3.69221 3.98852 4.37444 4.52815 4.59046 4.68957 4.82903 5.13425 5.16142 5.27266 5.36108 5.41452 5.50114 5.55341 5.58135 5.62176 5.70225 5.80665 5.85348 5.87925 5.97558 6.07628 6.21518 6.26436 6.41436 6.44856 6.66450 6.68629 6.82172 7.23151 7.36798 7.42992 7.61597 8.00834 8.04654 9.07258 9.73300 10.61339 11.42038 Molecular weight = 328.14amu Principal moments of inertia in cm(-1) A = 0.010867 B = 0.005651 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.929751 B = 4953.551176 C = 6940.791751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.098 4.098 3 C -0.176 4.176 4 C -0.067 4.067 5 C 0.358 3.642 6 F -0.175 7.175 7 F -0.188 7.188 8 O -0.118 6.118 9 C -0.056 4.056 10 C 0.600 3.400 11 O -0.527 6.527 12 N -0.594 5.594 13 C 0.087 3.913 14 C 0.105 3.895 15 C 0.132 3.868 16 H 0.047 0.953 17 C -0.160 4.160 18 C 0.157 3.843 19 N -0.597 5.597 20 C -0.215 4.215 21 H 0.080 0.920 22 C -0.006 4.006 23 N -0.921 5.921 24 Si 0.906 3.094 25 H -0.278 1.278 26 H -0.291 1.291 27 H -0.291 1.291 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.161 0.839 32 H 0.139 0.861 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.047 0.953 40 H 0.022 0.978 41 H 0.077 0.923 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.457 6.170 -0.781 15.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 C -0.195 4.195 4 C -0.121 4.121 5 C 0.304 3.696 6 F -0.156 7.156 7 F -0.169 7.169 8 O -0.012 6.012 9 C -0.109 4.109 10 C 0.388 3.612 11 O -0.407 6.407 12 N -0.325 5.325 13 C -0.055 4.055 14 C -0.018 4.018 15 C 0.024 3.976 16 H 0.064 0.936 17 C -0.198 4.198 18 C 0.032 3.968 19 N -0.324 5.324 20 C -0.343 4.343 21 H 0.097 0.903 22 C -0.203 4.203 23 N -0.568 5.568 24 Si 0.736 3.264 25 H -0.203 1.203 26 H -0.218 1.218 27 H -0.218 1.218 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.179 0.821 32 H 0.156 0.844 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.065 0.935 40 H 0.040 0.960 41 H 0.095 0.905 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -14.430 5.824 -0.903 15.587 hybrid contribution 1.029 0.674 -0.646 1.390 sum -13.401 6.498 -1.549 14.973 Atomic orbital electron populations 1.20370 0.87830 1.03389 1.02933 1.20569 0.97725 0.90485 1.01319 1.21419 0.90616 1.00570 1.06944 1.23202 0.97025 0.83281 1.08601 1.19581 0.79921 0.75861 0.94226 1.93165 1.58910 1.80193 1.83306 1.93035 1.94157 1.45658 1.84061 1.84501 1.27895 1.19515 1.69303 1.22060 0.81258 0.95125 1.12437 1.16570 0.85324 0.81887 0.77445 1.90810 1.15788 1.82230 1.51849 1.47754 1.08962 1.06441 1.69342 1.21742 1.01376 0.80203 1.02209 1.22203 0.77943 1.02279 0.99390 1.22617 0.86722 0.95529 0.92705 0.93589 1.23783 0.99618 0.97963 0.98450 1.22242 0.91882 0.95231 0.87482 1.46060 0.98768 1.68032 1.19500 1.19042 0.86380 1.28692 1.00189 0.90267 1.24729 0.96798 1.00830 0.97909 1.69829 1.15801 1.43672 1.27543 0.86134 0.81883 0.77823 0.80539 1.20348 1.21809 1.21810 0.90700 0.91492 0.89677 0.82091 0.84365 0.92092 0.90517 0.90754 0.90333 0.89011 0.90832 0.93463 0.96005 0.90456 0.93823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.99 9.76 36.01 0.35 -0.63 16 2 C -0.10 -1.32 6.20 -104.43 -0.65 -1.97 16 3 C -0.18 -2.16 10.38 -39.89 -0.41 -2.58 16 4 C -0.07 -0.95 6.93 -35.41 -0.25 -1.20 16 5 C 0.36 4.61 5.82 36.01 0.21 4.82 16 6 F -0.17 -3.00 17.31 2.25 0.04 -2.96 16 7 F -0.19 -2.31 17.02 2.25 0.04 -2.27 16 8 O -0.12 -1.94 5.55 5.00 0.03 -1.91 16 9 C -0.06 -0.88 6.62 -36.80 -0.24 -1.12 16 10 C 0.60 9.67 7.60 -12.86 -0.10 9.57 16 11 O -0.53 -8.93 14.36 5.20 0.07 -8.86 16 12 N -0.59 -9.11 2.78 -183.14 -0.51 -9.62 16 13 C 0.09 1.09 10.10 59.84 0.60 1.69 16 14 C 0.11 1.83 4.93 -4.04 -0.02 1.81 16 15 C 0.13 2.60 3.94 -66.67 -0.26 2.34 16 16 H 0.05 0.95 6.50 -51.93 -0.34 0.61 16 17 C -0.16 -2.97 7.28 -25.79 -0.19 -3.16 16 18 C 0.16 3.62 7.59 -2.98 -0.02 3.60 16 19 N -0.60 -14.59 3.59 -169.63 -0.61 -15.20 16 20 C -0.22 -5.81 10.53 -15.06 -0.16 -5.97 16 21 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 22 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 23 N -0.92 -26.80 11.32 55.49 0.63 -26.18 16 24 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.05 6.59 -51.93 -0.34 0.71 16 31 H 0.16 1.51 8.06 -52.48 -0.42 1.09 16 32 H 0.14 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.06 0.73 8.06 -51.93 -0.42 0.31 16 34 H 0.08 0.92 7.33 -51.93 -0.38 0.54 16 35 H 0.07 0.82 7.87 -51.93 -0.41 0.42 16 36 H 0.08 1.44 5.91 -51.93 -0.31 1.14 16 37 H 0.09 1.63 7.85 -51.93 -0.41 1.22 16 38 H 0.07 1.30 8.06 -51.93 -0.42 0.88 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 1.97 7.00 -51.93 -0.36 1.61 16 42 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 356.05 15.07 5.37 5.37 Total: -1.00 -31.77 356.05 -6.66 -38.43 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -5.47 Total: -0.75 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -1.23 Total: 6.94 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.49 Total: -51.00 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.10 Total: -10.77 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.08 Total: -5.23 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.77 -6.66 -38.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085648614.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.424 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds