Wall clock time and date at job start Tue Mar 31 2020 14:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.40360 * 126.64577 * 2 1 4 4 C 1.35131 * 107.11529 * 179.97438 * 3 2 1 5 5 C 1.50699 * 125.61606 * 180.02562 * 4 3 2 6 6 F 1.39897 * 109.47342 * 209.99950 * 5 4 3 7 7 F 1.39897 * 109.47553 * 330.00423 * 5 4 3 8 8 O 1.33932 * 108.76659 * 359.75974 * 4 3 2 9 9 C 1.34912 * 109.38367 * 0.39702 * 8 4 3 10 10 C 1.46660 * 125.99026 * 179.86429 * 9 8 4 11 11 O 1.21691 * 120.00521 * 173.61829 * 10 9 8 12 12 N 1.34785 * 119.99596 * 353.62194 * 10 9 8 13 13 C 1.46494 * 119.99627 * 174.84881 * 12 10 9 14 14 C 1.46496 * 120.00080 * 354.84855 * 12 10 9 15 15 C 1.53004 * 109.47343 * 85.32084 * 14 12 10 16 16 H 1.08998 * 113.03971 * 293.38634 * 15 14 12 17 17 C 1.53946 * 113.76613 * 65.14091 * 15 14 12 18 18 C 1.53943 * 86.28801 * 137.90661 * 17 15 14 19 19 N 1.47579 * 86.24399 * 336.33640 * 18 17 15 20 20 C 1.36930 * 134.49186 * 204.69604 * 19 18 17 21 21 H 1.08008 * 119.99942 * 183.38728 * 20 19 18 22 22 C 1.38816 * 120.00300 * 3.39195 * 20 19 18 23 23 N 1.31618 * 119.99782 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00202 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47090 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47419 * 119.99635 * 24 22 20 27 27 H 1.48500 * 109.47007 * 240.00243 * 24 22 20 28 28 H 1.09003 * 109.46797 * 270.02566 * 1 2 3 29 29 H 1.08994 * 109.47078 * 30.02586 * 1 2 3 30 30 H 1.09004 * 109.46829 * 150.02647 * 1 2 3 31 31 H 1.08003 * 126.44051 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.46776 * 90.00642 * 5 4 3 33 33 H 1.08998 * 109.47340 * 269.27190 * 13 12 10 34 34 H 1.08996 * 109.47858 * 29.27934 * 13 12 10 35 35 H 1.09004 * 109.46863 * 149.28041 * 13 12 10 36 36 H 1.09004 * 109.47010 * 325.32646 * 14 12 10 37 37 H 1.08994 * 109.47377 * 205.32758 * 14 12 10 38 38 H 1.09000 * 113.74347 * 23.55687 * 17 15 14 39 39 H 1.09003 * 113.83465 * 252.27014 * 17 15 14 40 40 H 1.09000 * 113.76600 * 90.69383 * 18 17 15 41 41 H 1.09001 * 113.76777 * 221.97312 * 18 17 15 42 42 H 0.96997 * 119.99812 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6744 0.0006 5 6 4.8551 1.5356 0.0013 6 9 5.8909 0.8649 -0.6577 7 9 4.5854 2.7397 -0.6580 8 8 3.6005 -0.6648 0.0062 9 6 2.3221 -1.0956 0.0006 10 6 1.8842 -2.4953 0.0012 11 8 0.7024 -2.7632 0.1129 12 7 2.7909 -3.4850 -0.1218 13 6 2.3688 -4.8832 -0.0081 14 6 4.1984 -3.1624 -0.3691 15 6 4.9014 -2.8924 0.9628 16 1 4.5402 -1.9929 1.4612 17 6 4.9794 -4.1234 1.8839 18 6 6.4233 -3.6822 2.1847 19 7 6.3761 -2.9807 0.8871 20 6 7.3188 -2.5768 -0.0202 21 1 7.0216 -2.0173 -0.8950 22 6 8.6565 -2.8862 0.1843 23 7 9.0188 -3.5675 1.2505 24 14 9.9425 -2.3345 -1.0530 25 1 9.2818 -1.5896 -2.1549 26 1 10.9298 -1.4522 -0.3809 27 1 10.6381 -3.5236 -1.6076 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8903 -0.5134 31 1 2.0306 2.1595 -0.0004 32 1 5.1527 1.7430 1.0292 33 1 2.4474 -5.2032 1.0309 34 1 1.3353 -4.9790 -0.3407 35 1 3.0100 -5.5079 -0.6300 36 1 4.2625 -2.2759 -1.0000 37 1 4.6806 -4.0012 -0.8710 38 1 4.9122 -5.0733 1.3536 39 1 4.3155 -4.0706 2.7468 40 1 6.5091 -3.0147 3.0421 41 1 7.1372 -4.5054 2.2135 42 1 9.9535 -3.7841 1.3932 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085648614.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:11 Heat of formation + Delta-G solvation = -69.881337 kcal Electronic energy + Delta-G solvation = -29758.324696 eV Core-core repulsion = 25377.804591 eV Total energy + Delta-G solvation = -4380.520105 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.139 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.16289 -48.19114 -43.98572 -40.89704 -39.59318 -36.73449 -35.15136 -34.14681 -32.77739 -30.06102 -29.80314 -29.16604 -28.31808 -26.49780 -25.26803 -24.26254 -22.78389 -22.29614 -20.99645 -20.41461 -18.88358 -18.78579 -18.70481 -18.16768 -18.14076 -17.48209 -17.29674 -16.80119 -16.41337 -15.86434 -15.67443 -15.31349 -15.07864 -14.85302 -14.60163 -14.42086 -14.22173 -14.13223 -14.08212 -13.88290 -13.80255 -13.48680 -13.32794 -13.18230 -13.11423 -12.92719 -12.55258 -12.42758 -12.40586 -12.24419 -11.74505 -11.53679 -11.49383 -11.21076 -10.86794 -10.75793 -10.00123 -9.63415 -8.85294 -7.84155 -5.16872 -0.26573 1.02066 1.21265 1.45739 1.47131 1.56501 1.82903 1.93994 2.49231 2.64498 3.00682 3.24674 3.36908 3.54446 3.62100 3.73025 3.79165 3.86058 4.09467 4.18133 4.24693 4.34597 4.40609 4.48802 4.55380 4.63411 4.75937 4.79517 4.88152 4.91706 4.93970 4.98842 5.04906 5.09329 5.23243 5.33194 5.40934 5.61921 5.66069 5.73863 5.98827 6.12795 6.83768 6.98846 7.67327 8.61929 9.32019 Molecular weight = 328.14amu Principal moments of inertia in cm(-1) A = 0.010867 B = 0.005651 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.929751 B = 4953.551176 C = 6940.791751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.092 4.092 3 C -0.161 4.161 4 C -0.083 4.083 5 C 0.356 3.644 6 F -0.204 7.204 7 F -0.183 7.183 8 O -0.143 6.143 9 C -0.088 4.088 10 C 0.598 3.402 11 O -0.539 6.539 12 N -0.593 5.593 13 C 0.082 3.918 14 C 0.124 3.876 15 C 0.139 3.861 16 H 0.044 0.956 17 C -0.133 4.133 18 C 0.150 3.850 19 N -0.621 5.621 20 C -0.211 4.211 21 H 0.077 0.923 22 C -0.062 4.062 23 N -0.952 5.952 24 Si 0.963 3.037 25 H -0.270 1.270 26 H -0.295 1.295 27 H -0.292 1.292 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.194 0.806 32 H 0.173 0.827 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.012 0.988 41 H 0.048 0.952 42 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.278 7.137 -1.071 17.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 C -0.180 4.180 4 C -0.136 4.136 5 C 0.303 3.697 6 F -0.185 7.185 7 F -0.164 7.164 8 O -0.039 6.039 9 C -0.140 4.140 10 C 0.387 3.613 11 O -0.420 6.420 12 N -0.324 5.324 13 C -0.059 4.059 14 C -0.001 4.001 15 C 0.032 3.968 16 H 0.061 0.939 17 C -0.171 4.171 18 C 0.024 3.976 19 N -0.347 5.347 20 C -0.339 4.339 21 H 0.095 0.905 22 C -0.255 4.255 23 N -0.602 5.602 24 Si 0.793 3.207 25 H -0.194 1.194 26 H -0.222 1.222 27 H -0.219 1.219 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.089 0.911 31 H 0.211 0.789 32 H 0.190 0.810 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.030 0.970 41 H 0.067 0.933 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -16.300 6.791 -1.203 17.699 hybrid contribution 1.484 0.457 -0.538 1.643 sum -14.816 7.248 -1.741 16.586 Atomic orbital electron populations 1.20436 0.86128 1.04018 1.03699 1.20991 0.98890 0.90187 0.99418 1.21767 0.89452 1.01707 1.05068 1.23583 0.98219 0.82765 1.09045 1.19993 0.78862 0.75518 0.95324 1.93100 1.60339 1.81003 1.84061 1.93038 1.94038 1.45153 1.84202 1.84439 1.28451 1.20741 1.70227 1.22179 0.81581 0.95544 1.14742 1.16687 0.85236 0.82286 0.77121 1.90796 1.16050 1.82572 1.52555 1.47740 1.07804 1.07554 1.69289 1.21938 1.02011 0.78806 1.03147 1.21794 0.78977 1.01667 0.97622 1.22664 0.84155 0.95851 0.94117 0.93888 1.23577 0.96603 0.97892 0.98997 1.22197 0.94204 0.94263 0.86892 1.46370 1.00742 1.68005 1.19582 1.19262 0.87071 1.27249 1.00326 0.90490 1.25412 0.98610 1.01827 0.99662 1.69995 1.15538 1.45422 1.29251 0.85225 0.79528 0.77177 0.78808 1.19421 1.22234 1.21939 0.89719 0.88766 0.91116 0.78889 0.81044 0.91238 0.89968 0.89312 0.91449 0.89314 0.89548 0.90804 0.96981 0.93337 0.94509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.70 9.76 71.24 0.70 -1.00 16 2 C -0.09 -2.29 6.20 -19.74 -0.12 -2.41 16 3 C -0.16 -3.53 10.38 22.07 0.23 -3.30 16 4 C -0.08 -2.22 6.93 24.97 0.17 -2.05 16 5 C 0.36 8.69 5.82 71.24 0.41 9.11 16 6 F -0.20 -6.97 17.31 44.97 0.78 -6.19 16 7 F -0.18 -4.15 17.02 44.97 0.77 -3.39 16 8 O -0.14 -4.61 5.55 -5.03 -0.03 -4.64 16 9 C -0.09 -2.67 6.62 24.07 0.16 -2.51 16 10 C 0.60 18.60 7.60 86.44 0.66 19.26 16 11 O -0.54 -17.56 14.36 -4.32 -0.06 -17.62 16 12 N -0.59 -17.39 2.78 -851.54 -2.36 -19.76 16 13 C 0.08 1.88 10.10 127.77 1.29 3.17 16 14 C 0.12 4.21 4.93 86.38 0.43 4.63 16 15 C 0.14 5.38 3.94 45.03 0.18 5.56 16 16 H 0.04 1.74 6.50 -2.39 -0.02 1.73 16 17 C -0.13 -4.74 7.28 31.25 0.23 -4.51 16 18 C 0.15 6.99 7.59 86.48 0.66 7.65 16 19 N -0.62 -30.50 3.59 -690.59 -2.48 -32.97 16 20 C -0.21 -11.46 10.53 84.04 0.88 -10.57 16 21 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 22 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 23 N -0.95 -56.71 11.32 21.65 0.25 -56.47 16 24 Si 0.96 45.92 29.55 68.60 2.03 47.95 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 27 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 28 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.63 6.59 -2.39 -0.02 1.61 16 31 H 0.19 2.85 8.06 -2.91 -0.02 2.82 16 32 H 0.17 2.98 8.14 -2.39 -0.02 2.96 16 33 H 0.07 1.49 8.06 -2.39 -0.02 1.47 16 34 H 0.08 1.82 7.33 -2.39 -0.02 1.80 16 35 H 0.09 1.77 7.87 -2.39 -0.02 1.75 16 36 H 0.07 2.48 5.91 -2.39 -0.01 2.47 16 37 H 0.09 3.08 7.85 -2.39 -0.02 3.06 16 38 H 0.09 2.88 8.06 -2.39 -0.02 2.86 16 39 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.05 2.54 7.00 -2.39 -0.02 2.52 16 42 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -69.23 356.05 6.27 -62.96 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 1.05 Total: 10.16 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: 6.34 Total: 19.98 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -4.60 Total: -109.20 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.09 Total: -22.26 kcal Atomic # 9 Polarization: -11.12 SS G_CDS: 1.54 Total: -9.58 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -69.23 6.27 -62.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085648614.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.926 kcal (2) G-P(sol) polarization free energy of solvation -69.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds