Wall clock time and date at job start Tue Mar 31 2020 14:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36442 * 124.81585 * 2 1 4 4 C 1.34438 * 109.13980 * 179.70587 * 3 2 1 5 5 C 1.46791 * 106.41154 * 0.44013 * 4 3 2 6 6 C 1.46773 * 127.02617 * 179.82482 * 5 4 3 7 7 C 1.35204 * 120.00351 * 359.68807 * 6 5 4 8 8 C 1.41675 * 119.99800 * 180.02562 * 7 6 5 9 9 O 1.21768 * 120.00026 * 359.97438 * 8 7 6 10 10 N 1.34782 * 119.99419 * 180.27558 * 8 7 6 11 11 C 1.46498 * 120.00323 * 354.15131 * 10 8 7 12 12 C 1.50699 * 109.47208 * 89.99663 * 11 10 8 13 13 H 1.07997 * 120.00398 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99787 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99950 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99910 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47177 * 0.02562 * 16 14 12 18 18 H 1.48509 * 109.47062 * 120.00429 * 16 14 12 19 19 H 1.48495 * 109.47346 * 239.99963 * 16 14 12 20 20 C 1.39936 * 119.99551 * 174.14878 * 10 8 7 21 21 C 1.38878 * 120.04845 * 303.76208 * 20 10 8 22 22 C 1.38102 * 119.95108 * 179.79479 * 21 20 10 23 23 C 1.38476 * 120.05097 * 0.48082 * 22 21 20 24 24 F 1.35095 * 119.95508 * 179.72964 * 23 22 21 25 25 C 1.38477 * 120.09186 * 359.74856 * 23 22 21 26 26 C 1.38111 * 120.04989 * 0.02562 * 25 23 22 27 27 C 1.34830 * 124.81991 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47555 * 269.99853 * 1 2 3 29 29 H 1.08999 * 109.47068 * 30.00102 * 1 2 3 30 30 H 1.09003 * 109.47225 * 149.99869 * 1 2 3 31 31 H 1.07995 * 125.42701 * 359.97438 * 3 2 1 32 32 H 1.08001 * 126.79083 * 180.30326 * 4 3 2 33 33 H 1.08005 * 119.99500 * 179.68556 * 6 5 4 34 34 H 1.07995 * 120.00156 * 359.97438 * 7 6 5 35 35 H 1.08997 * 109.47117 * 210.00154 * 11 10 8 36 36 H 1.09002 * 109.47040 * 329.99523 * 11 10 8 37 37 H 0.97005 * 119.99790 * 179.97438 * 15 14 12 38 38 H 1.08003 * 120.02301 * 0.02562 * 21 20 10 39 39 H 1.08002 * 119.97582 * 180.23002 * 22 21 20 40 40 H 1.08003 * 119.97742 * 180.02562 * 25 23 22 41 41 H 1.08002 * 120.02672 * 179.97438 * 26 25 23 42 42 H 1.08001 * 125.92890 * 0.03804 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2440 1.1202 0.0000 4 6 3.5384 0.7569 0.0065 5 6 3.5572 -0.7108 0.0001 6 6 4.7403 -1.5795 0.0001 7 6 5.9782 -1.0359 0.0001 8 6 7.1201 -1.8746 -0.0005 9 8 6.9866 -3.0849 -0.0005 10 7 8.3542 -1.3326 0.0052 11 6 8.5177 0.1181 -0.1174 12 6 8.5117 0.7420 1.2544 13 1 8.3979 0.1201 2.1300 14 6 8.6526 2.1066 1.3916 15 7 8.7917 2.8639 0.3254 16 14 8.6458 2.8799 3.0920 17 1 8.4766 1.8193 4.1174 18 1 9.9319 3.5870 3.3193 19 1 7.5244 3.8483 3.1910 20 6 9.4792 -2.1556 0.1282 21 6 9.5984 -3.0127 1.2144 22 6 10.7075 -3.8272 1.3316 23 6 11.7050 -3.7826 0.3723 24 9 12.7918 -4.5762 0.4917 25 6 11.5905 -2.9253 -0.7092 26 6 10.4808 -2.1124 -0.8328 27 6 2.2349 -1.1069 0.0005 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 1.8789 2.1366 -0.0004 32 1 4.3948 1.4149 0.0128 33 1 4.6219 -2.6531 0.0001 34 1 6.0966 0.0375 -0.0003 35 1 9.4642 0.3365 -0.6118 36 1 7.6972 0.5277 -0.7065 37 1 8.8904 3.8240 0.4219 38 1 8.8225 -3.0449 1.9651 39 1 10.7988 -4.4965 2.1743 40 1 12.3694 -2.8923 -1.4566 41 1 10.3920 -1.4436 -1.6762 42 1 1.8788 -2.1265 0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493812708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:27 Heat of formation + Delta-G solvation = 21.392264 kcal Electronic energy + Delta-G solvation = -26560.266836 eV Core-core repulsion = 22614.473876 eV Total energy + Delta-G solvation = -3945.792960 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.133 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.53345 -40.84984 -39.92676 -37.89116 -34.97148 -33.98895 -32.60045 -31.48487 -30.76719 -29.40842 -28.59311 -27.10391 -26.22920 -23.74247 -23.25563 -22.33606 -21.49854 -20.16082 -19.39961 -17.95102 -17.35607 -17.15654 -16.72065 -16.36380 -15.95138 -15.68792 -15.32762 -15.21152 -14.50446 -14.24585 -14.10915 -13.92681 -13.57854 -13.16998 -13.08424 -12.91454 -12.77643 -12.50400 -12.44204 -12.27739 -12.25418 -11.91294 -11.82284 -11.51244 -11.09371 -10.95056 -10.72598 -10.66837 -10.17658 -9.88974 -9.81648 -9.24241 -8.70892 -8.67548 -8.56019 -8.31571 -7.59279 -7.31115 -6.18295 -4.25055 1.30960 1.63045 1.65648 2.49374 2.92710 3.23094 3.30808 3.32129 3.37216 3.85513 3.98112 4.27046 4.37605 4.56866 4.64561 4.90992 4.94697 5.07852 5.13848 5.14432 5.16071 5.19327 5.41967 5.59181 5.66063 5.76772 5.88026 5.95438 6.03681 6.23083 6.26706 6.40232 6.49003 6.56430 6.74469 6.76028 6.88079 6.94952 7.12370 7.17237 7.23563 7.26056 7.38876 7.66735 7.77382 8.02331 8.20309 8.78619 8.98031 9.42176 10.88307 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.009969 B = 0.003678 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.937101 B = 7611.874821 C = 9757.223763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.451 5.451 3 C -0.028 4.028 4 C -0.163 4.163 5 C -0.161 4.161 6 C 0.007 3.993 7 C -0.208 4.208 8 C 0.557 3.443 9 O -0.569 6.569 10 N -0.556 5.556 11 C 0.237 3.763 12 C -0.533 4.533 13 H 0.063 0.937 14 C 0.067 3.933 15 N -0.891 5.891 16 Si 0.895 3.105 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.282 1.282 20 C 0.176 3.824 21 C -0.085 4.085 22 C -0.141 4.141 23 C 0.070 3.930 24 F -0.149 7.149 25 C -0.140 4.140 26 C -0.104 4.104 27 C 0.015 3.985 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.161 0.839 32 H 0.150 0.850 33 H 0.124 0.876 34 H 0.143 0.857 35 H 0.040 0.960 36 H 0.047 0.953 37 H 0.265 0.735 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.863 -5.567 -2.019 12.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.127 5.127 3 C -0.154 4.154 4 C -0.187 4.187 5 C -0.168 4.168 6 C -0.014 4.014 7 C -0.229 4.229 8 C 0.352 3.648 9 O -0.452 6.452 10 N -0.281 5.281 11 C 0.118 3.882 12 C -0.572 4.572 13 H 0.081 0.919 14 C -0.136 4.136 15 N -0.529 5.529 16 Si 0.723 3.277 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.208 1.208 20 C 0.083 3.917 21 C -0.105 4.105 22 C -0.160 4.160 23 C 0.051 3.949 24 F -0.128 7.128 25 C -0.159 4.159 26 C -0.124 4.124 27 C -0.117 4.117 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.179 0.821 32 H 0.168 0.832 33 H 0.142 0.858 34 H 0.161 0.839 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -11.281 -5.921 -2.086 12.910 hybrid contribution 0.240 0.715 1.033 1.279 sum -11.041 -5.206 -1.053 12.252 Atomic orbital electron populations 1.22022 0.77676 1.04191 1.03097 1.43486 1.06229 1.06071 1.56939 1.21672 0.90783 0.90912 1.12010 1.22289 0.96030 0.94030 1.06302 1.19838 0.91415 0.93012 1.12549 1.21558 0.90259 0.97990 0.91573 1.22042 0.91785 1.01978 1.07118 1.17191 0.83796 0.87721 0.76080 1.90744 1.87097 1.15290 1.52031 1.45957 1.03071 1.09550 1.69533 1.19644 0.98838 0.71559 0.98115 1.21474 1.50970 0.92233 0.92507 0.91917 1.24890 0.94679 0.96946 0.97065 1.69930 1.49090 1.05514 1.28409 0.86468 0.77719 0.79314 0.84198 1.19623 1.20882 1.20776 1.17672 0.88621 0.92424 0.93033 1.20999 0.97061 0.95789 0.96677 1.20886 0.93998 1.01641 0.99489 1.17587 0.85321 0.94272 0.97767 1.91439 1.52762 1.72428 1.96132 1.20857 0.99491 0.97479 0.98121 1.20999 0.93656 0.99282 0.98500 1.22148 0.90222 0.91268 1.08111 0.91085 0.89950 0.90016 0.82142 0.83235 0.85808 0.83933 0.94185 0.93532 0.92555 0.85251 0.85081 0.84955 0.84820 0.81639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.44 11.03 59.85 0.66 1.10 16 2 N -0.45 -4.91 3.09 -124.11 -0.38 -5.30 16 3 C -0.03 -0.34 11.31 -16.84 -0.19 -0.53 16 4 C -0.16 -2.50 10.45 -37.47 -0.39 -2.89 16 5 C -0.16 -2.49 6.26 -103.06 -0.65 -3.13 16 6 C 0.01 0.12 9.65 -37.21 -0.36 -0.24 16 7 C -0.21 -4.11 8.55 -39.35 -0.34 -4.44 16 8 C 0.56 12.04 7.22 -14.95 -0.11 11.94 16 9 O -0.57 -12.99 15.45 5.13 0.08 -12.91 16 10 N -0.56 -12.14 2.57 -117.91 -0.30 -12.44 16 11 C 0.24 5.61 4.67 -5.19 -0.02 5.59 16 12 C -0.53 -13.81 9.24 -34.44 -0.32 -14.13 16 13 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 14 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -24.11 13.29 55.43 0.74 -23.38 16 16 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 C 0.18 3.59 5.18 -83.69 -0.43 3.16 16 21 C -0.09 -1.63 8.92 -39.39 -0.35 -1.98 16 22 C -0.14 -2.35 10.02 -39.54 -0.40 -2.75 16 23 C 0.07 1.16 7.30 -39.41 -0.29 0.87 16 24 F -0.15 -2.37 17.26 2.25 0.04 -2.33 16 25 C -0.14 -2.26 10.02 -39.54 -0.40 -2.65 16 26 C -0.10 -1.89 9.30 -39.39 -0.37 -2.25 16 27 C 0.01 0.18 11.39 -16.31 -0.19 0.00 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.39 8.13 -51.93 -0.42 -0.04 16 30 H 0.08 0.37 8.13 -51.93 -0.42 -0.05 16 31 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.15 2.43 7.52 -52.49 -0.39 2.04 16 33 H 0.12 2.03 7.45 -52.48 -0.39 1.64 16 34 H 0.14 2.97 5.18 -52.49 -0.27 2.69 16 35 H 0.04 0.99 7.29 -51.93 -0.38 0.61 16 36 H 0.05 1.12 6.35 -51.93 -0.33 0.79 16 37 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 38 H 0.13 2.49 8.04 -52.48 -0.42 2.07 16 39 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 40 H 0.13 1.76 8.06 -52.48 -0.42 1.33 16 41 H 0.13 2.26 7.78 -52.49 -0.41 1.85 16 42 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 370.87 15.07 5.59 5.59 Total: -1.00 -30.97 370.87 -8.59 -39.56 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -5.10 Total: 6.33 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -4.23 Total: -10.69 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.05 Total: -41.11 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.08 Total: -12.91 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.04 Total: -2.33 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.97 -8.59 -39.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493812708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.954 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds